| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is 38234577
Identifier: 38234577
GI number: 38234577
Start: 2066771
End: 2068348
Strand: Reverse
Name: 38234577
Synonym: DIP2013
Alternate gene names: NA
Gene position: 2068348-2066771 (Counterclockwise)
Preceding gene: 38234580
Following gene: 38234576
Centisome position: 83.11
GC content: 53.74
Gene sequence:
>1578_bases ATGACTGCACGGGGGTGTCGTCTGGCGACACTTGCAACGACTTTGACATTCTTTGTATCAAACGTCACACTTGCCTCAGT GTTTGCTGAAGAGTCACAGTATCATGCAGTCCAACTAGGAGAGAGTCCTCTCAGCGTTGACGGCCTTAGTATCCCAGAAC GTACGAGTATTGCCGTGCATGCATTGATGGGACTGCCTACGGGACAGCCGGCTAATGGTACAAAGCTCGATTCGATTGGC CTGCCAAAAGTAGATGGCATGTCGTTTACGCTCTACAGGGTTAACGAAATTGATCTGACTACGCAAGCGGGATGGGATGC GGCGTCGAAAATCAAGCTGGAAGAGCTCTATACAAACGGCCATCCAACCGACAAAGTAACCAAAGTCGCCACTAAGAAAA CCGAAGGCGGCGTGGCAAAATTTGATAACCTCACACCAGCCCTCTACCTCGTCGTTCAAGAGCTCAACGGCGCAGAGGCT GTGGTGCGTTCGCAACCGTTCTTGGTGGCAGCGCCACAGACAAACCCGACTGGCGACGGCTGGCTCCAAGACGTGCACGT GTATCCCAAGCACCAGGCTTTGTCTGAGCCGGTGAAAACTGCTGTGGATCCGGATGCCACGCAGCCTGGTTTCTCGGTGG GGGAGAACGTGAAGTATCGCGTGGCTACCAAGATTCCAGAGATCGCCTCGAACACTAAGTTCGAGGGTTTCACCGTGGCG GATAAACTCCCCGCTGAATTGGGCAAACCAGACACTAATAAAATAACGGTAACCCTTGGGGGAAAGCCGATTAATTCCAC CGACGTCTCTGTTCAAACCTATCAAGTCGGTGACCGCACCGTACTCAGCGTGCAACTAGCCGGCGCAACACTCCAGTCCT TGGACCAGCATAAAGATCAAGAACTAGTCGTCGAGTTTGAGGCACCTGTGACCAAGCAGCCAGAAAACGGCCAGCTAGAT AACCAAGCATGGGTACTACCGAGTAACCCCACTGCTCAGTGGGATCCAGAAGAAAGCGGCGATGCTGCGTTGCGCGGTAT GCCGTCGTCACGCGTGAGTTCCAAGTTCGGCCAGATCACGATTGAGAAATCCTTTGACGGCAACACCCCAGGTGCCGATC GCACCGCGACGTTCCAGCTGCATCGTTGCGAGGCCGACGGCAGCCTAGTCAAGTCCGACCCACCGATCTCCCTTGATGGC AAGCAGGAGTTTGTTACCGGCCAAGATGGTAAGGCCGTACTCAGCGGTATCCACTTGGGCACCTTGCAGCTCGAGTCCAA TGTTATGAAATATACCGACGCGTGGGCCGGCAAGGGAACCGAATTCTGCCTGGTAGAAACAGCTACTGCCAGCGGATATG AGCTGTTGCCTAAGCCAGTGATAGTAAAGCTGGAAGCCAACGAGTCTACCAACGTGTTGGTAGAACAAAAAGTAAAGATC GACAACAAGAAAAAGAACGCCGGATTTGAACTGCCACTCACAGGTGGTTCGGGGCGCATCGCCATCACTATCGGCATCGT TGGTTTGCTCGTCGCCCTCGCAAGCTATGTCTTATCGCGTAGGAAGGACAACCGCTAG
Upstream 100 bases:
>100_bases GGGTTATACATTCTATCGATATACTATTTTCTTTTTATGCTTTTTTGGTTTAGGGTAATGTGAAAGTACTTTTTGCCAAA TAAATAAGTTGAGGGATTGT
Downstream 100 bases:
>100_bases ATGAGGCACCGGGCAGGTGAACATCGAAACGTTTTTGCCATCCTCGCATTCGTCATCGCGATCGTCTCAGTGGGATTTTT GCTCTACCCCGTGGCCGCAA
Product: putative surface-anchored fimbrial subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 525; Mature: 524
Protein sequence:
>525_residues MTARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVHALMGLPTGQPANGTKLDSIG LPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNGHPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEA VVRSQPFLVAAPQTNPTGDGWLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVA DKLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQELVVEFEAPVTKQPENGQLD NQAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQITIEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDG KQEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKI DNKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR
Sequences:
>Translated_525_residues MTARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVHALMGLPTGQPANGTKLDSIG LPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNGHPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEA VVRSQPFLVAAPQTNPTGDGWLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVA DKLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQELVVEFEAPVTKQPENGQLD NQAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQITIEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDG KQEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKI DNKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR >Mature_524_residues TARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVHALMGLPTGQPANGTKLDSIGL PKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNGHPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEAV VRSQPFLVAAPQTNPTGDGWLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVAD KLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQELVVEFEAPVTKQPENGQLDN QAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQITIEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDGK QEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKID NKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR
Specific function: Major fimbrial subunit of A.naeslundii [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall; Peptidoglycan-anchor (Potential). Fimbrium (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008454 - InterPro: IPR019948 - InterPro: IPR019931 - InterPro: IPR001899 [H]
Pfam domain/function: PF05738 Cna_B; PF00746 Gram_pos_anchor [H]
EC number: NA
Molecular weight: Translated: 56197; Mature: 56066
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS50847 GRAM_POS_ANCHORING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVH CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHEEE ALMGLPTGQPANGTKLDSIGLPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNG HHHCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHEEEEEHHHCCC HPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEAVVRSQPFLVAAPQTNPTGDG CCCHHHHHHHHCCCCCCCEECCCCCCEEEEEEHHCCCCHHHHCCCCEEEECCCCCCCCCC WLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVA CEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEEH DKLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQ HHCHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEECCHHHHHHHHCCCC ELVVEFEAPVTKQPENGQLDNQAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQIT EEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCEEE IEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDGKQEFVTGQDGKAVLSGIHLG EEECCCCCCCCCCCEEEEEEEEECCCCCEECCCCCCCCCCCHHEECCCCCHHEEEEEEEE TLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKI EEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCEECCCCEEEEEECCCCCCEEEEEEEEC DNKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR CCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVH CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHEEE ALMGLPTGQPANGTKLDSIGLPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNG HHHCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHEEEEEHHHCCC HPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEAVVRSQPFLVAAPQTNPTGDG CCCHHHHHHHHCCCCCCCEECCCCCCEEEEEEHHCCCCHHHHCCCCEEEECCCCCCCCCC WLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVA CEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEEH DKLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQ HHCHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEECCHHHHHHHHCCCC ELVVEFEAPVTKQPENGQLDNQAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQIT EEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCEEE IEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDGKQEFVTGQDGKAVLSGIHLG EEECCCCCCCCCCCEEEEEEEEECCCCCEECCCCCCCCCCCHHEECCCCCHHEEEEEEEE TLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKI EEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCEECCCCEEEEEECCCCCCEEEEEEEEC DNKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR CCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2900829 [H]