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The map label for this gene is comF [H]

Identifier: 21674817

GI number: 21674817

Start: 1900842

End: 1901519

Strand: Reverse

Name: comF [H]

Synonym: CT2006

Alternate gene names: 21674817

Gene position: 1901519-1900842 (Counterclockwise)

Preceding gene: 21674818

Following gene: 21674816

Centisome position: 88.24

GC content: 64.01

Gene sequence:

>678_bases
GTGCATCTGCTCTTTCCCGAGGTCTGCATTCTCTGCCAGAAGCCGCTCGGTGAGGGCGAGGAGCACATCTGCGCCGGATG
CTTCAATGATTTCAACCCGTTTCCGTCCGTACTTGCCGGAGGCGCGGCACTCAAAAGCACGGTGCGTGCGCACTTTGGCG
AGAAGGCGGTTCCAGCGGCGGCATGGTGCCTCTACCCTTACCGCAGCCGCGGCAGTCTGCACGAGGCGATGCATGCTATG
AAATATGGCGGACTGTTTCCCTTGGGTGAACTGTTCGGTAAGCGGCTCGGGGAGCTTATCTGTCAGGGGGGTGTGCCGGT
CGGGTTCGATGCGATCGTGCCGGTGCCACTGCACCATCTCAAGCGCATCGAGCGCACGTACAACCAGGCCGAAGCGCTTG
CCCGCGGCATGGCTGGTCTGATCGGCCTGCCCGTTGCGACACGGAGTCTTGAGCGTTGTGTCTATACTGGCACGCAGACC
GGGCTTGGCCTGGAGGCGCGGCGCGAAAACATGGCGGGAGCCTTCCGCCCGGGCCGCGAACGCTGCCCCGCGCGGGTGCT
GCTGGTCGATGACGTACTCACGACCGGCGCGACAATGGTGTCGGCGGCAAAGGTGCTGAAAGCCGCCGGCGCGGTCGAGG
TGGCTTTTGCGACCGTTGCCCTCACCGAAAAGGAGTAG

Upstream 100 bases:

>100_bases
ATCGTTCCAGCCCGGCTCGGCAACAAGGCCGGGATCTACGGCGCGGCAGCGCTCTGTTTCAACGCCGCAAAACCTCCCGC
AAGCGATGCTTGACGGACTG

Downstream 100 bases:

>100_bases
CCGGAGATGGATCTTTTTTACGTTTTGCCGCACCAGCTCGATCTTGAACATGCCTGGGCGATCATCGACGGTGAAGAGTT
CCACCATCTCGCCCGCGTGT

Product: competence protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MHLLFPEVCILCQKPLGEGEEHICAGCFNDFNPFPSVLAGGAALKSTVRAHFGEKAVPAAAWCLYPYRSRGSLHEAMHAM
KYGGLFPLGELFGKRLGELICQGGVPVGFDAIVPVPLHHLKRIERTYNQAEALARGMAGLIGLPVATRSLERCVYTGTQT
GLGLEARRENMAGAFRPGRERCPARVLLVDDVLTTGATMVSAAKVLKAAGAVEVAFATVALTEKE

Sequences:

>Translated_225_residues
MHLLFPEVCILCQKPLGEGEEHICAGCFNDFNPFPSVLAGGAALKSTVRAHFGEKAVPAAAWCLYPYRSRGSLHEAMHAM
KYGGLFPLGELFGKRLGELICQGGVPVGFDAIVPVPLHHLKRIERTYNQAEALARGMAGLIGLPVATRSLERCVYTGTQT
GLGLEARRENMAGAFRPGRERCPARVLLVDDVLTTGATMVSAAKVLKAAGAVEVAFATVALTEKE
>Mature_225_residues
MHLLFPEVCILCQKPLGEGEEHICAGCFNDFNPFPSVLAGGAALKSTVRAHFGEKAVPAAAWCLYPYRSRGSLHEAMHAM
KYGGLFPLGELFGKRLGELICQGGVPVGFDAIVPVPLHHLKRIERTYNQAEALARGMAGLIGLPVATRSLERCVYTGTQT
GLGLEARRENMAGAFRPGRERCPARVLLVDDVLTTGATMVSAAKVLKAAGAVEVAFATVALTEKE

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 24046; Mature: 24046

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLLFPEVCILCQKPLGEGEEHICAGCFNDFNPFPSVLAGGAALKSTVRAHFGEKAVPAA
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCCCCHH
AWCLYPYRSRGSLHEAMHAMKYGGLFPLGELFGKRLGELICQGGVPVGFDAIVPVPLHHL
HHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
KRIERTYNQAEALARGMAGLIGLPVATRSLERCVYTGTQTGLGLEARRENMAGAFRPGRE
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHH
RCPARVLLVDDVLTTGATMVSAAKVLKAAGAVEVAFATVALTEKE
CCCEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCC
>Mature Secondary Structure
MHLLFPEVCILCQKPLGEGEEHICAGCFNDFNPFPSVLAGGAALKSTVRAHFGEKAVPAA
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCCCCHH
AWCLYPYRSRGSLHEAMHAMKYGGLFPLGELFGKRLGELICQGGVPVGFDAIVPVPLHHL
HHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
KRIERTYNQAEALARGMAGLIGLPVATRSLERCVYTGTQTGLGLEARRENMAGAFRPGRE
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHH
RCPARVLLVDDVLTTGATMVSAAKVLKAAGAVEVAFATVALTEKE
CCCEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]