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The map label for this gene is nrdF [H]

Identifier: 38234491

GI number: 38234491

Start: 1975739

End: 1976764

Strand: Direct

Name: nrdF [H]

Synonym: DIP1924

Alternate gene names: 38234491

Gene position: 1975739-1976764 (Clockwise)

Preceding gene: 38234490

Following gene: 38234500

Centisome position: 79.39

GC content: 54.97

Gene sequence:

>1026_bases
ATGAGCTACGTTGATAACTCCATTACCCCACCGCAATGGCCGCACAACCCCACCACCCCACTGCGACCCATCAACTGGAA
TCGAACCCAAGACGCAAAAGACAATGAAGTCTGGCAACGTCTCACCGCTAATTTCTGGCTCCCCGAAAAAGTCCCACTTT
CAAACGACCTCCCCACTTGGCGCACCATGACGCCCGTCTACCGCGAACTCGTCACCCGCACCTTTACCGGACTCACACTT
CTTGACACCCTCCAAGCAAGCGTCGGCGAAATCAGCCAAATTCCCGACGCCCACACCGAGCACGAACAAGCCGTCTACGC
CAACATTGCCTTCATGCAGGCAGTTCACGCTCGCAGCTACTCCTCAGTGTTTAGTACCATGTGCTCCAGCACTGAGATCG
ACGATGCCTACACTTGGGCCATATCCAACCCCCTCCTACAGCGCCGCGCTACCCGCGTCATCGAGCACTACTACGGAAGC
GATCCCCTCAAACGCAAAGTAGCCTCCACGCTTTTATCTTCCCTCCTCCTCTACGCTGGTTTCTACCTGCCATTATGGCT
ATCGACCCGCGGAAAACTCATGAACACAGCCGACATGATCCGCCTCATCCTGCGCGACAAAGCAGTCCACGGATACTACT
CTGGATACAAATACCAACGCGGGCTTGAGCTCAAACCCGAACGAGCCAACGAAATGGCAGAGTTCACCTACTCGCTTTGC
GACGAACTCCTCGACATGGAAAAGGCCTACACCGCCGACCTCTACGCCCCAGCCGACCAAGCCAATGCCCTAGAAGGCCT
CACCCTCGACGGCGTGATGTCTTTTGTGTACTACAACGCAGATAAGGCTCTCATGAACCTAGGCTACGAACCTGCCTACG
AGGAACAAGCAGCACACGTAAGCCCCGAAATTATTGCAGCCTTAACCCCAGAATCCAATGAAACCCATGACTTCTTTTCC
GGATCAGGCTCCGCCTACATCATCGGAACCGCGGAAGAAACCACCGAAGAGGACTGGGACTTTTAG

Upstream 100 bases:

>100_bases
ACGTGCCCGAACTTCATCGTTTTGAGCTACTCGGCACCAACGCCGACGCCCACCACGTCCACGACGCAGTCATCGATATT
CTTCAAGAAAGGACCACCAA

Downstream 100 bases:

>100_bases
CAGGTCAGAGCACATATAAGTACCCTCAAGCATATTGCCAGCAAACTCCAACACTGCCACATCAACCCCACTATTCACTG
TCATATGACGAACGAAGATG

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSYVDNSITPPQWPHNPTTPLRPINWNRTQDAKDNEVWQRLTANFWLPEKVPLSNDLPTWRTMTPVYRELVTRTFTGLTL
LDTLQASVGEISQIPDAHTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSTEIDDAYTWAISNPLLQRRATRVIEHYYGS
DPLKRKVASTLLSSLLLYAGFYLPLWLSTRGKLMNTADMIRLILRDKAVHGYYSGYKYQRGLELKPERANEMAEFTYSLC
DELLDMEKAYTADLYAPADQANALEGLTLDGVMSFVYYNADKALMNLGYEPAYEEQAAHVSPEIIAALTPESNETHDFFS
GSGSAYIIGTAEETTEEDWDF

Sequences:

>Translated_341_residues
MSYVDNSITPPQWPHNPTTPLRPINWNRTQDAKDNEVWQRLTANFWLPEKVPLSNDLPTWRTMTPVYRELVTRTFTGLTL
LDTLQASVGEISQIPDAHTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSTEIDDAYTWAISNPLLQRRATRVIEHYYGS
DPLKRKVASTLLSSLLLYAGFYLPLWLSTRGKLMNTADMIRLILRDKAVHGYYSGYKYQRGLELKPERANEMAEFTYSLC
DELLDMEKAYTADLYAPADQANALEGLTLDGVMSFVYYNADKALMNLGYEPAYEEQAAHVSPEIIAALTPESNETHDFFS
GSGSAYIIGTAEETTEEDWDF
>Mature_340_residues
SYVDNSITPPQWPHNPTTPLRPINWNRTQDAKDNEVWQRLTANFWLPEKVPLSNDLPTWRTMTPVYRELVTRTFTGLTLL
DTLQASVGEISQIPDAHTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSTEIDDAYTWAISNPLLQRRATRVIEHYYGSD
PLKRKVASTLLSSLLLYAGFYLPLWLSTRGKLMNTADMIRLILRDKAVHGYYSGYKYQRGLELKPERANEMAEFTYSLCD
ELLDMEKAYTADLYAPADQANALEGLTLDGVMSFVYYNADKALMNLGYEPAYEEQAAHVSPEIIAALTPESNETHDFFSG
SGSAYIIGTAEETTEEDWDF

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=322, Percent_Identity=56.2111801242236, Blast_Score=381, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 38697; Mature: 38565

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYVDNSITPPQWPHNPTTPLRPINWNRTQDAKDNEVWQRLTANFWLPEKVPLSNDLPTW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
RTMTPVYRELVTRTFTGLTLLDTLQASVGEISQIPDAHTEHEQAVYANIAFMQAVHARSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
SSVFSTMCSSTEIDDAYTWAISNPLLQRRATRVIEHYYGSDPLKRKVASTLLSSLLLYAG
HHHHHHHHCCCCCCCCEEEHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FYLPLWLSTRGKLMNTADMIRLILRDKAVHGYYSGYKYQRGLELKPERANEMAEFTYSLC
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
DELLDMEKAYTADLYAPADQANALEGLTLDGVMSFVYYNADKALMNLGYEPAYEEQAAHV
HHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHCC
SPEIIAALTPESNETHDFFSGSGSAYIIGTAEETTEEDWDF
CCHHEEEECCCCCCCCHHHCCCCCEEEEECCHHCCCCCCCC
>Mature Secondary Structure 
SYVDNSITPPQWPHNPTTPLRPINWNRTQDAKDNEVWQRLTANFWLPEKVPLSNDLPTW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
RTMTPVYRELVTRTFTGLTLLDTLQASVGEISQIPDAHTEHEQAVYANIAFMQAVHARSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
SSVFSTMCSSTEIDDAYTWAISNPLLQRRATRVIEHYYGSDPLKRKVASTLLSSLLLYAG
HHHHHHHHCCCCCCCCEEEHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FYLPLWLSTRGKLMNTADMIRLILRDKAVHGYYSGYKYQRGLELKPERANEMAEFTYSLC
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
DELLDMEKAYTADLYAPADQANALEGLTLDGVMSFVYYNADKALMNLGYEPAYEEQAAHV
HHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHCC
SPEIIAALTPESNETHDFFSGSGSAYIIGTAEETTEEDWDF
CCHHEEEECCCCCCCCHHHCCCCCEEEEECCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]