| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
Click here to switch to the map view.
The map label for this gene is pgl [H]
Identifier: 38233892
GI number: 38233892
Start: 1317678
End: 1318394
Strand: Direct
Name: pgl [H]
Synonym: DIP1306
Alternate gene names: 38233892
Gene position: 1317678-1318394 (Clockwise)
Preceding gene: 38233891
Following gene: 38233922
Centisome position: 52.95
GC content: 48.81
Gene sequence:
>717_bases ATGGTTGAAGTTATTCGAGTATCAGACCTCGACGCAGTTATTCAGGAAGCCCATCGCAGATTCCTCCAGGTTATCGATGA TGTTGTTTCAAACGGCGGAGTACATGGCGATGGTGTCGCTCGTATAGTCCTCACCGGCGGCGGTGCAGGAATTGGCTTAC TTAAGGAGCTATCCCATAGTTCAATTGATTGGTCAAAAATACATGTGTTCTTCGGTGATGAACGAAACGTACCAGTGACA CATCCAGATTCGAATGAGGGGCAAGCACGCGAAGTACTACTCAATCGAATTGCCATTCCATCATCAAACATCCATGGTTT CCATCTCAATGGTGGCGAGATGTCTACTCCCGCCTCAGCATATAGCGAATGCATCAATAAATATGCACCGCGAGGGTTTG ACCTTCATTTATTAGGAATGGGCGGCGAAGGACACATCAATTCGTTGTTCCCCGATTCATCGGCTATTAAAGAAGATGTA CACCTAGTCTCTGTGGTTACCGACTCTCCAAAGCCACCAGCACAGCGTGTGTCGCTCACGCTTCCTGCTGTAAATTCTTC TGCACGTGTGTGGCTACTCGTTGCCGGTGCAGAAAAAGCTGAAGCAGCACAGCACGTCGTTGCTGCTTCACCAGCCGACC AATGGCCAGCTGCAGGCGTTCACGGCACCAAAGAAACGTTACTTATACTCGATAATTCGGCAGCACAGCTTCTTTAG
Upstream 100 bases:
>100_bases CGCCATCTCGACCCAGATATCGCTTATGCTCGAGCACTTCGCGGTCTGAGTAGAGTGTCCTATCCTACTCAATAAAATTT TCGAAAGATGAAGCACTTTT
Downstream 100 bases:
>100_bases TCGTATAAAACCAAAACGTGTGGGGCGGAAAGCTGAATTTTAGCTTTCCGCCCCACACGTTTTGGTTTTACTTGTATGCC TGAATGAGGTTCAACGCAAC
Product: 6-phosphogluconolactonase
Products: NA
Alternate protein names: 6PGL [H]
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MVEVIRVSDLDAVIQEAHRRFLQVIDDVVSNGGVHGDGVARIVLTGGGAGIGLLKELSHSSIDWSKIHVFFGDERNVPVT HPDSNEGQAREVLLNRIAIPSSNIHGFHLNGGEMSTPASAYSECINKYAPRGFDLHLLGMGGEGHINSLFPDSSAIKEDV HLVSVVTDSPKPPAQRVSLTLPAVNSSARVWLLVAGAEKAEAAQHVVAASPADQWPAAGVHGTKETLLILDNSAAQLL
Sequences:
>Translated_238_residues MVEVIRVSDLDAVIQEAHRRFLQVIDDVVSNGGVHGDGVARIVLTGGGAGIGLLKELSHSSIDWSKIHVFFGDERNVPVT HPDSNEGQAREVLLNRIAIPSSNIHGFHLNGGEMSTPASAYSECINKYAPRGFDLHLLGMGGEGHINSLFPDSSAIKEDV HLVSVVTDSPKPPAQRVSLTLPAVNSSARVWLLVAGAEKAEAAQHVVAASPADQWPAAGVHGTKETLLILDNSAAQLL >Mature_238_residues MVEVIRVSDLDAVIQEAHRRFLQVIDDVVSNGGVHGDGVARIVLTGGGAGIGLLKELSHSSIDWSKIHVFFGDERNVPVT HPDSNEGQAREVLLNRIAIPSSNIHGFHLNGGEMSTPASAYSECINKYAPRGFDLHLLGMGGEGHINSLFPDSSAIKEDV HLVSVVTDSPKPPAQRVSLTLPAVNSSARVWLLVAGAEKAEAAQHVVAASPADQWPAAGVHGTKETLLILDNSAAQLL
Specific function: Hydrolysis of 6-phosphogluconolactone to 6- phosphogluconate [H]
COG id: COG0363
COG function: function code G; 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily [H]
Homologues:
Organism=Homo sapiens, GI52145310, Length=223, Percent_Identity=34.9775784753363, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI6912586, Length=180, Percent_Identity=35.5555555555556, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI115533060, Length=187, Percent_Identity=31.0160427807487, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI115533058, Length=187, Percent_Identity=31.0160427807487, Blast_Score=92, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6321687, Length=253, Percent_Identity=29.2490118577075, Blast_Score=91, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6321957, Length=168, Percent_Identity=30.952380952381, Blast_Score=86, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6324362, Length=181, Percent_Identity=32.5966850828729, Blast_Score=83, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6319918, Length=178, Percent_Identity=33.1460674157303, Blast_Score=83, Evalue=4e-17, Organism=Drosophila melanogaster, GI24641119, Length=199, Percent_Identity=35.1758793969849, Blast_Score=94, Evalue=9e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005900 - InterPro: IPR006148 [H]
Pfam domain/function: PF01182 Glucosamine_iso [H]
EC number: =3.1.1.31 [H]
Molecular weight: Translated: 25202; Mature: 25202
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVEVIRVSDLDAVIQEAHRRFLQVIDDVVSNGGVHGDGVARIVLTGGGAGIGLLKELSHS CEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHCCC SIDWSKIHVFFGDERNVPVTHPDSNEGQAREVLLNRIAIPSSNIHGFHLNGGEMSTPASA CCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHH YSECINKYAPRGFDLHLLGMGGEGHINSLFPDSSAIKEDVHLVSVVTDSPKPPAQRVSLT HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHCEEEEEEEECCCCCCHHEEEEE LPAVNSSARVWLLVAGAEKAEAAQHVVAASPADQWPAAGVHGTKETLLILDNSAAQLL EECCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCHHHCC >Mature Secondary Structure MVEVIRVSDLDAVIQEAHRRFLQVIDDVVSNGGVHGDGVARIVLTGGGAGIGLLKELSHS CEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHCCC SIDWSKIHVFFGDERNVPVTHPDSNEGQAREVLLNRIAIPSSNIHGFHLNGGEMSTPASA CCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHH YSECINKYAPRGFDLHLLGMGGEGHINSLFPDSSAIKEDVHLVSVVTDSPKPPAQRVSLT HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHCEEEEEEEECCCCCCHHEEEEE LPAVNSSARVWLLVAGAEKAEAAQHVVAASPADQWPAAGVHGTKETLLILDNSAAQLL EECCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]