Click here to switch to the map view.

The map label for this gene is ydeB [H]

Identifier: 38234538

GI number: 38234538

Start: 2021529

End: 2022110

Strand: Reverse

Name: ydeB [H]

Synonym: DIP1974

Alternate gene names: 38234538

Gene position: 2022110-2021529 (Counterclockwise)

Preceding gene: 38234539

Following gene: 38234537

Centisome position: 81.25

GC content: 56.19

Gene sequence:

>582_bases
ATGGAATTCAAGGTCGGCGATACCGTCGTTTATCCACATCACGGTGCCGCAGTAATCGAGGCAATCGAGCACCGCGAGAT
GGGCGGTGAGACCTTGGAGTATCTGGTTCTTCAGATTAACCAGTCCGACTTGGTCGTGCGCGTGCCTTCCAAGAACGCCG
AACTGGTTGGCGTTCGCGATGTTGTTGATGATGACGGCCTGCAAAAGGTTTTCGGCTTCTTGCGTGAAACCGATGTGGAA
GAGGCTGGCAACTGGTCCCGTCGCTTTAAGGCTAACCAAGAGCGTTTGGCTTCCGGCGACGTAAACAAGGTTGCCGAGGT
TGTCCGTGACCTGTGGCGTCGCGATCAGGGCAAGGGCTTGTCTGCAGGTGAAAAGCGCATGCTGGCCAAGGCACGCCAGG
TGCTCGTCGGCGAGTTGGCTCTTGCTGAGAACAAGGACGAGAAGCAGACCGAAGAGATCCTCGCTCAGGTTGATGCCACC
ATCGAGCGGCACCGCGCCGAAAACAAGGGCATTGAGGAAACTAAGGTGGAGCCACTGGGCGACATCGACCTCGATGATCT
CAATTTCGACGACGAAGACTAA

Upstream 100 bases:

>100_bases
GGTGTAACGAAACCCGCAGGCAACCCCTGTGGCCAATGCTCAAGGCGATTGGACTCACGTGGTAGAATGCCACAGTTACA
CGAATGCGCAAGGAGTTTAG

Downstream 100 bases:

>100_bases
CCCCACACCATGTCGCGCAGAGTTGTAGCCCTCGTGGCGGCAGCGGGTAAAGGCACTCGGCTGGGTGCAGATCTGCCCAA
GGCCTACGTCCCATTGCGGG

Product: putative CarD-like transcriptional factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MEFKVGDTVVYPHHGAAVIEAIEHREMGGETLEYLVLQINQSDLVVRVPSKNAELVGVRDVVDDDGLQKVFGFLRETDVE
EAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGLSAGEKRMLAKARQVLVGELALAENKDEKQTEEILAQVDAT
IERHRAENKGIEETKVEPLGDIDLDDLNFDDED

Sequences:

>Translated_193_residues
MEFKVGDTVVYPHHGAAVIEAIEHREMGGETLEYLVLQINQSDLVVRVPSKNAELVGVRDVVDDDGLQKVFGFLRETDVE
EAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGLSAGEKRMLAKARQVLVGELALAENKDEKQTEEILAQVDAT
IERHRAENKGIEETKVEPLGDIDLDDLNFDDED
>Mature_193_residues
MEFKVGDTVVYPHHGAAVIEAIEHREMGGETLEYLVLQINQSDLVVRVPSKNAELVGVRDVVDDDGLQKVFGFLRETDVE
EAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGLSAGEKRMLAKARQVLVGELALAENKDEKQTEEILAQVDAT
IERHRAENKGIEETKVEPLGDIDLDDLNFDDED

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 21679; Mature: 21679

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFKVGDTVVYPHHGAAVIEAIEHREMGGETLEYLVLQINQSDLVVRVPSKNAELVGVRD
CCCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHEEECCCCEEEECCCCCCCEEEHHH
VVDDDGLQKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGL
HHCCCCHHHHHHHHHHCCHHHHCCHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCCCCC
SAGEKRMLAKARQVLVGELALAENKDEKQTEEILAQVDATIERHRAENKGIEETKVEPLG
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCC
DIDLDDLNFDDED
CCCCCCCCCCCCC
>Mature Secondary Structure
MEFKVGDTVVYPHHGAAVIEAIEHREMGGETLEYLVLQINQSDLVVRVPSKNAELVGVRD
CCCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHEEECCCCEEEECCCCCCCEEEHHH
VVDDDGLQKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGL
HHCCCCHHHHHHHHHHCCHHHHCCHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCCCCC
SAGEKRMLAKARQVLVGELALAENKDEKQTEEILAQVDATIERHRAENKGIEETKVEPLG
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCC
DIDLDDLNFDDED
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]