Definition Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome.
Accession NC_002935
Length 2,488,635

Click here to switch to the map view.

The map label for this gene is 38234577

Identifier: 38234577

GI number: 38234577

Start: 2066771

End: 2068348

Strand: Reverse

Name: 38234577

Synonym: DIP2013

Alternate gene names: NA

Gene position: 2068348-2066771 (Counterclockwise)

Preceding gene: 38234580

Following gene: 38234576

Centisome position: 83.11

GC content: 53.74

Gene sequence:

>1578_bases
ATGACTGCACGGGGGTGTCGTCTGGCGACACTTGCAACGACTTTGACATTCTTTGTATCAAACGTCACACTTGCCTCAGT
GTTTGCTGAAGAGTCACAGTATCATGCAGTCCAACTAGGAGAGAGTCCTCTCAGCGTTGACGGCCTTAGTATCCCAGAAC
GTACGAGTATTGCCGTGCATGCATTGATGGGACTGCCTACGGGACAGCCGGCTAATGGTACAAAGCTCGATTCGATTGGC
CTGCCAAAAGTAGATGGCATGTCGTTTACGCTCTACAGGGTTAACGAAATTGATCTGACTACGCAAGCGGGATGGGATGC
GGCGTCGAAAATCAAGCTGGAAGAGCTCTATACAAACGGCCATCCAACCGACAAAGTAACCAAAGTCGCCACTAAGAAAA
CCGAAGGCGGCGTGGCAAAATTTGATAACCTCACACCAGCCCTCTACCTCGTCGTTCAAGAGCTCAACGGCGCAGAGGCT
GTGGTGCGTTCGCAACCGTTCTTGGTGGCAGCGCCACAGACAAACCCGACTGGCGACGGCTGGCTCCAAGACGTGCACGT
GTATCCCAAGCACCAGGCTTTGTCTGAGCCGGTGAAAACTGCTGTGGATCCGGATGCCACGCAGCCTGGTTTCTCGGTGG
GGGAGAACGTGAAGTATCGCGTGGCTACCAAGATTCCAGAGATCGCCTCGAACACTAAGTTCGAGGGTTTCACCGTGGCG
GATAAACTCCCCGCTGAATTGGGCAAACCAGACACTAATAAAATAACGGTAACCCTTGGGGGAAAGCCGATTAATTCCAC
CGACGTCTCTGTTCAAACCTATCAAGTCGGTGACCGCACCGTACTCAGCGTGCAACTAGCCGGCGCAACACTCCAGTCCT
TGGACCAGCATAAAGATCAAGAACTAGTCGTCGAGTTTGAGGCACCTGTGACCAAGCAGCCAGAAAACGGCCAGCTAGAT
AACCAAGCATGGGTACTACCGAGTAACCCCACTGCTCAGTGGGATCCAGAAGAAAGCGGCGATGCTGCGTTGCGCGGTAT
GCCGTCGTCACGCGTGAGTTCCAAGTTCGGCCAGATCACGATTGAGAAATCCTTTGACGGCAACACCCCAGGTGCCGATC
GCACCGCGACGTTCCAGCTGCATCGTTGCGAGGCCGACGGCAGCCTAGTCAAGTCCGACCCACCGATCTCCCTTGATGGC
AAGCAGGAGTTTGTTACCGGCCAAGATGGTAAGGCCGTACTCAGCGGTATCCACTTGGGCACCTTGCAGCTCGAGTCCAA
TGTTATGAAATATACCGACGCGTGGGCCGGCAAGGGAACCGAATTCTGCCTGGTAGAAACAGCTACTGCCAGCGGATATG
AGCTGTTGCCTAAGCCAGTGATAGTAAAGCTGGAAGCCAACGAGTCTACCAACGTGTTGGTAGAACAAAAAGTAAAGATC
GACAACAAGAAAAAGAACGCCGGATTTGAACTGCCACTCACAGGTGGTTCGGGGCGCATCGCCATCACTATCGGCATCGT
TGGTTTGCTCGTCGCCCTCGCAAGCTATGTCTTATCGCGTAGGAAGGACAACCGCTAG

Upstream 100 bases:

>100_bases
GGGTTATACATTCTATCGATATACTATTTTCTTTTTATGCTTTTTTGGTTTAGGGTAATGTGAAAGTACTTTTTGCCAAA
TAAATAAGTTGAGGGATTGT

Downstream 100 bases:

>100_bases
ATGAGGCACCGGGCAGGTGAACATCGAAACGTTTTTGCCATCCTCGCATTCGTCATCGCGATCGTCTCAGTGGGATTTTT
GCTCTACCCCGTGGCCGCAA

Product: putative surface-anchored fimbrial subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MTARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVHALMGLPTGQPANGTKLDSIG
LPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNGHPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEA
VVRSQPFLVAAPQTNPTGDGWLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVA
DKLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQELVVEFEAPVTKQPENGQLD
NQAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQITIEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDG
KQEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKI
DNKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR

Sequences:

>Translated_525_residues
MTARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVHALMGLPTGQPANGTKLDSIG
LPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNGHPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEA
VVRSQPFLVAAPQTNPTGDGWLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVA
DKLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQELVVEFEAPVTKQPENGQLD
NQAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQITIEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDG
KQEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKI
DNKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR
>Mature_524_residues
TARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVHALMGLPTGQPANGTKLDSIGL
PKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNGHPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEAV
VRSQPFLVAAPQTNPTGDGWLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVAD
KLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQELVVEFEAPVTKQPENGQLDN
QAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQITIEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDGK
QEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKID
NKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR

Specific function: Major fimbrial subunit of A.naeslundii [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall; Peptidoglycan-anchor (Potential). Fimbrium (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008454
- InterPro:   IPR019948
- InterPro:   IPR019931
- InterPro:   IPR001899 [H]

Pfam domain/function: PF05738 Cna_B; PF00746 Gram_pos_anchor [H]

EC number: NA

Molecular weight: Translated: 56197; Mature: 56066

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50847 GRAM_POS_ANCHORING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHEEE
ALMGLPTGQPANGTKLDSIGLPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNG
HHHCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHEEEEEHHHCCC
HPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEAVVRSQPFLVAAPQTNPTGDG
CCCHHHHHHHHCCCCCCCEECCCCCCEEEEEEHHCCCCHHHHCCCCEEEECCCCCCCCCC
WLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVA
CEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEEH
DKLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQ
HHCHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEECCHHHHHHHHCCCC
ELVVEFEAPVTKQPENGQLDNQAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQIT
EEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCEEE
IEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDGKQEFVTGQDGKAVLSGIHLG
EEECCCCCCCCCCCEEEEEEEEECCCCCEECCCCCCCCCCCHHEECCCCCHHEEEEEEEE
TLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKI
EEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCEECCCCEEEEEECCCCCCEEEEEEEEC
DNKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR
CCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHEEE
ALMGLPTGQPANGTKLDSIGLPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNG
HHHCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHEEEEEHHHCCC
HPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEAVVRSQPFLVAAPQTNPTGDG
CCCHHHHHHHHCCCCCCCEECCCCCCEEEEEEHHCCCCHHHHCCCCEEEECCCCCCCCCC
WLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVA
CEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEEH
DKLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQ
HHCHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEECCHHHHHHHHCCCC
ELVVEFEAPVTKQPENGQLDNQAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQIT
EEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCEEE
IEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDGKQEFVTGQDGKAVLSGIHLG
EEECCCCCCCCCCCEEEEEEEEECCCCCEECCCCCCCCCCCHHEECCCCCHHEEEEEEEE
TLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKI
EEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCEECCCCEEEEEECCCCCCEEEEEEEEC
DNKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR
CCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2900829 [H]