Click here to switch to the map view.

The map label for this gene is yqfA [C]

Identifier: 38234489

GI number: 38234489

Start: 1974391

End: 1975179

Strand: Reverse

Name: yqfA [C]

Synonym: DIP1922

Alternate gene names: 38234489

Gene position: 1975179-1974391 (Counterclockwise)

Preceding gene: 38234492

Following gene: 38234488

Centisome position: 79.37

GC content: 60.46

Gene sequence:

>789_bases
ATGCTTGGGCATGGCGCGGAAACCTACGCAGTGGTAGGTTTTGGGTTCAAATACATTCACCATCTCAACGCCACGAGAGG
AATGCCCATGACCACAACGCCACCATCCCCCATGGTCGAATACCGCCGATGGATCTACGACCGCGGCCCCCGCCCCATCA
CCCGCGGCTGGTTCCACCTCGTGGCCTCGTGGTGCGCACTCGTCTCCGGCTCCGTGCTCTCCACCTACGCCTTCATCTAC
CGCCCCTGGCCACAAGCACTCGGAGTTCTCACCTACGCCATCGGTGTAGTCGCCCTCTTCGGAGTCTCCGCAGCCTACCA
CCGCGGCCGCTGGAAAACCCCCGAAGCAGTCGCATGGTGGCGCCGCGCCGACCACGCCACCATCGGAGTATTTATCGCCT
CGACCTACACCCCCTTATGCCTGATTGCCCTGCCACAATCACTCTGGGTGCTCTACCTCGCATGGGCAGGAGCCGCAGGC
GCACTCATCCTCAGCATGGTGTGGATCACTCACCCGCGCTGGCTAGCCGCAAGCATATATATTGCGCTGGGATGGCTCAT
CACCCCACTGATCCCCGCACTATGGCGGGCTGAAGGGGCAGCCGTTGTGTGGCTGCTTTTTATAGGCGGAATCGTCTACT
CCGCAGGCGCTATCGTGTACGCCATGCGCTGGCCAGGTAGAAACGCCACCATCATGGGCTACCATGAGATTTTTCACGCC
GCCACAATCGTGGCAGCAATTATTCACCTCGTAGCCGTATGGATGGTGGTCGTCCCCAATGCTTCATAG

Upstream 100 bases:

>100_bases
GGCGGTAGTTCACCACATCACCAAAAGTTCAATGCATTGAACTTTTGGTGATGTTCGCAATGTACGCCACGGCGACTGTA
AAAGAAAACCGCATACATTA

Downstream 100 bases:

>100_bases
TCTTAGTCAATGCGCTGCGTAGTCTTTTGCGCAATCAATGGCATAGGGGAGTGCTGTGCTCGCAGCTCACGCAGCACCAG
CCTCATCGACGCATTGGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MLGHGAETYAVVGFGFKYIHHLNATRGMPMTTTPPSPMVEYRRWIYDRGPRPITRGWFHLVASWCALVSGSVLSTYAFIY
RPWPQALGVLTYAIGVVALFGVSAAYHRGRWKTPEAVAWWRRADHATIGVFIASTYTPLCLIALPQSLWVLYLAWAGAAG
ALILSMVWITHPRWLAASIYIALGWLITPLIPALWRAEGAAVVWLLFIGGIVYSAGAIVYAMRWPGRNATIMGYHEIFHA
ATIVAAIIHLVAVWMVVVPNAS

Sequences:

>Translated_262_residues
MLGHGAETYAVVGFGFKYIHHLNATRGMPMTTTPPSPMVEYRRWIYDRGPRPITRGWFHLVASWCALVSGSVLSTYAFIY
RPWPQALGVLTYAIGVVALFGVSAAYHRGRWKTPEAVAWWRRADHATIGVFIASTYTPLCLIALPQSLWVLYLAWAGAAG
ALILSMVWITHPRWLAASIYIALGWLITPLIPALWRAEGAAVVWLLFIGGIVYSAGAIVYAMRWPGRNATIMGYHEIFHA
ATIVAAIIHLVAVWMVVVPNAS
>Mature_262_residues
MLGHGAETYAVVGFGFKYIHHLNATRGMPMTTTPPSPMVEYRRWIYDRGPRPITRGWFHLVASWCALVSGSVLSTYAFIY
RPWPQALGVLTYAIGVVALFGVSAAYHRGRWKTPEAVAWWRRADHATIGVFIASTYTPLCLIALPQSLWVLYLAWAGAAG
ALILSMVWITHPRWLAASIYIALGWLITPLIPALWRAEGAAVVWLLFIGGIVYSAGAIVYAMRWPGRNATIMGYHEIFHA
ATIVAAIIHLVAVWMVVVPNAS

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 28988; Mature: 28988

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGHGAETYAVVGFGFKYIHHLNATRGMPMTTTPPSPMVEYRRWIYDRGPRPITRGWFHL
CCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
VASWCALVSGSVLSTYAFIYRPWPQALGVLTYAIGVVALFGVSAAYHRGRWKTPEAVAWW
HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RRADHATIGVFIASTYTPLCLIALPQSLWVLYLAWAGAAGALILSMVWITHPRWLAASIY
HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHH
IALGWLITPLIPALWRAEGAAVVWLLFIGGIVYSAGAIVYAMRWPGRNATIMGYHEIFHA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHH
ATIVAAIIHLVAVWMVVVPNAS
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLGHGAETYAVVGFGFKYIHHLNATRGMPMTTTPPSPMVEYRRWIYDRGPRPITRGWFHL
CCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
VASWCALVSGSVLSTYAFIYRPWPQALGVLTYAIGVVALFGVSAAYHRGRWKTPEAVAWW
HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RRADHATIGVFIASTYTPLCLIALPQSLWVLYLAWAGAAGALILSMVWITHPRWLAASIY
HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHH
IALGWLITPLIPALWRAEGAAVVWLLFIGGIVYSAGAIVYAMRWPGRNATIMGYHEIFHA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHH
ATIVAAIIHLVAVWMVVVPNAS
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]