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The map label for this gene is yjfH [C]

Identifier: 38234534

GI number: 38234534

Start: 2017931

End: 2018872

Strand: Reverse

Name: yjfH [C]

Synonym: DIP1970

Alternate gene names: 38234534

Gene position: 2018872-2017931 (Counterclockwise)

Preceding gene: 38234535

Following gene: 38234533

Centisome position: 81.12

GC content: 60.4

Gene sequence:

>942_bases
ATGGCTGGTAATCACACCAACCGCCCAGGTTTGCGCAAAACCAACAAAAAGGGCGCAACTAAAGGCTCCGGCGCAGTACG
CCGCCGCGGACTCAAAGGCAAAGGCCCAACCCCTAAAGCCGAAGACCGCGAGTACCACGCAGCATACAAAAAGAAGATGG
AACGCAAGCGTCGCGACCAAGGCCGCCACGTGAAGGAAGAAACCTCCGAGCTGGTTGTGGGCCGCAACCCCGTCGTCGAA
TGCCTACACGCCAAGGTGCCAGCAACCACGCTCTACATCGTAGAAGGCACCAAAAACGACAACCGCCTCAGCGAAGCCGT
CCAGATCGCTCACTCCCGTGGCATCCCCATGATCGAGGTACCCCGCCACGAGATGGACCTCATGACCGGCAACGGCATGC
ACCAAGGAATCGGCCTACAAATTCCGCCATACAAGTACACCACCGTGTTTGACCTCATCGGTCGTATTAACTCCACCGGC
GAAGACGGCATGGTCGTAGTACTCGATAACATCACCGACCCCCGCAACCTCGGCGCTGTTATCCGCTCTGTTGCCGCATT
TGGCGGCCACGGCGTGGTTATCCCAGAGCGTCGTTCCGCATCGGTCACAGCGGTGGCATGGCGCACCTCAGCGGGCACCG
CAGCACGCCTGCCCGTCGCTAAAGCCACCAACATCACTCGTGCCGTCCAAGAGTTCCAACAAAACGGCTACCAGGTTGTC
GGCCTCGACGCAGGCGGCGACGCCACCTTGGACAACTACGACGGCAGCGGCCCGGTCGTGATCGTGGTCGGCTCCGAGGG
CAAGGGAATCTCTCGCCTTGTGCGCGACAATTGCGATTCTCTCATGTCGATCCCGATGGCCGGTTGGGTTGAATCCCTCA
ACGCCTCCGTGGCAGCAGGCGTAGTGCTCAGCGAATTCGCCCGCCAGCGTCGCCTGAAGTAA

Upstream 100 bases:

>100_bases
CGACCGCCTCCACGCCGCAGGCATCACCGTCACCGATACACCTGATGGCCCAACATGGGCACTGAATAACTAAACGACTA
CAAGAACTGAGAGAACAACC

Downstream 100 bases:

>100_bases
CGCAACTGTATGGTGGTGCCTATGGCTTCCCGAAATACCCAGCGTCCCAGCCTTGCGGCACTTGCAGCGGAACTAGGCGT
CTCCCGCACCACCGTGTCCA

Product: SpoU rRNA methylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAGNHTNRPGLRKTNKKGATKGSGAVRRRGLKGKGPTPKAEDREYHAAYKKKMERKRRDQGRHVKEETSELVVGRNPVVE
CLHAKVPATTLYIVEGTKNDNRLSEAVQIAHSRGIPMIEVPRHEMDLMTGNGMHQGIGLQIPPYKYTTVFDLIGRINSTG
EDGMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRAVQEFQQNGYQVV
GLDAGGDATLDNYDGSGPVVIVVGSEGKGISRLVRDNCDSLMSIPMAGWVESLNASVAAGVVLSEFARQRRLK

Sequences:

>Translated_313_residues
MAGNHTNRPGLRKTNKKGATKGSGAVRRRGLKGKGPTPKAEDREYHAAYKKKMERKRRDQGRHVKEETSELVVGRNPVVE
CLHAKVPATTLYIVEGTKNDNRLSEAVQIAHSRGIPMIEVPRHEMDLMTGNGMHQGIGLQIPPYKYTTVFDLIGRINSTG
EDGMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRAVQEFQQNGYQVV
GLDAGGDATLDNYDGSGPVVIVVGSEGKGISRLVRDNCDSLMSIPMAGWVESLNASVAAGVVLSEFARQRRLK
>Mature_312_residues
AGNHTNRPGLRKTNKKGATKGSGAVRRRGLKGKGPTPKAEDREYHAAYKKKMERKRRDQGRHVKEETSELVVGRNPVVEC
LHAKVPATTLYIVEGTKNDNRLSEAVQIAHSRGIPMIEVPRHEMDLMTGNGMHQGIGLQIPPYKYTTVFDLIGRINSTGE
DGMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRAVQEFQQNGYQVVG
LDAGGDATLDNYDGSGPVVIVVGSEGKGISRLVRDNCDSLMSIPMAGWVESLNASVAAGVVLSEFARQRRLK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=262, Percent_Identity=29.3893129770992, Blast_Score=107, Evalue=2e-23,
Organism=Escherichia coli, GI1790623, Length=247, Percent_Identity=35.6275303643725, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1788935, Length=210, Percent_Identity=30.4761904761905, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790083, Length=172, Percent_Identity=29.0697674418605, Blast_Score=72, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17555908, Length=284, Percent_Identity=27.112676056338, Blast_Score=87, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6324775, Length=251, Percent_Identity=25.8964143426295, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 33739; Mature: 33608

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNHTNRPGLRKTNKKGATKGSGAVRRRGLKGKGPTPKAEDREYHAAYKKKMERKRRDQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
GRHVKEETSELVVGRNPVVECLHAKVPATTLYIVEGTKNDNRLSEAVQIAHSRGIPMIEV
CCCHHHHHHHEECCCCHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEC
PRHEMDLMTGNGMHQGIGLQIPPYKYTTVFDLIGRINSTGEDGMVVVLDNITDPRNLGAV
CCCHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
IRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRAVQEFQQNGYQVV
HHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHCCCEEE
GLDAGGDATLDNYDGSGPVVIVVGSEGKGISRLVRDNCDSLMSIPMAGWVESLNASVAAG
EEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCHHHHHHCCHHHHHHHHCHHHHHH
VVLSEFARQRRLK
HHHHHHHHHHCCC
>Mature Secondary Structure 
AGNHTNRPGLRKTNKKGATKGSGAVRRRGLKGKGPTPKAEDREYHAAYKKKMERKRRDQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
GRHVKEETSELVVGRNPVVECLHAKVPATTLYIVEGTKNDNRLSEAVQIAHSRGIPMIEV
CCCHHHHHHHEECCCCHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEC
PRHEMDLMTGNGMHQGIGLQIPPYKYTTVFDLIGRINSTGEDGMVVVLDNITDPRNLGAV
CCCHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
IRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRAVQEFQQNGYQVV
HHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHCCCEEE
GLDAGGDATLDNYDGSGPVVIVVGSEGKGISRLVRDNCDSLMSIPMAGWVESLNASVAAG
EEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCHHHHHHCCHHHHHHHHCHHHHHH
VVLSEFARQRRLK
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA