| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is nikE [H]
Identifier: 38234674
GI number: 38234674
Start: 2177232
End: 2177873
Strand: Reverse
Name: nikE [H]
Synonym: DIP2125
Alternate gene names: 38234674
Gene position: 2177873-2177232 (Counterclockwise)
Preceding gene: 38234675
Following gene: 38234673
Centisome position: 87.51
GC content: 57.94
Gene sequence:
>642_bases ATGCTACGCGCTGACAACGTGACCATGCGATTTGGCACCACGACAGTGCTCGACAACATCACGCTAGAACTACCGCGACG CCACCTCCTCGGGCTCATCGGACCCTCGGGATCCGGAAAAACCACCCTCGCAGGGCTTCTCAGCGGACGACTCGCACCCA CATCAGGCACCGTGACTATTGATAATGAGCCAGTCCCACACAACCGCACACACCGACGCACCGATATTGTCAGTATCAGC CAACAACCACGCGACGCCTGCAATCCCAACTGGACGCTACGCACCATCATCGGTGAACCCCTCGCCATCGCCGGCGAACT TTCAACAGAACAGATCGCGCGCCGGGTAGAAGAGTGCGCCGCACGCGCCCTGTTAAGCCCCAGCCTGTTGGATCGCTTGC CTAGTCATGTCAGTGATGGCCAGCTGCAGCGCGCCTGCATTGCACGCGCACTCGTTATCGACCCAGCATTTCTCATTTGC GACGAGCCCACATCAATGCTGGATCCGCTAGCTACCGCGGCTGTTGTGGATTTGTTGCGCAGAATTGCCCACGAAGGTGC CGGAGTACTGTTTATTTCCCACGACCACCGACTGCTGCGAGCGTGCACTGATGAAGTGGTGCAAATAGGGGGAGAAAAAT AA
Upstream 100 bases:
>100_bases AACCACGACGATGTCCTCATCCACCCACAGCACCCCTTCTGCATCGCACTACTCGCAGCCCTACCCAGCGGCGGACTGCA CCTAGAAAAGGAGGCAGAAA
Downstream 100 bases:
>100_bases AAATCCACACCAACCCTGAACTGCTCCCCATAATCCGGACTGAGAAATCAGAAACCAGATTGTGGGGAGTTTCTCTATGC ATCCACGCAGTAAACTCAGT
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MLRADNVTMRFGTTTVLDNITLELPRRHLLGLIGPSGSGKTTLAGLLSGRLAPTSGTVTIDNEPVPHNRTHRRTDIVSIS QQPRDACNPNWTLRTIIGEPLAIAGELSTEQIARRVEECAARALLSPSLLDRLPSHVSDGQLQRACIARALVIDPAFLIC DEPTSMLDPLATAAVVDLLRRIAHEGAGVLFISHDHRLLRACTDEVVQIGGEK
Sequences:
>Translated_213_residues MLRADNVTMRFGTTTVLDNITLELPRRHLLGLIGPSGSGKTTLAGLLSGRLAPTSGTVTIDNEPVPHNRTHRRTDIVSIS QQPRDACNPNWTLRTIIGEPLAIAGELSTEQIARRVEECAARALLSPSLLDRLPSHVSDGQLQRACIARALVIDPAFLIC DEPTSMLDPLATAAVVDLLRRIAHEGAGVLFISHDHRLLRACTDEVVQIGGEK >Mature_213_residues MLRADNVTMRFGTTTVLDNITLELPRRHLLGLIGPSGSGKTTLAGLLSGRLAPTSGTVTIDNEPVPHNRTHRRTDIVSIS QQPRDACNPNWTLRTIIGEPLAIAGELSTEQIARRVEECAARALLSPSLLDRLPSHVSDGQLQRACIARALVIDPAFLIC DEPTSMLDPLATAAVVDLLRRIAHEGAGVLFISHDHRLLRACTDEVVQIGGEK
Specific function: Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=187, Percent_Identity=31.5508021390374, Blast_Score=75, Evalue=3e-14, Organism=Homo sapiens, GI4505771, Length=187, Percent_Identity=31.5508021390374, Blast_Score=75, Evalue=3e-14, Organism=Homo sapiens, GI9961252, Length=187, Percent_Identity=31.5508021390374, Blast_Score=75, Evalue=3e-14, Organism=Homo sapiens, GI42741659, Length=190, Percent_Identity=32.1052631578947, Blast_Score=73, Evalue=1e-13, Organism=Homo sapiens, GI171184400, Length=191, Percent_Identity=31.9371727748691, Blast_Score=73, Evalue=1e-13, Organism=Homo sapiens, GI62526033, Length=176, Percent_Identity=28.4090909090909, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI9665248, Length=179, Percent_Identity=29.608938547486, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI255708477, Length=194, Percent_Identity=28.8659793814433, Blast_Score=68, Evalue=5e-12, Organism=Homo sapiens, GI27881501, Length=197, Percent_Identity=26.3959390862944, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI30795238, Length=197, Percent_Identity=26.3959390862944, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI73747915, Length=181, Percent_Identity=29.2817679558011, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI27477115, Length=172, Percent_Identity=31.3953488372093, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI73747917, Length=172, Percent_Identity=29.6511627906977, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=40.6862745098039, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787500, Length=201, Percent_Identity=36.318407960199, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI87081709, Length=203, Percent_Identity=35.9605911330049, Blast_Score=114, Evalue=4e-27, Organism=Escherichia coli, GI1789962, Length=196, Percent_Identity=35.7142857142857, Blast_Score=110, Evalue=8e-26, Organism=Escherichia coli, GI1787758, Length=201, Percent_Identity=36.318407960199, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1788506, Length=200, Percent_Identity=36, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787089, Length=216, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787029, Length=203, Percent_Identity=33.4975369458128, Blast_Score=96, Evalue=1e-21, Organism=Escherichia coli, GI1786398, Length=221, Percent_Identity=33.9366515837104, Blast_Score=94, Evalue=5e-21, Organism=Escherichia coli, GI1788225, Length=214, Percent_Identity=30.3738317757009, Blast_Score=94, Evalue=5e-21, Organism=Escherichia coli, GI1787547, Length=201, Percent_Identity=28.3582089552239, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI145693107, Length=234, Percent_Identity=31.6239316239316, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI48994997, Length=213, Percent_Identity=29.5774647887324, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788761, Length=206, Percent_Identity=32.0388349514563, Blast_Score=86, Evalue=1e-18, Organism=Escherichia coli, GI87081834, Length=215, Percent_Identity=29.3023255813954, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790739, Length=224, Percent_Identity=30.8035714285714, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1789890, Length=201, Percent_Identity=33.8308457711443, Blast_Score=84, Evalue=5e-18, Organism=Escherichia coli, GI87082267, Length=157, Percent_Identity=36.3057324840764, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786803, Length=208, Percent_Identity=30.2884615384615, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788165, Length=204, Percent_Identity=30.3921568627451, Blast_Score=81, Evalue=4e-17, Organism=Escherichia coli, GI1789864, Length=222, Percent_Identity=28.8288288288288, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1789672, Length=218, Percent_Identity=29.8165137614679, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786872, Length=214, Percent_Identity=28.5046728971963, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI48994943, Length=192, Percent_Identity=29.6875, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1787712, Length=203, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1787759, Length=215, Percent_Identity=33.953488372093, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788450, Length=205, Percent_Identity=29.7560975609756, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI1790162, Length=215, Percent_Identity=26.9767441860465, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1790467, Length=207, Percent_Identity=30.4347826086957, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI48995001, Length=211, Percent_Identity=26.5402843601896, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789991, Length=213, Percent_Identity=27.6995305164319, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082268, Length=200, Percent_Identity=27, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787370, Length=198, Percent_Identity=29.2929292929293, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI87081782, Length=196, Percent_Identity=27.0408163265306, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789873, Length=207, Percent_Identity=30.9178743961353, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786703, Length=198, Percent_Identity=31.3131313131313, Blast_Score=71, Evalue=4e-14, Organism=Escherichia coli, GI1786253, Length=169, Percent_Identity=33.7278106508876, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1789032, Length=223, Percent_Identity=28.6995515695067, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1786654, Length=172, Percent_Identity=32.5581395348837, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI87081791, Length=200, Percent_Identity=28, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1788644, Length=116, Percent_Identity=31.0344827586207, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1786345, Length=212, Percent_Identity=31.6037735849057, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI48994883, Length=210, Percent_Identity=29.5238095238095, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789963, Length=235, Percent_Identity=25.9574468085106, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790534, Length=212, Percent_Identity=31.1320754716981, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789593, Length=204, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=7e-13, Organism=Escherichia coli, GI1787164, Length=207, Percent_Identity=28.0193236714976, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1786698, Length=204, Percent_Identity=27.9411764705882, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787105, Length=199, Percent_Identity=29.6482412060301, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1790525, Length=203, Percent_Identity=29.064039408867, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789586, Length=198, Percent_Identity=27.7777777777778, Blast_Score=63, Evalue=1e-11, Organism=Escherichia coli, GI1788897, Length=207, Percent_Identity=25.1207729468599, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI2367384, Length=199, Percent_Identity=25.6281407035176, Blast_Score=61, Evalue=5e-11, Organism=Escherichia coli, GI1787143, Length=170, Percent_Identity=29.4117647058824, Blast_Score=60, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17565938, Length=194, Percent_Identity=32.4742268041237, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17543740, Length=190, Percent_Identity=30.5263157894737, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI115533592, Length=208, Percent_Identity=32.2115384615385, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI212646699, Length=199, Percent_Identity=32.1608040201005, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI115535101, Length=177, Percent_Identity=34.4632768361582, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17558664, Length=168, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17567265, Length=173, Percent_Identity=32.3699421965318, Blast_Score=71, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17541710, Length=191, Percent_Identity=31.9371727748691, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI25146777, Length=220, Percent_Identity=30.4545454545455, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71992290, Length=188, Percent_Identity=28.7234042553192, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115534520, Length=222, Percent_Identity=29.2792792792793, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI115533608, Length=181, Percent_Identity=30.939226519337, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193211017, Length=188, Percent_Identity=30.8510638297872, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193211015, Length=188, Percent_Identity=30.8510638297872, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992285, Length=205, Percent_Identity=28.2926829268293, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17510237, Length=212, Percent_Identity=22.6415094339623, Blast_Score=63, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=170, Percent_Identity=31.1764705882353, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6323217, Length=195, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=9e-12, Organism=Drosophila melanogaster, GI85724858, Length=185, Percent_Identity=30.8108108108108, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI85724856, Length=185, Percent_Identity=30.8108108108108, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24580547, Length=185, Percent_Identity=30.8108108108108, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24580551, Length=185, Percent_Identity=30.8108108108108, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24580549, Length=185, Percent_Identity=30.8108108108108, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24580545, Length=185, Percent_Identity=30.8108108108108, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI161076682, Length=205, Percent_Identity=29.7560975609756, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI161076684, Length=205, Percent_Identity=29.7560975609756, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24581617, Length=205, Percent_Identity=29.7560975609756, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24581615, Length=205, Percent_Identity=29.7560975609756, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI17136662, Length=209, Percent_Identity=28.7081339712919, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24653245, Length=204, Percent_Identity=30.3921568627451, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI281363262, Length=206, Percent_Identity=30.5825242718447, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015858 - InterPro: IPR003593 - InterPro: IPR014137 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.24 [H]
Molecular weight: Translated: 23025; Mature: 23025
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRADNVTMRFGTTTVLDNITLELPRRHLLGLIGPSGSGKTTLAGLLSGRLAPTSGTVTI CCCCCCEEEEECCHHHHHHHHHHCCHHHHHEEECCCCCCHHHHHHHHHCCCCCCCCEEEE DNEPVPHNRTHRRTDIVSISQQPRDACNPNWTLRTIIGEPLAIAGELSTEQIARRVEECA CCCCCCCCCCCCHHHEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHH ARALLSPSLLDRLPSHVSDGQLQRACIARALVIDPAFLICDEPTSMLDPLATAAVVDLLR HHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHH RIAHEGAGVLFISHDHRLLRACTDEVVQIGGEK HHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MLRADNVTMRFGTTTVLDNITLELPRRHLLGLIGPSGSGKTTLAGLLSGRLAPTSGTVTI CCCCCCEEEEECCHHHHHHHHHHCCHHHHHEEECCCCCCHHHHHHHHHCCCCCCCCEEEE DNEPVPHNRTHRRTDIVSISQQPRDACNPNWTLRTIIGEPLAIAGELSTEQIARRVEECA CCCCCCCCCCCCHHHEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHH ARALLSPSLLDRLPSHVSDGQLQRACIARALVIDPAFLICDEPTSMLDPLATAAVVDLLR HHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHH RIAHEGAGVLFISHDHRLLRACTDEVVQIGGEK HHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]