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The map label for this gene is ybiR [C]

Identifier: 21674776

GI number: 21674776

Start: 1864273

End: 1865361

Strand: Reverse

Name: ybiR [C]

Synonym: CT1965

Alternate gene names: 21674776

Gene position: 1865361-1864273 (Counterclockwise)

Preceding gene: 21674777

Following gene: 21674775

Centisome position: 86.56

GC content: 37.65

Gene sequence:

>1089_bases
GTGTTTTTGAAAGTTCAAGCGTCATTGATTGATTTTGTCTTAAAGGAATGGTTGCTGGTAGGCTCTGGCGTGGTTTTGGT
GTTGACGTCCGTTTATATAAAGCGTTTGCCAGAATACTCAGCCAATGAAATACAGGTTCTATTTCTCCTGTTTGTTTTAT
TTATTGCAGTAAATGGACTGCTGAAAAGCGGAACTATATTAAAAATCGCTCAAAAAATAGAGAAAGGGAAGCTCATACCC
TTAAAGTTGGTAGTAATAACATTTTTCCTTTCAATGCTGGTAACGAACGATATTTCTCTAATAGTTATTGTACCGCTCAC
GTTATCACTTACTGTAAATAGGAAAGGAATACTTGTAATTCTCGAGGCATTGGCTGCCAATGCAGGGTCGGCATTAACAC
CAGTAGGCAATCCTCAAAACCTTTTTATTTACTGGTTCTATAATGTTCCCCCAGGCGTATTTATCAAAACAATAGCACCG
TTTTCTTTGATGTTTCTCGTTTTGTTAATAATTGCCTCGCTTTCTTTTAGAACCAAAAGAGTGTTACAGGAAAACCATGT
TCAGAACATAAATAAAAAAGCATTTGTTTATGGTGTGTTGCTTGCTATTGTGCTCCTGGCAGTCTTTCATGTTCTTCCTG
TTTTAAGTGCCGTTGTGGTCATCCTTTTTGCGCTGATTTTTGACCGAAAATCTCTGAATGTTGATTATGCGCTATTATTT
AGTTTCCTTTTCTTTTTTGGTATTGCCGACAATCTCAAGGTAATTTTAGGTCCCAAAATCACTCATTCTGAGCATATTTT
CCTGTTTTCAGTCTTGGCAAGCCAGGTTATGAGTAATGTTCCAGCAGCACTGTTGTTTGCTAATTGCACGCCCAAGTGGC
AGGCATTGTTGTGGGGCGTGAATGCAGGAGGATTTGGCAGTTTATTTGGTTCACTGGCAAATCTGATAGCTTACAAAATA
TATGTCAAAAACAAGGGTACAAATGATACTGTTGGATTTACTGTCAAGTTTCTCGTCATAGGTTACATTGCATTATTTGT
ATCAATAGGGCTATATTTTCTATTGTATGGTGCGGATGTTTCGTTATGA

Upstream 100 bases:

>100_bases
CCCAACAAGGCGCTCCAGCGGACTGACCGACCGCCGCTCCGCGTCGGTCGGTCAGTCCGCCCCTGAGCTTCGGCGTTAGC
CCCCAAATACAATAAGCGGA

Downstream 100 bases:

>100_bases
AATATCAAGGAGCTAACAAGGCGCTCCACCTGACCGCTATTCTGCTACGTTCCATAACGGCAGGTGAGCTTAAGCGTTAT
GTGCAAACAAATGAGAAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MFLKVQASLIDFVLKEWLLVGSGVVLVLTSVYIKRLPEYSANEIQVLFLLFVLFIAVNGLLKSGTILKIAQKIEKGKLIP
LKLVVITFFLSMLVTNDISLIVIVPLTLSLTVNRKGILVILEALAANAGSALTPVGNPQNLFIYWFYNVPPGVFIKTIAP
FSLMFLVLLIIASLSFRTKRVLQENHVQNINKKAFVYGVLLAIVLLAVFHVLPVLSAVVVILFALIFDRKSLNVDYALLF
SFLFFFGIADNLKVILGPKITHSEHIFLFSVLASQVMSNVPAALLFANCTPKWQALLWGVNAGGFGSLFGSLANLIAYKI
YVKNKGTNDTVGFTVKFLVIGYIALFVSIGLYFLLYGADVSL

Sequences:

>Translated_362_residues
MFLKVQASLIDFVLKEWLLVGSGVVLVLTSVYIKRLPEYSANEIQVLFLLFVLFIAVNGLLKSGTILKIAQKIEKGKLIP
LKLVVITFFLSMLVTNDISLIVIVPLTLSLTVNRKGILVILEALAANAGSALTPVGNPQNLFIYWFYNVPPGVFIKTIAP
FSLMFLVLLIIASLSFRTKRVLQENHVQNINKKAFVYGVLLAIVLLAVFHVLPVLSAVVVILFALIFDRKSLNVDYALLF
SFLFFFGIADNLKVILGPKITHSEHIFLFSVLASQVMSNVPAALLFANCTPKWQALLWGVNAGGFGSLFGSLANLIAYKI
YVKNKGTNDTVGFTVKFLVIGYIALFVSIGLYFLLYGADVSL
>Mature_362_residues
MFLKVQASLIDFVLKEWLLVGSGVVLVLTSVYIKRLPEYSANEIQVLFLLFVLFIAVNGLLKSGTILKIAQKIEKGKLIP
LKLVVITFFLSMLVTNDISLIVIVPLTLSLTVNRKGILVILEALAANAGSALTPVGNPQNLFIYWFYNVPPGVFIKTIAP
FSLMFLVLLIIASLSFRTKRVLQENHVQNINKKAFVYGVLLAIVLLAVFHVLPVLSAVVVILFALIFDRKSLNVDYALLF
SFLFFFGIADNLKVILGPKITHSEHIFLFSVLASQVMSNVPAALLFANCTPKWQALLWGVNAGGFGSLFGSLANLIAYKI
YVKNKGTNDTVGFTVKFLVIGYIALFVSIGLYFLLYGADVSL

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=277, Percent_Identity=35.7400722021661, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 39855; Mature: 39855

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLKVQASLIDFVLKEWLLVGSGVVLVLTSVYIKRLPEYSANEIQVLFLLFVLFIAVNGL
CEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LKSGTILKIAQKIEKGKLIPLKLVVITFFLSMLVTNDISLIVIVPLTLSLTVNRKGILVI
HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCHHHH
LEALAANAGSALTPVGNPQNLFIYWFYNVPPGVFIKTIAPFSLMFLVLLIIASLSFRTKR
HHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VLQENHVQNINKKAFVYGVLLAIVLLAVFHVLPVLSAVVVILFALIFDRKSLNVDYALLF
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SFLFFFGIADNLKVILGPKITHSEHIFLFSVLASQVMSNVPAALLFANCTPKWQALLWGV
HHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHEEEC
NAGGFGSLFGSLANLIAYKIYVKNKGTNDTVGFTVKFLVIGYIALFVSIGLYFLLYGADV
CCCCHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SL
CC
>Mature Secondary Structure
MFLKVQASLIDFVLKEWLLVGSGVVLVLTSVYIKRLPEYSANEIQVLFLLFVLFIAVNGL
CEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LKSGTILKIAQKIEKGKLIPLKLVVITFFLSMLVTNDISLIVIVPLTLSLTVNRKGILVI
HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCHHHH
LEALAANAGSALTPVGNPQNLFIYWFYNVPPGVFIKTIAPFSLMFLVLLIIASLSFRTKR
HHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VLQENHVQNINKKAFVYGVLLAIVLLAVFHVLPVLSAVVVILFALIFDRKSLNVDYALLF
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SFLFFFGIADNLKVILGPKITHSEHIFLFSVLASQVMSNVPAALLFANCTPKWQALLWGV
HHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHEEEC
NAGGFGSLFGSLANLIAYKIYVKNKGTNDTVGFTVKFLVIGYIALFVSIGLYFLLYGADV
CCCCHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]