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The map label for this gene is rbsR [H]

Identifier: 38234533

GI number: 38234533

Start: 2016782

End: 2017921

Strand: Reverse

Name: rbsR [H]

Synonym: DIP1969

Alternate gene names: 38234533

Gene position: 2017921-2016782 (Counterclockwise)

Preceding gene: 38234534

Following gene: 38234526

Centisome position: 81.09

GC content: 60.7

Gene sequence:

>1140_bases
ATGGTGGTGCCTATGGCTTCCCGAAATACCCAGCGTCCCAGCCTTGCGGCACTTGCAGCGGAACTAGGCGTCTCCCGCAC
CACCGTGTCCAACGCCTACAACCATCCGCAGCAACTATCCGCCGAACTGCGCGAGCAAATCCTCGCCACGGCGGAACGCT
TGGGATACCTAGGCCCCGACCCCACAGCACGCTCCTTACGCACACGCCGAGTGGGAAGCGTCGGCGTGCTGTTTACGGAC
CATCTCACCTACGCCTTTGAGGACCTCGCCTCGGTGGACTTTTTAGCCGGAATGGCCGAGGCATCAGCGGGTTCGCAGAC
CTCCATGACGCTCGTGCCCGTAGGGCCGGATTCTCTCGACCCGACCGCGGCAAAGCAGCTGGTCAACTCTGCAGTGGTCG
ACGGATTCGTGGTCTACTCTGTAGCAAAAGGTGACCCCTTTCTAGAAGCCGTGCACGCTAGGGGACTACCCGCCGTTGTC
TGCGACCAGCCTGCCGACGATCACCGCATGTCCTTCGTCGGTATTGACGACCACACAGCCATCGCTCCCGCAGCCCAAGC
GCTTGTCGACGCCGGCCACCGTAGCATCGGTATCTTGTGCATTCGCCTCGACTCTGAGCCCAACAACGGCCCAGTGTCGT
TTGAACGCCTCAAGCACGCCCACCACCACGTGCAGCGTGCCCGAGTCCAAGGCGCACTCGAAGTATTCGACGCCGCCGGC
ATTCCCGCCGGCGCAGTACCGATCATCGAACGCCACATCAACGACCCCGCCAACAACATCGACGCTGCCCGCGAGCTATT
AACCGCACACCCCGACGTGACCGCAATCTTATGCACCACCGACACCATGGCCTTTGGTGTGCTGGAATATGCCAAAGAAC
TCGGGTTGCGTGTGCCAGAAGACCTCTCCGTAACCGGCTTTGACGGGATCGCTCCCGCCCTCAACCGCGAACTGACCACG
GTGCTCCAGCCAAACAAAATCAAAGGTGAACGCGCTGGTACCTTGCTCTATTCGATGATCGAAGAAGCACAAAAGAACCC
TAACGTGATCTCCCGTGGCCAACTACACCGCGAGATCCTAGCAACGTCCTTCCACCCAGGAGCTACTGTTGTGCCGCCGA
ACGAGCATCGGCGAGGCTAG

Upstream 100 bases:

>100_bases
CCCGATGGCCGGTTGGGTTGAATCCCTCAACGCCTCCGTGGCAGCAGGCGTAGTGCTCAGCGAATTCGCCCGCCAGCGTC
GCCTGAAGTAACGCAACTGT

Downstream 100 bases:

>100_bases
ACAAAAACTGCCCCACGCGGTCAATGGACTCAAGGCGTACCGTGGCGCAGGTATCACCAGCACCCACCTTGATGCCTACG
TCGTTGCAGCCTAACACCGC

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MVVPMASRNTQRPSLAALAAELGVSRTTVSNAYNHPQQLSAELREQILATAERLGYLGPDPTARSLRTRRVGSVGVLFTD
HLTYAFEDLASVDFLAGMAEASAGSQTSMTLVPVGPDSLDPTAAKQLVNSAVVDGFVVYSVAKGDPFLEAVHARGLPAVV
CDQPADDHRMSFVGIDDHTAIAPAAQALVDAGHRSIGILCIRLDSEPNNGPVSFERLKHAHHHVQRARVQGALEVFDAAG
IPAGAVPIIERHINDPANNIDAARELLTAHPDVTAILCTTDTMAFGVLEYAKELGLRVPEDLSVTGFDGIAPALNRELTT
VLQPNKIKGERAGTLLYSMIEEAQKNPNVISRGQLHREILATSFHPGATVVPPNEHRRG

Sequences:

>Translated_379_residues
MVVPMASRNTQRPSLAALAAELGVSRTTVSNAYNHPQQLSAELREQILATAERLGYLGPDPTARSLRTRRVGSVGVLFTD
HLTYAFEDLASVDFLAGMAEASAGSQTSMTLVPVGPDSLDPTAAKQLVNSAVVDGFVVYSVAKGDPFLEAVHARGLPAVV
CDQPADDHRMSFVGIDDHTAIAPAAQALVDAGHRSIGILCIRLDSEPNNGPVSFERLKHAHHHVQRARVQGALEVFDAAG
IPAGAVPIIERHINDPANNIDAARELLTAHPDVTAILCTTDTMAFGVLEYAKELGLRVPEDLSVTGFDGIAPALNRELTT
VLQPNKIKGERAGTLLYSMIEEAQKNPNVISRGQLHREILATSFHPGATVVPPNEHRRG
>Mature_379_residues
MVVPMASRNTQRPSLAALAAELGVSRTTVSNAYNHPQQLSAELREQILATAERLGYLGPDPTARSLRTRRVGSVGVLFTD
HLTYAFEDLASVDFLAGMAEASAGSQTSMTLVPVGPDSLDPTAAKQLVNSAVVDGFVVYSVAKGDPFLEAVHARGLPAVV
CDQPADDHRMSFVGIDDHTAIAPAAQALVDAGHRSIGILCIRLDSEPNNGPVSFERLKHAHHHVQRARVQGALEVFDAAG
IPAGAVPIIERHINDPANNIDAARELLTAHPDVTAILCTTDTMAFGVLEYAKELGLRVPEDLSVTGFDGIAPALNRELTT
VLQPNKIKGERAGTLLYSMIEEAQKNPNVISRGQLHREILATSFHPGATVVPPNEHRRG

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=342, Percent_Identity=26.3157894736842, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1790369, Length=348, Percent_Identity=26.7241379310345, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI48994940, Length=351, Percent_Identity=24.2165242165242, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790194, Length=343, Percent_Identity=25.0728862973761, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 40454; Mature: 40454

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVPMASRNTQRPSLAALAAELGVSRTTVSNAYNHPQQLSAELREQILATAERLGYLGPD
CCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
PTARSLRTRRVGSVGVLFTDHLTYAFEDLASVDFLAGMAEASAGSQTSMTLVPVGPDSLD
CHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
PTAAKQLVNSAVVDGFVVYSVAKGDPFLEAVHARGLPAVVCDQPADDHRMSFVGIDDHTA
HHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCH
IAPAAQALVDAGHRSIGILCIRLDSEPNNGPVSFERLKHAHHHVQRARVQGALEVFDAAG
HHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPAGAVPIIERHINDPANNIDAARELLTAHPDVTAILCTTDTMAFGVLEYAKELGLRVPE
CCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCC
DLSVTGFDGIAPALNRELTTVLQPNKIKGERAGTLLYSMIEEAQKNPNVISRGQLHREIL
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ATSFHPGATVVPPNEHRRG
HHCCCCCCEECCCCCCCCC
>Mature Secondary Structure
MVVPMASRNTQRPSLAALAAELGVSRTTVSNAYNHPQQLSAELREQILATAERLGYLGPD
CCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
PTARSLRTRRVGSVGVLFTDHLTYAFEDLASVDFLAGMAEASAGSQTSMTLVPVGPDSLD
CHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
PTAAKQLVNSAVVDGFVVYSVAKGDPFLEAVHARGLPAVVCDQPADDHRMSFVGIDDHTA
HHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCH
IAPAAQALVDAGHRSIGILCIRLDSEPNNGPVSFERLKHAHHHVQRARVQGALEVFDAAG
HHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPAGAVPIIERHINDPANNIDAARELLTAHPDVTAILCTTDTMAFGVLEYAKELGLRVPE
CCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCC
DLSVTGFDGIAPALNRELTTVLQPNKIKGERAGTLLYSMIEEAQKNPNVISRGQLHREIL
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ATSFHPGATVVPPNEHRRG
HHCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]