Click here to switch to the map view.

The map label for this gene is yeiE [C]

Identifier: 38233501

GI number: 38233501

Start: 876064

End: 876960

Strand: Reverse

Name: yeiE [C]

Synonym: DIP0905

Alternate gene names: 38233501

Gene position: 876960-876064 (Counterclockwise)

Preceding gene: 38233510

Following gene: 38233500

Centisome position: 35.24

GC content: 57.86

Gene sequence:

>897_bases
GTGGCCAATGTGAAAACTCTTGTCGAGCCCGCAGCTCTCGCATTACTCATCGCAGTCGACGAATACGGCAGCGTGAGCGC
CGCTGCGGACATCGTGGGCACGTCGCAAGCAAATGCCAGCCGATCCCTCAGCCGTGCCGAACATCGCCTCGGAGCCCAAC
TCCTCAACCGCGGCTCCCAAGGCACCACCCTCACCGCAGCCGGACAAATCGTGGTCCAACACGCACGCACCATCATCCGC
GGCTACCACGACCTCGAAGCCGCCTTTCGAAACCTCGGTGACTCCCCCGTGGGGCTACGAATCGCTGCCAGCAACACCAT
CGCTGATCACCTACTCCCACACTGGCTTCATGTTTGGGATGGCTCAGTACTAGCACTAACCACCACCAATAGTTCAGAAG
TAGTCGCTGGCCTCCACCGCCGCCAATGGGACCTCGGATTTATCGAAACCCCAGAATTTAGCGCCGGAATCCATCACAGT
GTGGTTGCCCACGACGAACTCATCGTGGTGTGCACACCCGATCACCCCATGGCACAGCTCGACCACGTCACCATCACCGA
TCTATCTACCACCGCACTCATCACCCGCGAAAAAGGATCAGGTACACGCATCTGTCTCGAACGCGCCTTGGGACAACCGC
CGCTGATCAAATTAGAAGTGTCATCAAATGCTGCGGTTCGATCCGCTGTCCTTTCCGGATCAGCTCCAGCAGTTTTATCG
CATACGGTAGTCAAAGACGATCTAGCTGCAGGATCACTCAAACGAATCCCCACGGAGGGAATCGACCTCACCCGTCCTCT
GACTGCTGTGTGGTCAGGGCCACGAGCCCTTCCTCCTGCTGCCGCACAATTGGTTGCAGTGGCGCGTGAGCTTTCGTGCA
CTGAGTCATCGCTATAA

Upstream 100 bases:

>100_bases
GGTTATTATTCACGAATCATTACTGTGGCACGCATTGATACGACAGTGGTAACACACGTTATTCACTACCCCATGTGCAC
CGGATATAGCCATTGGTAGA

Downstream 100 bases:

>100_bases
GCTAGTACGGCACACTAATTATCAGACGCGGTGGCGATGGAATAGACCGCCACCAGACTTTGCCTCTCCAAGGAGTATGT
CACCTGTGAGCAATCCTCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MANVKTLVEPAALALLIAVDEYGSVSAAADIVGTSQANASRSLSRAEHRLGAQLLNRGSQGTTLTAAGQIVVQHARTIIR
GYHDLEAAFRNLGDSPVGLRIAASNTIADHLLPHWLHVWDGSVLALTTTNSSEVVAGLHRRQWDLGFIETPEFSAGIHHS
VVAHDELIVVCTPDHPMAQLDHVTITDLSTTALITREKGSGTRICLERALGQPPLIKLEVSSNAAVRSAVLSGSAPAVLS
HTVVKDDLAAGSLKRIPTEGIDLTRPLTAVWSGPRALPPAAAQLVAVARELSCTESSL

Sequences:

>Translated_298_residues
MANVKTLVEPAALALLIAVDEYGSVSAAADIVGTSQANASRSLSRAEHRLGAQLLNRGSQGTTLTAAGQIVVQHARTIIR
GYHDLEAAFRNLGDSPVGLRIAASNTIADHLLPHWLHVWDGSVLALTTTNSSEVVAGLHRRQWDLGFIETPEFSAGIHHS
VVAHDELIVVCTPDHPMAQLDHVTITDLSTTALITREKGSGTRICLERALGQPPLIKLEVSSNAAVRSAVLSGSAPAVLS
HTVVKDDLAAGSLKRIPTEGIDLTRPLTAVWSGPRALPPAAAQLVAVARELSCTESSL
>Mature_297_residues
ANVKTLVEPAALALLIAVDEYGSVSAAADIVGTSQANASRSLSRAEHRLGAQLLNRGSQGTTLTAAGQIVVQHARTIIRG
YHDLEAAFRNLGDSPVGLRIAASNTIADHLLPHWLHVWDGSVLALTTTNSSEVVAGLHRRQWDLGFIETPEFSAGIHHSV
VAHDELIVVCTPDHPMAQLDHVTITDLSTTALITREKGSGTRICLERALGQPPLIKLEVSSNAAVRSAVLSGSAPAVLSH
TVVKDDLAAGSLKRIPTEGIDLTRPLTAVWSGPRALPPAAAQLVAVARELSCTESSL

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=266, Percent_Identity=28.9473684210526, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786401, Length=271, Percent_Identity=25.4612546125461, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081904, Length=259, Percent_Identity=25.8687258687259, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790399, Length=215, Percent_Identity=26.5116279069767, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787879, Length=288, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31375; Mature: 31244

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANVKTLVEPAALALLIAVDEYGSVSAAADIVGTSQANASRSLSRAEHRLGAQLLNRGSQ
CCCHHHHHHHHHEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
GTTLTAAGQIVVQHARTIIRGYHDLEAAFRNLGDSPVGLRIAASNTIADHLLPHWLHVWD
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCC
GSVLALTTTNSSEVVAGLHRRQWDLGFIETPEFSAGIHHSVVAHDELIVVCTPDHPMAQL
CCEEEEEECCCHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEECCCEEEEECCCCCHHHC
DHVTITDLSTTALITREKGSGTRICLERALGQPPLIKLEVSSNAAVRSAVLSGSAPAVLS
CCEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCHHHH
HTVVKDDLAAGSLKRIPTEGIDLTRPLTAVWSGPRALPPAAAQLVAVARELSCTESSL
HHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ANVKTLVEPAALALLIAVDEYGSVSAAADIVGTSQANASRSLSRAEHRLGAQLLNRGSQ
CCHHHHHHHHHEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
GTTLTAAGQIVVQHARTIIRGYHDLEAAFRNLGDSPVGLRIAASNTIADHLLPHWLHVWD
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCC
GSVLALTTTNSSEVVAGLHRRQWDLGFIETPEFSAGIHHSVVAHDELIVVCTPDHPMAQL
CCEEEEEECCCHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEECCCEEEEECCCCCHHHC
DHVTITDLSTTALITREKGSGTRICLERALGQPPLIKLEVSSNAAVRSAVLSGSAPAVLS
CCEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCHHHH
HTVVKDDLAAGSLKRIPTEGIDLTRPLTAVWSGPRALPPAAAQLVAVARELSCTESSL
HHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]