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The map label for this gene is yjcF [C]

Identifier: 21674877

GI number: 21674877

Start: 1960280

End: 1961599

Strand: Direct

Name: yjcF [C]

Synonym: CT2067

Alternate gene names: 21674877

Gene position: 1960280-1961599 (Clockwise)

Preceding gene: 21674874

Following gene: 21674884

Centisome position: 90.97

GC content: 54.92

Gene sequence:

>1320_bases
ATGAAAATCCACAGCCAGGCCTTTCCGGCAATCATTCTTGCGATCACGCTCTCCGCCCCATCCATTGCCCATGCCTATAA
CCGCGATCAGCTGCAGTTGCTCCAGAAAAGCGTTGCTGAATGGAATGCCATGCGAAATCAACATCCGGAGCTTGCTATCG
ACCTCTCCAAAGCCAATCTCGAGGATGCGAAGCTGAACGGCGCGAATCTGTCGAAAGCCAATCTCTCCAAAGCCGATCTC
AGCGGAGCGTCACTCGACAAGGCAAATCTCGAGGGTGCGAACCTATCAATGACGTATCTGAAAAAAGCCAACATGAAAGC
CGTCAATGCCGCCCACGCCTGGCTTGCTGACGCGAACCTGAACGGTGCTTTCATGAAAGATGCCTCTCTGAAAGCGGCCA
ATCTTGCGAGAGCAAACCTGAGATGGGCGAAGATGAGTGGTGCCGATCTGGAACAGGCCAGCCTCAAAGATGCGGTGCTG
TTCGAAGCGGATATGGAAGGCGCAAACCTCAAGGGCACACAGTTCAACAAAGCACGATTCCTCGGAAACGCCATACTGAA
AGATGCTGTCCTGTCAAACAACAGCGTACTGCCCTCAGGCGAGCCGGTCACTCGCGGCTGGGCAATGATGCACGACGCTC
GTTTCGCCAAAGAGGAACCTGCCGCGCCACTGGAGTTCGTGCCACCGGTCGTGGCCGCGCCGGTGATCATTCCGGAGAAC
ATGCCAGCGGGAGGCGTTCAGGCCATTCCAGCACAGCCCGTGCCAGATGTAAGGGAGGTCGAGGAGTGGAATGCCATGCG
ACAGAACAATCCTGAAGCGAAAATTGAAATGACCGAGGAAAAACTTGGTCACGCAGAACTCGGTGGCGTCGATCTGAGAA
AAGCGTCATTATCTAAGTCTGATTTCGAGCGGGCCAACCTTGACAAGGCCAATCTGGCGGGAGCGAACCTGGCCGGAGTA
AACTTCCAGAGAGCTGACATGAAAGAGGCAAACCTGAAAGGTGCGAATCTTGAAGGTGCGAACCTCGACAGGGCCTTCCT
GAAGGGGGCTGACCTTTCAGGCGCCAACCTCAAGGGTGCCATACTGTACGGAGCGATGCTTTATGGGGCAAATCTGGATG
GAGCGATACTGACCAATGTCTCGCTGTTCGACGCCAATCTGGAAAAAGCTTCCCTGAAAGGGGCTGACCTGACCGGTGCG
ACCTTGATCGGAGTGAACCTGACCAATGCGCTCATCTCTCCAGCCACGACCACGCCTTCAGGCAAAAAGGCGACACGAGG
CTGGGCAACGCTCAACAACGCTGTGTTCATCGATAAATAA

Upstream 100 bases:

>100_bases
CTTTTTCATTAAGTTTCAACATAAGCCGCTGCTTGCAAGGGAAAACAAACGGCACGCCCGTCAAGTCAGCATTCTTCCAG
ACACCATACAACATCGCACC

Downstream 100 bases:

>100_bases
CTGAGGCCGTAACGCTAAACAGGAAAGGTTCCATCATGGCTAACATTCTTGTCGCAAGCTACTACAGCCGTTGGGATCTG
GCTGAGCACAAAGGAAGAAT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MKIHSQAFPAIILAITLSAPSIAHAYNRDQLQLLQKSVAEWNAMRNQHPELAIDLSKANLEDAKLNGANLSKANLSKADL
SGASLDKANLEGANLSMTYLKKANMKAVNAAHAWLADANLNGAFMKDASLKAANLARANLRWAKMSGADLEQASLKDAVL
FEADMEGANLKGTQFNKARFLGNAILKDAVLSNNSVLPSGEPVTRGWAMMHDARFAKEEPAAPLEFVPPVVAAPVIIPEN
MPAGGVQAIPAQPVPDVREVEEWNAMRQNNPEAKIEMTEEKLGHAELGGVDLRKASLSKSDFERANLDKANLAGANLAGV
NFQRADMKEANLKGANLEGANLDRAFLKGADLSGANLKGAILYGAMLYGANLDGAILTNVSLFDANLEKASLKGADLTGA
TLIGVNLTNALISPATTTPSGKKATRGWATLNNAVFIDK

Sequences:

>Translated_439_residues
MKIHSQAFPAIILAITLSAPSIAHAYNRDQLQLLQKSVAEWNAMRNQHPELAIDLSKANLEDAKLNGANLSKANLSKADL
SGASLDKANLEGANLSMTYLKKANMKAVNAAHAWLADANLNGAFMKDASLKAANLARANLRWAKMSGADLEQASLKDAVL
FEADMEGANLKGTQFNKARFLGNAILKDAVLSNNSVLPSGEPVTRGWAMMHDARFAKEEPAAPLEFVPPVVAAPVIIPEN
MPAGGVQAIPAQPVPDVREVEEWNAMRQNNPEAKIEMTEEKLGHAELGGVDLRKASLSKSDFERANLDKANLAGANLAGV
NFQRADMKEANLKGANLEGANLDRAFLKGADLSGANLKGAILYGAMLYGANLDGAILTNVSLFDANLEKASLKGADLTGA
TLIGVNLTNALISPATTTPSGKKATRGWATLNNAVFIDK
>Mature_439_residues
MKIHSQAFPAIILAITLSAPSIAHAYNRDQLQLLQKSVAEWNAMRNQHPELAIDLSKANLEDAKLNGANLSKANLSKADL
SGASLDKANLEGANLSMTYLKKANMKAVNAAHAWLADANLNGAFMKDASLKAANLARANLRWAKMSGADLEQASLKDAVL
FEADMEGANLKGTQFNKARFLGNAILKDAVLSNNSVLPSGEPVTRGWAMMHDARFAKEEPAAPLEFVPPVVAAPVIIPEN
MPAGGVQAIPAQPVPDVREVEEWNAMRQNNPEAKIEMTEEKLGHAELGGVDLRKASLSKSDFERANLDKANLAGANLAGV
NFQRADMKEANLKGANLEGANLDRAFLKGADLSGANLKGAILYGAMLYGANLDGAILTNVSLFDANLEKASLKGADLTGA
TLIGVNLTNALISPATTTPSGKKATRGWATLNNAVFIDK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=140, Percent_Identity=37.1428571428571, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI221377802, Length=175, Percent_Identity=33.1428571428571, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 46535; Mature: 46535

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIHSQAFPAIILAITLSAPSIAHAYNRDQLQLLQKSVAEWNAMRNQHPELAIDLSKANL
CCCCCHHCCEEEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
EDAKLNGANLSKANLSKADLSGASLDKANLEGANLSMTYLKKANMKAVNAAHAWLADANL
CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEHHHCCCHHHHHHHHEEECCCC
NGAFMKDASLKAANLARANLRWAKMSGADLEQASLKDAVLFEADMEGANLKGTQFNKARF
CCEEEECCCCCHHHHHHHCEEEEECCCCCCHHHHCCCEEEEEECCCCCCCCCCCCHHHHH
LGNAILKDAVLSNNSVLPSGEPVTRGWAMMHDARFAKEEPAAPLEFVPPVVAAPVIIPEN
HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCHHHHCCEEECCC
MPAGGVQAIPAQPVPDVREVEEWNAMRQNNPEAKIEMTEEKLGHAELGGVDLRKASLSKS
CCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCCCEEHHHHCCHH
DFERANLDKANLAGANLAGVNFQRADMKEANLKGANLEGANLDRAFLKGADLSGANLKGA
HHHHHCCCCHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHH
ILYGAMLYGANLDGAILTNVSLFDANLEKASLKGADLTGATLIGVNLTNALISPATTTPS
HEEEEHHCCCCCCCEEEEEEEEEECCCHHHHCCCCCCCCEEEEEEEHHHHHCCCCCCCCC
GKKATRGWATLNNAVFIDK
CCCCCCCCEEECCEEEEEC
>Mature Secondary Structure
MKIHSQAFPAIILAITLSAPSIAHAYNRDQLQLLQKSVAEWNAMRNQHPELAIDLSKANL
CCCCCHHCCEEEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
EDAKLNGANLSKANLSKADLSGASLDKANLEGANLSMTYLKKANMKAVNAAHAWLADANL
CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEHHHCCCHHHHHHHHEEECCCC
NGAFMKDASLKAANLARANLRWAKMSGADLEQASLKDAVLFEADMEGANLKGTQFNKARF
CCEEEECCCCCHHHHHHHCEEEEECCCCCCHHHHCCCEEEEEECCCCCCCCCCCCHHHHH
LGNAILKDAVLSNNSVLPSGEPVTRGWAMMHDARFAKEEPAAPLEFVPPVVAAPVIIPEN
HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCHHHHCCEEECCC
MPAGGVQAIPAQPVPDVREVEEWNAMRQNNPEAKIEMTEEKLGHAELGGVDLRKASLSKS
CCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCCCEEHHHHCCHH
DFERANLDKANLAGANLAGVNFQRADMKEANLKGANLEGANLDRAFLKGADLSGANLKGA
HHHHHCCCCHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHH
ILYGAMLYGANLDGAILTNVSLFDANLEKASLKGADLTGATLIGVNLTNALISPATTTPS
HEEEEHHCCCCCCCEEEEEEEEEECCCHHHHCCCCCCCCEEEEEEEHHHHHCCCCCCCCC
GKKATRGWATLNNAVFIDK
CCCCCCCCEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]