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The map label for this gene is yfdZ [C]

Identifier: 38234496

GI number: 38234496

Start: 1983773

End: 1984909

Strand: Reverse

Name: yfdZ [C]

Synonym: DIP1929

Alternate gene names: 38234496

Gene position: 1984909-1983773 (Counterclockwise)

Preceding gene: 38234497

Following gene: 38234495

Centisome position: 79.76

GC content: 57.08

Gene sequence:

>1137_bases
ATGTTTCCGAGTGATCGTAGCCACGTTGACCCGTTTCGAGTGATGCAGATTTTGGGGGAGGCGCAGTCGCGTGACGATGC
TCTGCTGTTGTGCGTGGGGCAGCCGTCGACGGGCGCGCCGCGGGCGGTAATTGAGCGCGTCCATTCGCGTATCGACGCCT
CTGCGCTCGGTTACACTGCCACCTTGGGGATCCCTGAGCTTCGTGAGGCGATTGCTCAGTGGCATGCTCAGAAGTATGGC
ATTGATACGGCTGCTCGCAATGTGGTGGTGACCACTGGATCATCTGGCGGGTTTGTTGCCTTGTTCTTGGCGGCCCTAGA
CCATGGTGATCCGATTGCTATGACACGCCCTGGTTATCCGGCGTATCGCAATGCATTGACGGCTCTAGGCGCAAAGATTA
TCGATCTGCCCTGTGGCGCAGAAACTCGCTTCCAGCCCACGGTTGAGATGCTCGAGGCGTGCGTCGAAAAGCCGAAAGCG
CTGATTGTGACCAGCCCTGATAATCCTTCGGGGACGATCATTGATGGTGCTGAGCTAGCGCGCATTACTGATTGGTGTGA
GCGCAACTCCTGCCTGCTGATCTCCGACGAGATCTACCACGGCATCACCTATGGGCGTGAGTGCCACAGCGCACGGGAGT
ACTCCGATAAAGCAGTGGTGGTGGGCTCGCTGTCGAAGTACTTTTCTATGACCGGCTGGCGGCTAGGCTGGCTCATTGTT
CCTGATGAGCTGGTAGAAGCCCTTGATAATTTGCAAGCTAATCTTGCCCTGTGCCCGCCGGCGGTGTCTCAAGAAGCAGC
ACTGGCTGCTTTCGGCCCTGAGGCGCGCGCCGAGTTGGAAAGCCATGTTCAGCGCTATGCCCGTAATCGTGCGTTGCTTC
TTAAACGGCTTCCTGAGTTGGGGCTGGGCAAGTGTGCGCCGCCGGACGGTGGCTTCTACCTTTACATTGATGTATCGGAG
CACACCGATGATTCGGAGGTCTGGGTGCGTGAACTGCTCAACGCCACCGGTGTAGCACTTGCTCCTGGTGTGGACTTCGA
CCCCGTTGACGGACATCGTTTTGTTCGGCTGAGTTTCTGCGGAGAATATGAGGAAATTCTTCAAGCATGTGAGCGTTTGC
GCACGTTCATGCCATAA

Upstream 100 bases:

>100_bases
TCGAAGCCGGAGATGGTGTTGCGGTCGGGGGATTTGATTTTGGCTGCGGGTAACCCCGATGAGCTGGAGAGGTTTGGCAC
TTTGGACTAGCGTGTCTGCT

Downstream 100 bases:

>100_bases
TGAGCTACGTGGCTGAGAAGAAGAAGATCGCAAACGTCCTGTCCAACCGCTACGCCTCTGCTGAGCTCACCGAACTGTGG
AGCCCAGAGGCAAAGATCCT

Product: putative aspartate aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MFPSDRSHVDPFRVMQILGEAQSRDDALLLCVGQPSTGAPRAVIERVHSRIDASALGYTATLGIPELREAIAQWHAQKYG
IDTAARNVVVTTGSSGGFVALFLAALDHGDPIAMTRPGYPAYRNALTALGAKIIDLPCGAETRFQPTVEMLEACVEKPKA
LIVTSPDNPSGTIIDGAELARITDWCERNSCLLISDEIYHGITYGRECHSAREYSDKAVVVGSLSKYFSMTGWRLGWLIV
PDELVEALDNLQANLALCPPAVSQEAALAAFGPEARAELESHVQRYARNRALLLKRLPELGLGKCAPPDGGFYLYIDVSE
HTDDSEVWVRELLNATGVALAPGVDFDPVDGHRFVRLSFCGEYEEILQACERLRTFMP

Sequences:

>Translated_378_residues
MFPSDRSHVDPFRVMQILGEAQSRDDALLLCVGQPSTGAPRAVIERVHSRIDASALGYTATLGIPELREAIAQWHAQKYG
IDTAARNVVVTTGSSGGFVALFLAALDHGDPIAMTRPGYPAYRNALTALGAKIIDLPCGAETRFQPTVEMLEACVEKPKA
LIVTSPDNPSGTIIDGAELARITDWCERNSCLLISDEIYHGITYGRECHSAREYSDKAVVVGSLSKYFSMTGWRLGWLIV
PDELVEALDNLQANLALCPPAVSQEAALAAFGPEARAELESHVQRYARNRALLLKRLPELGLGKCAPPDGGFYLYIDVSE
HTDDSEVWVRELLNATGVALAPGVDFDPVDGHRFVRLSFCGEYEEILQACERLRTFMP
>Mature_378_residues
MFPSDRSHVDPFRVMQILGEAQSRDDALLLCVGQPSTGAPRAVIERVHSRIDASALGYTATLGIPELREAIAQWHAQKYG
IDTAARNVVVTTGSSGGFVALFLAALDHGDPIAMTRPGYPAYRNALTALGAKIIDLPCGAETRFQPTVEMLEACVEKPKA
LIVTSPDNPSGTIIDGAELARITDWCERNSCLLISDEIYHGITYGRECHSAREYSDKAVVVGSLSKYFSMTGWRLGWLIV
PDELVEALDNLQANLALCPPAVSQEAALAAFGPEARAELESHVQRYARNRALLLKRLPELGLGKCAPPDGGFYLYIDVSE
HTDDSEVWVRELLNATGVALAPGVDFDPVDGHRFVRLSFCGEYEEILQACERLRTFMP

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=395, Percent_Identity=24.5569620253165, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI169881279, Length=395, Percent_Identity=24.5569620253165, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI56713256, Length=311, Percent_Identity=28.9389067524116, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI56713254, Length=311, Percent_Identity=28.9389067524116, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI169881281, Length=307, Percent_Identity=24.1042345276873, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4507369, Length=343, Percent_Identity=25.6559766763848, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI215599424, Length=392, Percent_Identity=22.4489795918367, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI19263340, Length=381, Percent_Identity=22.3097112860892, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1788722, Length=365, Percent_Identity=27.9452054794521, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1786816, Length=376, Percent_Identity=28.7234042553192, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788627, Length=372, Percent_Identity=25.8064516129032, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1790797, Length=358, Percent_Identity=25.4189944134078, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI48994949, Length=342, Percent_Identity=24.8538011695906, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787710, Length=356, Percent_Identity=23.5955056179775, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71994476, Length=388, Percent_Identity=25, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71994472, Length=388, Percent_Identity=25, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17567369, Length=404, Percent_Identity=24.7524752475248, Blast_Score=101, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17567663, Length=366, Percent_Identity=25.1366120218579, Blast_Score=88, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6322401, Length=384, Percent_Identity=24.4791666666667, Blast_Score=113, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6320317, Length=363, Percent_Identity=24.2424242424242, Blast_Score=80, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6323118, Length=359, Percent_Identity=24.2339832869081, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI18859735, Length=367, Percent_Identity=26.7029972752044, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28573069, Length=392, Percent_Identity=23.7244897959184, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24646114, Length=392, Percent_Identity=23.7244897959184, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI28573067, Length=392, Percent_Identity=23.7244897959184, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI28573065, Length=392, Percent_Identity=23.7244897959184, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24641770, Length=364, Percent_Identity=23.3516483516484, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641760, Length=364, Percent_Identity=23.3516483516484, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641768, Length=364, Percent_Identity=23.3516483516484, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641766, Length=364, Percent_Identity=23.3516483516484, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641764, Length=364, Percent_Identity=23.3516483516484, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45551451, Length=364, Percent_Identity=23.3516483516484, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 41258; Mature: 41258

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPSDRSHVDPFRVMQILGEAQSRDDALLLCVGQPSTGAPRAVIERVHSRIDASALGYTA
CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCHHHCCEEE
TLGIPELREAIAQWHAQKYGIDTAARNVVVTTGSSGGFVALFLAALDHGDPIAMTRPGYP
ECCCHHHHHHHHHHHHHHHCCCHHHCEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCH
AYRNALTALGAKIIDLPCGAETRFQPTVEMLEACVEKPKALIVTSPDNPSGTIIDGAELA
HHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEECCHHHH
RITDWCERNSCLLISDEIYHGITYGRECHSAREYSDKAVVVGSLSKYFSMTGWRLGWLIV
HHHHHHCCCCEEEEEHHHHHHHHHCHHHHHHHHCCCCEEEEECHHHHHHCCCCEEEEEEC
PDELVEALDNLQANLALCPPAVSQEAALAAFGPEARAELESHVQRYARNRALLLKRLPEL
CHHHHHHHHCCCCCEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
GLGKCAPPDGGFYLYIDVSEHTDDSEVWVRELLNATGVALAPGVDFDPVDGHRFVRLSFC
CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEEC
GEYEEILQACERLRTFMP
CCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFPSDRSHVDPFRVMQILGEAQSRDDALLLCVGQPSTGAPRAVIERVHSRIDASALGYTA
CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCHHHCCEEE
TLGIPELREAIAQWHAQKYGIDTAARNVVVTTGSSGGFVALFLAALDHGDPIAMTRPGYP
ECCCHHHHHHHHHHHHHHHCCCHHHCEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCH
AYRNALTALGAKIIDLPCGAETRFQPTVEMLEACVEKPKALIVTSPDNPSGTIIDGAELA
HHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEECCHHHH
RITDWCERNSCLLISDEIYHGITYGRECHSAREYSDKAVVVGSLSKYFSMTGWRLGWLIV
HHHHHHCCCCEEEEEHHHHHHHHHCHHHHHHHHCCCCEEEEECHHHHHHCCCCEEEEEEC
PDELVEALDNLQANLALCPPAVSQEAALAAFGPEARAELESHVQRYARNRALLLKRLPEL
CHHHHHHHHCCCCCEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
GLGKCAPPDGGFYLYIDVSEHTDDSEVWVRELLNATGVALAPGVDFDPVDGHRFVRLSFC
CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEEC
GEYEEILQACERLRTFMP
CCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]