Click here to switch to the map view.

The map label for this gene is ygbJ [H]

Identifier: 38234637

GI number: 38234637

Start: 2130534

End: 2131430

Strand: Reverse

Name: ygbJ [H]

Synonym: DIP2079

Alternate gene names: 38234637

Gene position: 2131430-2130534 (Counterclockwise)

Preceding gene: 38234638

Following gene: 38234636

Centisome position: 85.65

GC content: 55.3

Gene sequence:

>897_bases
ATGTCTTTCACTGTTACTGTCGTCGGCATGGGGGCTATGGGACTTCCTATGGCCACGAACCTTGCCAAGAATTTCACGGT
TCGAGGCGTCGACATCGCTCAACCGCGTCTGGAGCTCGCTAAGGCAGCCGGTATCGAGACCTATACAAACGCTTCAGATG
CCGCCGAGGGCGCTGATGTCGTTCTCCTCGCCGTCCGAAACGAAGCACAGCTTCTTGATGCCCTCTTCGGTGACGGAGAT
ATTGCTTCCCACATGACACCGGGTGCTGTAGTGCTGTTGACTTCTACAGTAGGCATCGAAGCTGTCGAAAATGCCGCAAA
AAGGCTAAAAGAAATCGGCCTAAACATCGTGGATGCTCCGGTTTCTGGTGGTCCAGTCCGCGCAGGAGAAGGCGACTTGC
TGGTGACAGCTGGCGCTGAACCTACCGTCGTAGAAAAGATTCGTCCGGTACTGGAAGAGATGGCTTCTAACTTGGTCATC
GTTGGAGATGCCCCGGGTAAAGGGCAGGCGCTAAAGACTGTCAATCAGCTCCTGTGTGGTGTACACATAGCTGCTGCAGG
AGAGGCTCTAGCTCTCGCGGACCGTTTGGGGCTTGACCCAGCCGCGGCACTTGATGCATTGATGAGCGGCGCTGCTTCCT
CGTTCATGCTCGGCGATCGTGGCCAGCGAATGTTGGAGGCATATAACGATGACGGGGCTGAGGTGAAGAGTCGCCTGGAT
ATTTTTGTTAAGGACATGGGTATTGTGACTGCTGCAGCCAAGAAAGCAGGAATTGGTGTGCCGCTTGCGGCAGCTGCTGA
ACAGCAGTACCTCGCTGGCCTTGTCCGTGGACAAGGTGCTATGGATGATTCCTCAATTATCCGTATCGTGGCTCCGGCCA
AGGCGCAGGACGCATAA

Upstream 100 bases:

>100_bases
TGGACACGTTGTCTGCAAGTACTTCCAGTTAGTCCTTCGATGCTCTAACTGAGTCTCTACGCAAATAAGAAATTATCTCA
ACACTTTTTAGGAGAATACA

Downstream 100 bases:

>100_bases
CCGTGACGGGCATGGCGCTCCTAGGACTCGGCGTCGTAGCAGTCGCGGTCCTTCTATTGCTCGTGATTTGGCTACGGGTA
CCGGCCTTCGTGGCATTAAT

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSFTVTVVGMGAMGLPMATNLAKNFTVRGVDIAQPRLELAKAAGIETYTNASDAAEGADVVLLAVRNEAQLLDALFGDGD
IASHMTPGAVVLLTSTVGIEAVENAAKRLKEIGLNIVDAPVSGGPVRAGEGDLLVTAGAEPTVVEKIRPVLEEMASNLVI
VGDAPGKGQALKTVNQLLCGVHIAAAGEALALADRLGLDPAAALDALMSGAASSFMLGDRGQRMLEAYNDDGAEVKSRLD
IFVKDMGIVTAAAKKAGIGVPLAAAAEQQYLAGLVRGQGAMDDSSIIRIVAPAKAQDA

Sequences:

>Translated_298_residues
MSFTVTVVGMGAMGLPMATNLAKNFTVRGVDIAQPRLELAKAAGIETYTNASDAAEGADVVLLAVRNEAQLLDALFGDGD
IASHMTPGAVVLLTSTVGIEAVENAAKRLKEIGLNIVDAPVSGGPVRAGEGDLLVTAGAEPTVVEKIRPVLEEMASNLVI
VGDAPGKGQALKTVNQLLCGVHIAAAGEALALADRLGLDPAAALDALMSGAASSFMLGDRGQRMLEAYNDDGAEVKSRLD
IFVKDMGIVTAAAKKAGIGVPLAAAAEQQYLAGLVRGQGAMDDSSIIRIVAPAKAQDA
>Mature_297_residues
SFTVTVVGMGAMGLPMATNLAKNFTVRGVDIAQPRLELAKAAGIETYTNASDAAEGADVVLLAVRNEAQLLDALFGDGDI
ASHMTPGAVVLLTSTVGIEAVENAAKRLKEIGLNIVDAPVSGGPVRAGEGDLLVTAGAEPTVVEKIRPVLEEMASNLVIV
GDAPGKGQALKTVNQLLCGVHIAAAGEALALADRLGLDPAAALDALMSGAASSFMLGDRGQRMLEAYNDDGAEVKSRLDI
FVKDMGIVTAAAKKAGIGVPLAAAAEQQYLAGLVRGQGAMDDSSIIRIVAPAKAQDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-hydroxyisobutyrate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI23308751, Length=300, Percent_Identity=27.3333333333333, Blast_Score=87, Evalue=1e-17,
Organism=Escherichia coli, GI1789092, Length=293, Percent_Identity=35.8361774744027, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1786719, Length=281, Percent_Identity=28.8256227758007, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI145693186, Length=285, Percent_Identity=29.4736842105263, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790315, Length=290, Percent_Identity=26.551724137931, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24655230, Length=305, Percent_Identity=26.2295081967213, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI19922568, Length=305, Percent_Identity=26.2295081967213, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002204
- InterPro:   IPR015815
- InterPro:   IPR008927
- InterPro:   IPR006115
- InterPro:   IPR013328
- InterPro:   IPR016040 [H]

Pfam domain/function: PF03446 NAD_binding_2 [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 30309; Mature: 30178

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTVTVVGMGAMGLPMATNLAKNFTVRGVDIAQPRLELAKAAGIETYTNASDAAEGADV
CCEEEEEEECCCCCCCHHHHHHHCCEEECEECCCHHHHHHHHCCCCCCCCCCCCCCCCCE
VLLAVRNEAQLLDALFGDGDIASHMTPGAVVLLTSTVGIEAVENAAKRLKEIGLNIVDAP
EEEEECCHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEECC
VSGGPVRAGEGDLLVTAGAEPTVVEKIRPVLEEMASNLVIVGDAPGKGQALKTVNQLLCG
CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHH
VHIAAAGEALALADRLGLDPAAALDALMSGAASSFMLGDRGQRMLEAYNDDGAEVKSRLD
HHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHH
IFVKDMGIVTAAAKKAGIGVPLAAAAEQQYLAGLVRGQGAMDDSSIIRIVAPAKAQDA
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure 
SFTVTVVGMGAMGLPMATNLAKNFTVRGVDIAQPRLELAKAAGIETYTNASDAAEGADV
CEEEEEEECCCCCCCHHHHHHHCCEEECEECCCHHHHHHHHCCCCCCCCCCCCCCCCCE
VLLAVRNEAQLLDALFGDGDIASHMTPGAVVLLTSTVGIEAVENAAKRLKEIGLNIVDAP
EEEEECCHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEECC
VSGGPVRAGEGDLLVTAGAEPTVVEKIRPVLEEMASNLVIVGDAPGKGQALKTVNQLLCG
CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHH
VHIAAAGEALALADRLGLDPAAALDALMSGAASSFMLGDRGQRMLEAYNDDGAEVKSRLD
HHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHH
IFVKDMGIVTAAAKKAGIGVPLAAAAEQQYLAGLVRGQGAMDDSSIIRIVAPAKAQDA
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]