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The map label for this gene is dapF [H]

Identifier: 38234023

GI number: 38234023

Start: 1461458

End: 1462351

Strand: Reverse

Name: dapF [H]

Synonym: DIP1442

Alternate gene names: 38234023

Gene position: 1462351-1461458 (Counterclockwise)

Preceding gene: 38234024

Following gene: 38234020

Centisome position: 58.76

GC content: 48.88

Gene sequence:

>894_bases
ATGACCTACATGAATACTCACGATGCACAGTTGCCCGTCTATAAAGGGCACGGCACGGAAAATGATTTCGTTATCATCCC
GGACTTAGATGCGAAAATTGAGCTCACACCAGATTTCATTGCCGCACTATGTGATCGCCGAAGCGGAATTGGTGGCGATG
GACTTCTCCGCGTAGCAACAGCTCAAGCGCTTCTGAAATCAGGAGTTCTCGCTGCCCTTCCAGACGGAGTAGCTGCGACT
GACGTGTTTATGGACTATTACAATGCAGATGGATCAACTGCTCAAATGTGTGGCAATGGAACGCGAGTTTTTGCCCATTG
GGTACGAGCTCATGGAATTAAAGACGAAGACGAGTTTGTTGTAGGTACCCGCGCCGGGGCACGTTTTGTCAAAGTACGTA
GCTTTGATGATTCACAGGCTGAAGTTACGGTTGATATGGGCTCAGCGGAAGTCACAGGTGTATCTACATGCACAATCGGG
TCACAACAATTCGCTGGCTTAGGCGTTGATATGGGTAACCCACATTTGGCATGTGTTGTTCCTGGGTATGGTCAAGAAGA
CATTGAAAATCTTGATTTAGTCAAACCGTTATTTGACCCGAAGTTTTTCCCAGAAGGTGTAAATGTTGAAATCGCTACGC
CCTTAGTTCAAGGTGTTACACATATGCGTGTCTTTGAACGAGGGGTTGGAGAAACGCGAAGTTGCGGAACTGGCACTGTG
GCTACGGCTCGGGCGGCATTAGCTGATGCTGGACATGCCGATGGGGAAGTGGTTGTAGTCGTTCCAGGCGGAAAAGTCAG
GGTGACTATTCAGGGGGATGAATCAACTTTGACTGGCCCGTCACGAATCGTCGCCTCGGGGTATATCAATCTGGCCGGAC
TGAAGAAAAACTAA

Upstream 100 bases:

>100_bases
GCTACGTGCGTAGGCAACGAAGCTGGTTCAAACGCGATCCAAGAATTCATTGGATCGATGCGAGCGGAGATACTTTCTCT
ATGGCGTTATCATTGCTGTC

Downstream 100 bases:

>100_bases
TCTAAAAGCTAGTTTTCGGTGTACCGACGTGCGGCTCGGCGTGCGTCGATCCATGCTTGTTGGAGTTGAGATGCTCTCTG
GTCGGTTATGTCGAGAAGCT

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTYMNTHDAQLPVYKGHGTENDFVIIPDLDAKIELTPDFIAALCDRRSGIGGDGLLRVATAQALLKSGVLAALPDGVAAT
DVFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFVVGTRAGARFVKVRSFDDSQAEVTVDMGSAEVTGVSTCTIG
SQQFAGLGVDMGNPHLACVVPGYGQEDIENLDLVKPLFDPKFFPEGVNVEIATPLVQGVTHMRVFERGVGETRSCGTGTV
ATARAALADAGHADGEVVVVVPGGKVRVTIQGDESTLTGPSRIVASGYINLAGLKKN

Sequences:

>Translated_297_residues
MTYMNTHDAQLPVYKGHGTENDFVIIPDLDAKIELTPDFIAALCDRRSGIGGDGLLRVATAQALLKSGVLAALPDGVAAT
DVFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFVVGTRAGARFVKVRSFDDSQAEVTVDMGSAEVTGVSTCTIG
SQQFAGLGVDMGNPHLACVVPGYGQEDIENLDLVKPLFDPKFFPEGVNVEIATPLVQGVTHMRVFERGVGETRSCGTGTV
ATARAALADAGHADGEVVVVVPGGKVRVTIQGDESTLTGPSRIVASGYINLAGLKKN
>Mature_296_residues
TYMNTHDAQLPVYKGHGTENDFVIIPDLDAKIELTPDFIAALCDRRSGIGGDGLLRVATAQALLKSGVLAALPDGVAATD
VFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFVVGTRAGARFVKVRSFDDSQAEVTVDMGSAEVTGVSTCTIGS
QQFAGLGVDMGNPHLACVVPGYGQEDIENLDLVKPLFDPKFFPEGVNVEIATPLVQGVTHMRVFERGVGETRSCGTGTVA
TARAALADAGHADGEVVVVVPGGKVRVTIQGDESTLTGPSRIVASGYINLAGLKKN

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=299, Percent_Identity=30.7692307692308, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 31230; Mature: 31098

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYMNTHDAQLPVYKGHGTENDFVIIPDLDAKIELTPDFIAALCDRRSGIGGDGLLRVAT
CCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHH
AQALLKSGVLAALPDGVAATDVFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFV
HHHHHHCCCEEECCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCEE
VGTRAGARFVKVRSFDDSQAEVTVDMGSAEVTGVSTCTIGSQQFAGLGVDMGNPHLACVV
EEECCCCEEEEEECCCCCCEEEEEECCCCEECCEEEEEECCHHHCEECCCCCCCEEEEEE
PGYGQEDIENLDLVKPLFDPKFFPEGVNVEIATPLVQGVTHMRVFERGVGETRSCGTGTV
CCCCHHHHCCCHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCH
ATARAALADAGHADGEVVVVVPGGKVRVTIQGDESTLTGPSRIVASGYINLAGLKKN
HHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCHHEEEECCEEEEEECCC
>Mature Secondary Structure 
TYMNTHDAQLPVYKGHGTENDFVIIPDLDAKIELTPDFIAALCDRRSGIGGDGLLRVAT
CCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHH
AQALLKSGVLAALPDGVAATDVFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFV
HHHHHHCCCEEECCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCEE
VGTRAGARFVKVRSFDDSQAEVTVDMGSAEVTGVSTCTIGSQQFAGLGVDMGNPHLACVV
EEECCCCEEEEEECCCCCCEEEEEECCCCEECCEEEEEECCHHHCEECCCCCCCEEEEEE
PGYGQEDIENLDLVKPLFDPKFFPEGVNVEIATPLVQGVTHMRVFERGVGETRSCGTGTV
CCCCHHHHCCCHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCH
ATARAALADAGHADGEVVVVVPGGKVRVTIQGDESTLTGPSRIVASGYINLAGLKKN
HHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCHHEEEECCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA