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The map label for this gene is sdrF [H]

Identifier: 38234642

GI number: 38234642

Start: 2141760

End: 2144615

Strand: Direct

Name: sdrF [H]

Synonym: DIP2093

Alternate gene names: 38234642

Gene position: 2141760-2144615 (Clockwise)

Preceding gene: 38234641

Following gene: 38234655

Centisome position: 86.06

GC content: 49.44

Gene sequence:

>2856_bases
ATGAACAGTCCTACTGGTTCACCAAAAATAGTCAAAACACCCACAAAGCGGCTTTCACGTAAGGCTGTAGCCCTAATGGC
CACTCTAGGCCTCAGTGCCGGCCATTTAATCATTAGCGATAACACCATCGCTGGTGCTGCCGTAGATAATGGATCCGCCT
CATTCACCTCTAACAATAACGCACGTTTTGCGAATGAGATTTTCTTTTTCGATTTTGGTAAGTTAGCTTCTGGAGAAGAA
CGTCAAGACACTTGGGGAGCTCAGGAAAAAACAAATAATGAAGCCGAGTTTTACGGCAAACGTATCAAATCTGGTGATAG
CTATACTTATAAAGAAGTCGACGGATTACCCAAAGGTCTTGAAGTCACAGTAACAGTCAATAGCGTGACCGCACTGCATG
ACGACGCAGTATACCCCGACAATGGACCTAAAGCAGGACAGAAAATCGATGATGGTATCTGGGCTCGAACAGTCACATGG
AATGATTTTTTCCGTCCCCTGAATTTGTCCAGCCCAGGCAGCATCGACCGAGATAAAAAACGTAGCAACGAATGGTTCGA
TGCGGATACACTCTACCCAAGCGATCCCGGATCAATGCTGCAGATTAGCAATTACCTAGATCCACAAGGTTTTGCAAATA
ACGCTGATCATCAATCCAATCAAGGGTACAAATTCAGCATTAATGTGGAAGGTAAACTTAACGGCAAACCAGTTGATCTC
GACCTCTTTGCTTCTGACGGTGAATCCACTGGTATCAAAGTCGAGGACCACGACAACCCATATGGTTTAAAGGATAAAGG
TCAAGTTGTTAAGGGGGGAGTCCCAGAAAATCTGCAGCTTACTCCTAATGGTGAAGGCGGATGGGTTGTCATTCAGGATC
TCGTAGGTAAAGACAAACGCTACTATTTCACAGATAGCAAACCTACCGTACCGCAGAAAGTTCCTGAGGGCGTTGCCCCT
TACAAGCCGATTGAAGTTGAACCTGACAAGGTGTGGACTGAGCAAAACGGTGCAAAGACCTACGGCTGGGTGGACACTGA
GCTGGACGAACAGGGTGGCCCTTGGAAGGCTATTCCGATGTCACAGCCACTACTAGTCAGCCGTGGTGCTACTCAAATCA
GTGTCGAACTGGACAATCATGCACGCGGTAAAACAGGATCGCGCCAAGGTGTAGTTGCGGGCATTTTTCTCCCCACGGAT
CAGGGTGATGCCCCTGAATCTTATGGTGAAGCAAGCCATATTTTGACCAACTGGAAAGAAACAGGTTCACCAAAGAACAA
CCCAAACATCGCGTTCCAGGACGGCAACAAAGTGGGATCATATATCGCCGAGTTTGATGGAGGAAAAAATTGGACCACTG
ACCCAGATAATGCCAAGGGTGACGACGAAGAGGATCTAAATCCAGATTTCTTTAAATCTGGATTTGAAAACAGCAATGGC
AAGGTAACAATCCCAGCAGTTGCAAAGAACAGCGCAGTAGTTGCGTGGGTTGATCTCAACCAAGATGGAAAATTCGAAGA
TGATGAACGTCGTGTCGGAAAAGACAATGGAGATGGCACATTCACATTCGATTGGAGCGATGCTCAAAAGACGCCCCAAC
CAGACAGCGCAATATACGCACGTATTCGTGTTGGTGGGGAAGGAACATCTGCTGACCAAATCAAGGATGCTAACGGCACC
ATAACAGGTGGTGAAATCGAGGATCTTAAATTCACGATTGATAAAAAAGTACCAGCTGTAACCCCATCGGTAACTGTCGG
TGACTACGTCTGGCACGACGCAAACCACAACGGAATCCAAGACGACAACGAACAAGGCCTCGCCGGCGTAACCCTAGAAC
TCTACGGCCCTAACGGCGAAGCAGTCACCGACGTCAACGGCAACCCTGTGGAAACCGTAACCACCAAAGCGGACGGAAAG
TACTCCTTCGAGAACCTCCCAGTCCTTAAAAACGGCGAACAATACACCGTCAAGGTCGTCGACGTCCCTGAAGGATACAA
GCCAACAAAGGAAAACCAAGGAACCGGATCACTCGCAAGGTTCAAAGACTCCTCAACGGGATCCGCTCAAACCATCCCAG
GCACCCTGAGTGAAAACGGGGCAAAAGACCTCACTTTAGACTTCGGCTTCATCAAAACAGACGCCCCAGTCAACCCATCG
GTAACTGTCGGCGACTACGTCTGGCACGACGCAAACCACAACGGAATCCAAGACGACAACGAACAAGGCCTCGCCGGCGT
AACCCTAGAACTCTACGGCCCTAACGGCGAAGCAGTCACCGACGTCAACGGCAACCCTGTGGAAACCGTAACCACCAAAG
CGGACGGAAAGTACTCCTTCGAGAACCTCCCAGTCCTTAAAAACGGCGAACAATACACCGTCAAGGTCGTCGACGTCCCT
GAAGGATACAAGCCAACAAAGGAAAACCAAGGAACCGGATCACTCGCAAGGTTCAAAGACTCCTCAACGGGATCCGCTCA
AACCATCCCAGGCACCCTGAGTGAAAACGGGGCAAAAGACCTCACCTTAGACTTCGGCTTCATCAAAACAGACGCCCCAG
TCAACCCATCGATGAATTGGTTAATGCCTTTGGCCCCACTAGCGGTACTCCCGTTGATTCCGCTGTTGAGCCAGCAAATT
GGTGGATCCTCAGCACCTAACCCAGGAACACCTCAAGCTACTGCGCCTCAGACTTCTGCCCCTACTGCTGATAAACCAGC
ACAGACGCAGAAACCGCAAAAGCCCAAGAACAAGCAGCTGGCTGCGACTGGCGCTAGCGTTCTCGGTGTACTAGCCGCAG
CATTGGCAATGATTGCTGGTGGCGTACTAGTTCTCCGCTCCAGAAAAGAAAACTAA

Upstream 100 bases:

>100_bases
ATCGCTTAAAGTATCCCACCACCAATTTTGAATTTCCACACCATTATCAAAGGTGCTATAATTATATATTTAAGCTTCTC
ACCCCGAAAGGATTCCCCTC

Downstream 100 bases:

>100_bases
TCAATAGTTGCTAGCCAAACGATAAGGATCTCGCTCCGGTATAAGACCGGAGCGAGATCCTTATAATTCTTTTCAATACC
ATGCCAGTAGGGGCGGCACC

Product: Sdr family related adhesin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 951; Mature: 951

Protein sequence:

>951_residues
MNSPTGSPKIVKTPTKRLSRKAVALMATLGLSAGHLIISDNTIAGAAVDNGSASFTSNNNARFANEIFFFDFGKLASGEE
RQDTWGAQEKTNNEAEFYGKRIKSGDSYTYKEVDGLPKGLEVTVTVNSVTALHDDAVYPDNGPKAGQKIDDGIWARTVTW
NDFFRPLNLSSPGSIDRDKKRSNEWFDADTLYPSDPGSMLQISNYLDPQGFANNADHQSNQGYKFSINVEGKLNGKPVDL
DLFASDGESTGIKVEDHDNPYGLKDKGQVVKGGVPENLQLTPNGEGGWVVIQDLVGKDKRYYFTDSKPTVPQKVPEGVAP
YKPIEVEPDKVWTEQNGAKTYGWVDTELDEQGGPWKAIPMSQPLLVSRGATQISVELDNHARGKTGSRQGVVAGIFLPTD
QGDAPESYGEASHILTNWKETGSPKNNPNIAFQDGNKVGSYIAEFDGGKNWTTDPDNAKGDDEEDLNPDFFKSGFENSNG
KVTIPAVAKNSAVVAWVDLNQDGKFEDDERRVGKDNGDGTFTFDWSDAQKTPQPDSAIYARIRVGGEGTSADQIKDANGT
ITGGEIEDLKFTIDKKVPAVTPSVTVGDYVWHDANHNGIQDDNEQGLAGVTLELYGPNGEAVTDVNGNPVETVTTKADGK
YSFENLPVLKNGEQYTVKVVDVPEGYKPTKENQGTGSLARFKDSSTGSAQTIPGTLSENGAKDLTLDFGFIKTDAPVNPS
VTVGDYVWHDANHNGIQDDNEQGLAGVTLELYGPNGEAVTDVNGNPVETVTTKADGKYSFENLPVLKNGEQYTVKVVDVP
EGYKPTKENQGTGSLARFKDSSTGSAQTIPGTLSENGAKDLTLDFGFIKTDAPVNPSMNWLMPLAPLAVLPLIPLLSQQI
GGSSAPNPGTPQATAPQTSAPTADKPAQTQKPQKPKNKQLAATGASVLGVLAAALAMIAGGVLVLRSRKEN

Sequences:

>Translated_951_residues
MNSPTGSPKIVKTPTKRLSRKAVALMATLGLSAGHLIISDNTIAGAAVDNGSASFTSNNNARFANEIFFFDFGKLASGEE
RQDTWGAQEKTNNEAEFYGKRIKSGDSYTYKEVDGLPKGLEVTVTVNSVTALHDDAVYPDNGPKAGQKIDDGIWARTVTW
NDFFRPLNLSSPGSIDRDKKRSNEWFDADTLYPSDPGSMLQISNYLDPQGFANNADHQSNQGYKFSINVEGKLNGKPVDL
DLFASDGESTGIKVEDHDNPYGLKDKGQVVKGGVPENLQLTPNGEGGWVVIQDLVGKDKRYYFTDSKPTVPQKVPEGVAP
YKPIEVEPDKVWTEQNGAKTYGWVDTELDEQGGPWKAIPMSQPLLVSRGATQISVELDNHARGKTGSRQGVVAGIFLPTD
QGDAPESYGEASHILTNWKETGSPKNNPNIAFQDGNKVGSYIAEFDGGKNWTTDPDNAKGDDEEDLNPDFFKSGFENSNG
KVTIPAVAKNSAVVAWVDLNQDGKFEDDERRVGKDNGDGTFTFDWSDAQKTPQPDSAIYARIRVGGEGTSADQIKDANGT
ITGGEIEDLKFTIDKKVPAVTPSVTVGDYVWHDANHNGIQDDNEQGLAGVTLELYGPNGEAVTDVNGNPVETVTTKADGK
YSFENLPVLKNGEQYTVKVVDVPEGYKPTKENQGTGSLARFKDSSTGSAQTIPGTLSENGAKDLTLDFGFIKTDAPVNPS
VTVGDYVWHDANHNGIQDDNEQGLAGVTLELYGPNGEAVTDVNGNPVETVTTKADGKYSFENLPVLKNGEQYTVKVVDVP
EGYKPTKENQGTGSLARFKDSSTGSAQTIPGTLSENGAKDLTLDFGFIKTDAPVNPSMNWLMPLAPLAVLPLIPLLSQQI
GGSSAPNPGTPQATAPQTSAPTADKPAQTQKPQKPKNKQLAATGASVLGVLAAALAMIAGGVLVLRSRKEN
>Mature_951_residues
MNSPTGSPKIVKTPTKRLSRKAVALMATLGLSAGHLIISDNTIAGAAVDNGSASFTSNNNARFANEIFFFDFGKLASGEE
RQDTWGAQEKTNNEAEFYGKRIKSGDSYTYKEVDGLPKGLEVTVTVNSVTALHDDAVYPDNGPKAGQKIDDGIWARTVTW
NDFFRPLNLSSPGSIDRDKKRSNEWFDADTLYPSDPGSMLQISNYLDPQGFANNADHQSNQGYKFSINVEGKLNGKPVDL
DLFASDGESTGIKVEDHDNPYGLKDKGQVVKGGVPENLQLTPNGEGGWVVIQDLVGKDKRYYFTDSKPTVPQKVPEGVAP
YKPIEVEPDKVWTEQNGAKTYGWVDTELDEQGGPWKAIPMSQPLLVSRGATQISVELDNHARGKTGSRQGVVAGIFLPTD
QGDAPESYGEASHILTNWKETGSPKNNPNIAFQDGNKVGSYIAEFDGGKNWTTDPDNAKGDDEEDLNPDFFKSGFENSNG
KVTIPAVAKNSAVVAWVDLNQDGKFEDDERRVGKDNGDGTFTFDWSDAQKTPQPDSAIYARIRVGGEGTSADQIKDANGT
ITGGEIEDLKFTIDKKVPAVTPSVTVGDYVWHDANHNGIQDDNEQGLAGVTLELYGPNGEAVTDVNGNPVETVTTKADGK
YSFENLPVLKNGEQYTVKVVDVPEGYKPTKENQGTGSLARFKDSSTGSAQTIPGTLSENGAKDLTLDFGFIKTDAPVNPS
VTVGDYVWHDANHNGIQDDNEQGLAGVTLELYGPNGEAVTDVNGNPVETVTTKADGKYSFENLPVLKNGEQYTVKVVDVP
EGYKPTKENQGTGSLARFKDSSTGSAQTIPGTLSENGAKDLTLDFGFIKTDAPVNPSMNWLMPLAPLAVLPLIPLLSQQI
GGSSAPNPGTPQATAPQTSAPTADKPAQTQKPQKPKNKQLAATGASVLGVLAAALAMIAGGVLVLRSRKEN

Specific function: Binds to type I collagen via alpha-2(I) or alpha-1(I) chains, although its affinity for the alpha-1(I) chain is significantly higher. Involved in bacterial adherence to transcutaneous drivelines from explanted ventricular assist devices [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall; Peptidoglycan-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 CNA-B domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR008454
- InterPro:   IPR011252
- InterPro:   IPR005877
- InterPro:   IPR019948
- InterPro:   IPR013783
- InterPro:   IPR019931
- InterPro:   IPR001899 [H]

Pfam domain/function: PF05738 Cna_B; PF00746 Gram_pos_anchor; PF04650 YSIRK_signal [H]

EC number: NA

Molecular weight: Translated: 101862; Mature: 101862

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPTGSPKIVKTPTKRLSRKAVALMATLGLSAGHLIISDNTIAGAAVDNGSASFTSNNN
CCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCCEEECCCC
ARFANEIFFFDFGKLASGEERQDTWGAQEKTNNEAEFYGKRIKSGDSYTYKEVDGLPKGL
CEEEEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEHHHCCCCCCE
EVTVTVNSVTALHDDAVYPDNGPKAGQKIDDGIWARTVTWNDFFRPLNLSSPGSIDRDKK
EEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCHHH
RSNEWFDADTLYPSDPGSMLQISNYLDPQGFANNADHQSNQGYKFSINVEGKLNGKPVDL
HCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEE
DLFASDGESTGIKVEDHDNPYGLKDKGQVVKGGVPENLQLTPNGEGGWVVIQDLVGKDKR
EEEECCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCEEEECCCCCEEEEEHHHCCCCE
YYFTDSKPTVPQKVPEGVAPYKPIEVEPDKVWTEQNGAKTYGWVDTELDEQGGPWKAIPM
EEECCCCCCCHHHCCCCCCCCCCEEECCCCEEECCCCCEEECEEECCCCCCCCCEEECCC
SQPLLVSRGATQISVELDNHARGKTGSRQGVVAGIFLPTDQGDAPESYGEASHILTNWKE
CCCEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHCCHHHHHHCHHH
TGSPKNNPNIAFQDGNKVGSYIAEFDGGKNWTTDPDNAKGDDEEDLNPDFFKSGFENSNG
CCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
KVTIPAVAKNSAVVAWVDLNQDGKFEDDERRVGKDNGDGTFTFDWSDAQKTPQPDSAIYA
EEEEEEEECCCEEEEEEECCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEE
RIRVGGEGTSADQIKDANGTITGGEIEDLKFTIDKKVPAVTPSVTVGDYVWHDANHNGIQ
EEEECCCCCCHHHEECCCCEEECCEEEEEEEEECCCCCCCCCCEEECCEEEECCCCCCCC
DDNEQGLAGVTLELYGPNGEAVTDVNGNPVETVTTKADGKYSFENLPVLKNGEQYTVKVV
CCCCCCEEEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEEECCCEEEEEEE
DVPEGYKPTKENQGTGSLARFKDSSTGSAQTIPGTLSENGAKDLTLDFGFIKTDAPVNPS
ECCCCCCCCCCCCCCCCEEEECCCCCCCCEECCCCCCCCCCCEEEEEEEEEECCCCCCCC
VTVGDYVWHDANHNGIQDDNEQGLAGVTLELYGPNGEAVTDVNGNPVETVTTKADGKYSF
EEECCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCC
ENLPVLKNGEQYTVKVVDVPEGYKPTKENQGTGSLARFKDSSTGSAQTIPGTLSENGAKD
CCCCEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCEECCCCCCCCCCCE
LTLDFGFIKTDAPVNPSMNWLMPLAPLAVLPLIPLLSQQIGGSSAPNPGTPQATAPQTSA
EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PTADKPAQTQKPQKPKNKQLAATGASVLGVLAAALAMIAGGVLVLRSRKEN
CCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
>Mature Secondary Structure
MNSPTGSPKIVKTPTKRLSRKAVALMATLGLSAGHLIISDNTIAGAAVDNGSASFTSNNN
CCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCCEEECCCC
ARFANEIFFFDFGKLASGEERQDTWGAQEKTNNEAEFYGKRIKSGDSYTYKEVDGLPKGL
CEEEEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEHHHCCCCCCE
EVTVTVNSVTALHDDAVYPDNGPKAGQKIDDGIWARTVTWNDFFRPLNLSSPGSIDRDKK
EEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCHHH
RSNEWFDADTLYPSDPGSMLQISNYLDPQGFANNADHQSNQGYKFSINVEGKLNGKPVDL
HCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEE
DLFASDGESTGIKVEDHDNPYGLKDKGQVVKGGVPENLQLTPNGEGGWVVIQDLVGKDKR
EEEECCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCEEEECCCCCEEEEEHHHCCCCE
YYFTDSKPTVPQKVPEGVAPYKPIEVEPDKVWTEQNGAKTYGWVDTELDEQGGPWKAIPM
EEECCCCCCCHHHCCCCCCCCCCEEECCCCEEECCCCCEEECEEECCCCCCCCCEEECCC
SQPLLVSRGATQISVELDNHARGKTGSRQGVVAGIFLPTDQGDAPESYGEASHILTNWKE
CCCEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHCCHHHHHHCHHH
TGSPKNNPNIAFQDGNKVGSYIAEFDGGKNWTTDPDNAKGDDEEDLNPDFFKSGFENSNG
CCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
KVTIPAVAKNSAVVAWVDLNQDGKFEDDERRVGKDNGDGTFTFDWSDAQKTPQPDSAIYA
EEEEEEEECCCEEEEEEECCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEE
RIRVGGEGTSADQIKDANGTITGGEIEDLKFTIDKKVPAVTPSVTVGDYVWHDANHNGIQ
EEEECCCCCCHHHEECCCCEEECCEEEEEEEEECCCCCCCCCCEEECCEEEECCCCCCCC
DDNEQGLAGVTLELYGPNGEAVTDVNGNPVETVTTKADGKYSFENLPVLKNGEQYTVKVV
CCCCCCEEEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEEECCCEEEEEEE
DVPEGYKPTKENQGTGSLARFKDSSTGSAQTIPGTLSENGAKDLTLDFGFIKTDAPVNPS
ECCCCCCCCCCCCCCCCEEEECCCCCCCCEECCCCCCCCCCCEEEEEEEEEECCCCCCCC
VTVGDYVWHDANHNGIQDDNEQGLAGVTLELYGPNGEAVTDVNGNPVETVTTKADGKYSF
EEECCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCC
ENLPVLKNGEQYTVKVVDVPEGYKPTKENQGTGSLARFKDSSTGSAQTIPGTLSENGAKD
CCCCEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCEECCCCCCCCCCCE
LTLDFGFIKTDAPVNPSMNWLMPLAPLAVLPLIPLLSQQIGGSSAPNPGTPQATAPQTSA
EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PTADKPAQTQKPQKPKNKQLAATGASVLGVLAAALAMIAGGVLVLRSRKEN
CCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10878118 [H]