| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
Click here to switch to the map view.
The map label for this gene is 21674521
Identifier: 21674521
GI number: 21674521
Start: 1614257
End: 1614718
Strand: Direct
Name: 21674521
Synonym: CT1704
Alternate gene names: NA
Gene position: 1614257-1614718 (Clockwise)
Preceding gene: 21674513
Following gene: 21674522
Centisome position: 74.91
GC content: 55.63
Gene sequence:
>462_bases TTGTCCATGAAAATCGGCAAAGTATTGACAGTGGTTCTGGTCGTTCTTATTCTGATTCAGCTCATCCCCGGACCAAGCCA CGAAAATCCACCGGTCACCGGCACACCCAAATGGGACAGCCCCCGGACGGAGGAACTGTTCAAGCGATCCTGCGCCAACT GCCACTCCAACGAAACCATCTGGCCCTGGTACAGCACCATCGCCCCGCTGTCGTGGATCATCAACCTCGACGTCAGTGTA GGCCGGTCGAAATTCAACGTCTCCGAATGGGGACGGCCCGGCAAAAACGATGGCGATGAAGCTGCCGGCGAACTCAGGCA CGGCAAGATGCCGCCATGGTTTTACATGCCAGCGCATCCCGAGGCGAAGCTGACCGCCGCTGAGAAGGATGAACTGGTCA AGGGCTTGGCGGCAACCTTCGGCGACAAAAGTGCGGAAAAAGAAAAAAAAGAAGAGAAATAA
Upstream 100 bases:
>100_bases GCCGCCAACCGGGCCATGATTGGTAAAGCAACGTAAAGGTTTTACTTTCATGGTACCGAACAGCTGACTTTTTCCCGGTC ACAACTCACAAAAGGAGAAC
Downstream 100 bases:
>100_bases CACCGACACGGCACTTTCATGGCAGCCGGGTTGCGTGACGGTAACCCGGCATGCACGCTCCGGAGGCAATAATCCGGAAG CTTGTGCTATTTGCAAAATG
Product: cytochrome c, putative
Products: NA
Alternate protein names: Signal Peptide
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MSMKIGKVLTVVLVVLILIQLIPGPSHENPPVTGTPKWDSPRTEELFKRSCANCHSNETIWPWYSTIAPLSWIINLDVSV GRSKFNVSEWGRPGKNDGDEAAGELRHGKMPPWFYMPAHPEAKLTAAEKDELVKGLAATFGDKSAEKEKKEEK
Sequences:
>Translated_153_residues MSMKIGKVLTVVLVVLILIQLIPGPSHENPPVTGTPKWDSPRTEELFKRSCANCHSNETIWPWYSTIAPLSWIINLDVSV GRSKFNVSEWGRPGKNDGDEAAGELRHGKMPPWFYMPAHPEAKLTAAEKDELVKGLAATFGDKSAEKEKKEEK >Mature_152_residues SMKIGKVLTVVLVVLILIQLIPGPSHENPPVTGTPKWDSPRTEELFKRSCANCHSNETIWPWYSTIAPLSWIINLDVSVG RSKFNVSEWGRPGKNDGDEAAGELRHGKMPPWFYMPAHPEAKLTAAEKDELVKGLAATFGDKSAEKEKKEEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17038; Mature: 16906
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMKIGKVLTVVLVVLILIQLIPGPSHENPPVTGTPKWDSPRTEELFKRSCANCHSNETI CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC WPWYSTIAPLSWIINLDVSVGRSKFNVSEWGRPGKNDGDEAAGELRHGKMPPWFYMPAHP CCHHHHHHHHHHHHCCCHHCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCEEECCCCC EAKLTAAEKDELVKGLAATFGDKSAEKEKKEEK CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCC >Mature Secondary Structure SMKIGKVLTVVLVVLILIQLIPGPSHENPPVTGTPKWDSPRTEELFKRSCANCHSNETI CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC WPWYSTIAPLSWIINLDVSVGRSKFNVSEWGRPGKNDGDEAAGELRHGKMPPWFYMPAHP CCHHHHHHHHHHHHCCCHHCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCEEECCCCC EAKLTAAEKDELVKGLAATFGDKSAEKEKKEEK CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA