| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is ppd [H]
Identifier: 21674500
GI number: 21674500
Start: 1591416
End: 1594163
Strand: Direct
Name: ppd [H]
Synonym: CT1682
Alternate gene names: 21674500
Gene position: 1591416-1594163 (Clockwise)
Preceding gene: 21674498
Following gene: 21674504
Centisome position: 73.85
GC content: 60.52
Gene sequence:
>2748_bases ATGCCGAACTCGCACGCTAACGAAGAATCCGCCGCAGCCAAGAAGTACATTTACAGCTTTGCCGGCGGCGCCGCAGAAGG TGATGCCTCAATGAAAAATCTCCTCGGAGGCAAAGGAGCAAACCTGGCTGAAATGGCCAACATCGGCCTGCCGGTACCTC CCGGCTTCACTCTCTCCACCGAGGTCTGCGCCTATTACTACGATCATCAGAAAACTTACCCTGCAAACCTCTTCGAAACT GAAATTCCGGCAGCGCTAAAAAAAGTCGAGGACTATCTCGGAAAGAAGTTCGGCGACCCCGAAAACCCGCTCCTTGTCTC CGTCCGCTCCGGCGCACGCGCCTCGATGCCCGGCATGATGGACACGATCCTCAACCTCGGCCTCAACGACAAGACCGTCG AAGGGCTGGCCCGCAAATCGGGCAACCCCCGCTTCGCCTGGGACTGCTACCGCCGCTTCGTGTCGATGTACGGCGACGTC GTGCTCGACCTCAAACCGGCTGACAAAAAGCAGATTGATCCCTTCGAAGAGATTCTCGAACAGAAAAAGCAAGAGCTCGG CATCCACCTCGACACGGAACTTGGTGTCGATGACCTCAAAGACCTCGTAGGCAAATACAAAAAAGCGATCCTCGAAAAGA CCGGTAAAACCTTCCCCGAAAATCCGGAAGAGCAGCTTCGCGGCGCTATCAGCGCGGTGTTCAACAGCTGGAACAACGAG CGCGCCATCGTCTATCGCAAGCTGAACCACATCCCCGGCTGGTGGGGCACCGCCTGCAACGTACAGGCGATGGTGTTCGG CAACATGGGCGAAGACTGCGGCACCGGCGTGGCCTTCACCCGCGACGCAGCGACTGGCGACAACATCTTCTATGGCGAGT TCCTCATGAACGCCCAGGGTGAGGATGTGGTGGCCGGCACCCGCACGCCGCTGAAAATCGAGCAGCTCGCACAGGAAAAG CCTGCCATCTACAACCAGCTCGAAGAGATTCGTTCGATCCTCGAAAAGCACTACCGCGACATGATGGACATCGAGTTCAC CATCGAGAACGACAAGCTCTTCATGTTGCAGTGCCGCGTCGGCAAGCGCACCGGTTTGGCCGCCATCAAGATCGCTGTTG ACATGTACAACGAAGGTCTGATCGACGAGAAAGAGGTGCTGCGCCGTATCGAACCCGAGCAGCTCAACCAGCTTCTCCGT CCTGTTTTCGACCTCAAGGAAAAGAAAGCCGCCATCGACAGCGGACGCCTGCTCGCCACCGGCCTCAACGCCGGGCCTGG CGCTGCCACAGGCCGCGTCTACTTCAACGCTGACGACGCGATGGAAGCCAACGCGCGTGGCGAAAAGGTGATTCTGGTCA GAATCGAAACCTCTCCAGAAGACATCAAAGGCATGAACGCCGCCGAGGGTATCCTCACCGAGCGTGGCGGCATGACTTCG CACGCAGCACTCGTCGCCCGTCAGATGGGCAAGGTCTGCGTCGCTGGCTGCGGCACGCTCCGCATCGACTACAAGGCTGG TGAAATGCGTGTCGCAGGCAAGGATATCGTCATCAAGGAGGGCGAGTACATCTCCATCGACGGCACCACGGGCGAGGTCA TCGCCGGTGAGGTCAAGACCAAAAACTCCGAAATTCTCGAAGTGCTGATCGACAAGACCCTCGACCCGGCGGACGCTCCG ACCTTCAGGATTTACAACCAGCTCATGCAGTGGGCCGACAAGTACCGCAAGCTCAACATCCGCACCAACGCCGACCAGCC CGACCAGGCTGAAATCGCCATCACCTTCGGCGCGGAGGGCATCGGCCTGTGCCGCACCGAACACATGTTCTTCGGCGGCG ACCGCATCGACGCCATGCGCGAAATGATTCTGGCCGACGACATCGCGGGCCGCAAGGTGGCGCTCGACAAGCTGCTTCCC TACCAGCGCGACGACTTCTACGGTCTCTTCAAGGCGATGGGTTCGCGCCCGGTCACGGTGCGCCTGCTCGATCCGCCGCT GCACGAATTCCTGCCGCACACCGACGCCGAAATTGATGACCTGGCTGGCAAGATCGGCAAGACCAGCGCCGAGATCAAGG CCCGCATCGAGAGCCTGCACGAGTTCAACCCGATGCTCGGCCTGCGTGGCTGCCGCCTCGGCATTCTGCACCCGGAGATC ATCGTCATGCAGGTGCGCGCCATCATCGAAGCCGCCTGCCGCATCAAGCAGGAGGGACAGGAGATCGTGCCGGAAATCAT GGTTCCGCTGGTCAGCACCGTCAAGGAGCTCGAAATCACCAGCGAAGTGATTCACAAGACCGCCCGCAGCGTCATTTCCG AGCAGGGAGTCGGCGTGAAGTACCTGGTCGGCACCATGATCGAGGTGCCGCGCGCAGCCATCACCTCCGACCAGATCGCG CAGGCCGCCGACTTCTTCAGCTACGGCACCAACGACCTGACCCAGATGGGCCTCGGCATGAGCCGCGACGACTCCGGCCA GTTCCTGCCGATCTACCAGCAGCAGGAGATTTTCGCCCGCAACCCGTTCGAGAGCATCGACATCGATGGCGTTGGCCGCT TGGTCAGCATCTCGGCCAAAGAGGGGCGCTCGGTCAAGCCGGACCTCAAACTCGGCATCTGCGGCGAGCACGGCGGCGAC CCGGCCACGGTCGAGTTCTGCCACAAAACCGGTCTGAACTACGTCTCATGCAGCCCCTTCCGCGTGCCGATTGCACGCCT GGCGGCAGCCCGCGCGGCATTGCTCTGA
Upstream 100 bases:
>100_bases GTTTTTTTCTGTTAAATTGACGACTCGGAAAAGTAATTTTCCGAACCCTAATATTCATGAATTTATTGTTGTTTTTTCGG GTCAACCAACCAACAGGAAA
Downstream 100 bases:
>100_bases TCCACGGCAAACAGCAACAGTTCAACGCAAAAAGGCGGCTCTCAACGGGCCGCCTTTTTTGTTTCATGGATGAACGATCT TCAATTTTCAGAACGATGAT
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 915; Mature: 914
Protein sequence:
>915_residues MPNSHANEESAAAKKYIYSFAGGAAEGDASMKNLLGGKGANLAEMANIGLPVPPGFTLSTEVCAYYYDHQKTYPANLFET EIPAALKKVEDYLGKKFGDPENPLLVSVRSGARASMPGMMDTILNLGLNDKTVEGLARKSGNPRFAWDCYRRFVSMYGDV VLDLKPADKKQIDPFEEILEQKKQELGIHLDTELGVDDLKDLVGKYKKAILEKTGKTFPENPEEQLRGAISAVFNSWNNE RAIVYRKLNHIPGWWGTACNVQAMVFGNMGEDCGTGVAFTRDAATGDNIFYGEFLMNAQGEDVVAGTRTPLKIEQLAQEK PAIYNQLEEIRSILEKHYRDMMDIEFTIENDKLFMLQCRVGKRTGLAAIKIAVDMYNEGLIDEKEVLRRIEPEQLNQLLR PVFDLKEKKAAIDSGRLLATGLNAGPGAATGRVYFNADDAMEANARGEKVILVRIETSPEDIKGMNAAEGILTERGGMTS HAALVARQMGKVCVAGCGTLRIDYKAGEMRVAGKDIVIKEGEYISIDGTTGEVIAGEVKTKNSEILEVLIDKTLDPADAP TFRIYNQLMQWADKYRKLNIRTNADQPDQAEIAITFGAEGIGLCRTEHMFFGGDRIDAMREMILADDIAGRKVALDKLLP YQRDDFYGLFKAMGSRPVTVRLLDPPLHEFLPHTDAEIDDLAGKIGKTSAEIKARIESLHEFNPMLGLRGCRLGILHPEI IVMQVRAIIEAACRIKQEGQEIVPEIMVPLVSTVKELEITSEVIHKTARSVISEQGVGVKYLVGTMIEVPRAAITSDQIA QAADFFSYGTNDLTQMGLGMSRDDSGQFLPIYQQQEIFARNPFESIDIDGVGRLVSISAKEGRSVKPDLKLGICGEHGGD PATVEFCHKTGLNYVSCSPFRVPIARLAAARAALL
Sequences:
>Translated_915_residues MPNSHANEESAAAKKYIYSFAGGAAEGDASMKNLLGGKGANLAEMANIGLPVPPGFTLSTEVCAYYYDHQKTYPANLFET EIPAALKKVEDYLGKKFGDPENPLLVSVRSGARASMPGMMDTILNLGLNDKTVEGLARKSGNPRFAWDCYRRFVSMYGDV VLDLKPADKKQIDPFEEILEQKKQELGIHLDTELGVDDLKDLVGKYKKAILEKTGKTFPENPEEQLRGAISAVFNSWNNE RAIVYRKLNHIPGWWGTACNVQAMVFGNMGEDCGTGVAFTRDAATGDNIFYGEFLMNAQGEDVVAGTRTPLKIEQLAQEK PAIYNQLEEIRSILEKHYRDMMDIEFTIENDKLFMLQCRVGKRTGLAAIKIAVDMYNEGLIDEKEVLRRIEPEQLNQLLR PVFDLKEKKAAIDSGRLLATGLNAGPGAATGRVYFNADDAMEANARGEKVILVRIETSPEDIKGMNAAEGILTERGGMTS HAALVARQMGKVCVAGCGTLRIDYKAGEMRVAGKDIVIKEGEYISIDGTTGEVIAGEVKTKNSEILEVLIDKTLDPADAP TFRIYNQLMQWADKYRKLNIRTNADQPDQAEIAITFGAEGIGLCRTEHMFFGGDRIDAMREMILADDIAGRKVALDKLLP YQRDDFYGLFKAMGSRPVTVRLLDPPLHEFLPHTDAEIDDLAGKIGKTSAEIKARIESLHEFNPMLGLRGCRLGILHPEI IVMQVRAIIEAACRIKQEGQEIVPEIMVPLVSTVKELEITSEVIHKTARSVISEQGVGVKYLVGTMIEVPRAAITSDQIA QAADFFSYGTNDLTQMGLGMSRDDSGQFLPIYQQQEIFARNPFESIDIDGVGRLVSISAKEGRSVKPDLKLGICGEHGGD PATVEFCHKTGLNYVSCSPFRVPIARLAAARAALL >Mature_914_residues PNSHANEESAAAKKYIYSFAGGAAEGDASMKNLLGGKGANLAEMANIGLPVPPGFTLSTEVCAYYYDHQKTYPANLFETE IPAALKKVEDYLGKKFGDPENPLLVSVRSGARASMPGMMDTILNLGLNDKTVEGLARKSGNPRFAWDCYRRFVSMYGDVV LDLKPADKKQIDPFEEILEQKKQELGIHLDTELGVDDLKDLVGKYKKAILEKTGKTFPENPEEQLRGAISAVFNSWNNER AIVYRKLNHIPGWWGTACNVQAMVFGNMGEDCGTGVAFTRDAATGDNIFYGEFLMNAQGEDVVAGTRTPLKIEQLAQEKP AIYNQLEEIRSILEKHYRDMMDIEFTIENDKLFMLQCRVGKRTGLAAIKIAVDMYNEGLIDEKEVLRRIEPEQLNQLLRP VFDLKEKKAAIDSGRLLATGLNAGPGAATGRVYFNADDAMEANARGEKVILVRIETSPEDIKGMNAAEGILTERGGMTSH AALVARQMGKVCVAGCGTLRIDYKAGEMRVAGKDIVIKEGEYISIDGTTGEVIAGEVKTKNSEILEVLIDKTLDPADAPT FRIYNQLMQWADKYRKLNIRTNADQPDQAEIAITFGAEGIGLCRTEHMFFGGDRIDAMREMILADDIAGRKVALDKLLPY QRDDFYGLFKAMGSRPVTVRLLDPPLHEFLPHTDAEIDDLAGKIGKTSAEIKARIESLHEFNPMLGLRGCRLGILHPEII VMQVRAIIEAACRIKQEGQEIVPEIMVPLVSTVKELEITSEVIHKTARSVISEQGVGVKYLVGTMIEVPRAAITSDQIAQ AADFFSYGTNDLTQMGLGMSRDDSGQFLPIYQQQEIFARNPFESIDIDGVGRLVSISAKEGRSVKPDLKLGICGEHGGDP ATVEFCHKTGLNYVSCSPFRVPIARLAAARAALL
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1789193, Length=487, Percent_Identity=24.6406570841889, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1787994, Length=740, Percent_Identity=25.1351351351351, Blast_Score=102, Evalue=9e-23, Organism=Escherichia coli, GI1788756, Length=472, Percent_Identity=24.5762711864407, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI48994992, Length=368, Percent_Identity=25.5434782608696, Blast_Score=81, Evalue=3e-16, Organism=Escherichia coli, GI1788726, Length=466, Percent_Identity=23.3905579399142, Blast_Score=78, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 100666; Mature: 100535
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNSHANEESAAAKKYIYSFAGGAAEGDASMKNLLGGKGANLAEMANIGLPVPPGFTLST CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHH EVCAYYYDHQKTYPANLFETEIPAALKKVEDYLGKKFGDPENPLLVSVRSGARASMPGMM HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHH DTILNLGLNDKTVEGLARKSGNPRFAWDCYRRFVSMYGDVVLDLKPADKKQIDPFEEILE HHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHH QKKQELGIHLDTELGVDDLKDLVGKYKKAILEKTGKTFPENPEEQLRGAISAVFNSWNNE HHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC RAIVYRKLNHIPGWWGTACNVQAMVFGNMGEDCGTGVAFTRDAATGDNIFYGEFLMNAQG EEEEEEEHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEHEEECCCC EDVVAGTRTPLKIEQLAQEKPAIYNQLEEIRSILEKHYRDMMDIEFTIENDKLFMLQCRV CCEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEEEEEEEEC GKRTGLAAIKIAVDMYNEGLIDEKEVLRRIEPEQLNQLLRPVFDLKEKKAAIDSGRLLAT CCCCCCEEEEEEEEHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE GLNAGPGAATGRVYFNADDAMEANARGEKVILVRIETSPEDIKGMNAAEGILTERGGMTS CCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCHHHCCCCHHHHHHHCCCCCHH HAALVARQMGKVCVAGCGTLRIDYKAGEMRVAGKDIVIKEGEYISIDGTTGEVIAGEVKT HHHHHHHHHHHHEEECCCEEEEEEECCCEEECCCEEEEECCCEEEEECCCCCEEECCCCC KNSEILEVLIDKTLDPADAPTFRIYNQLMQWADKYRKLNIRTNADQPDQAEIAITFGAEG CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCCEEEEEECCCC IGLCRTEHMFFGGDRIDAMREMILADDIAGRKVALDKLLPYQRDDFYGLFKAMGSRPVTV CCEEEECCEEECCCHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCHHHHHHHHCCCCCEEE RLLDPPLHEFLPHTDAEIDDLAGKIGKTSAEIKARIESLHEFNPMLGLRGCRLGILHPEI EEECCCHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHH IVMQVRAIIEAACRIKQEGQEIVPEIMVPLVSTVKELEITSEVIHKTARSVISEQGVGVK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH YLVGTMIEVPRAAITSDQIAQAADFFSYGTNDLTQMGLGMSRDDSGQFLPIYQQQEIFAR HHHHHHHHCCHHHHCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCHHHHHC NPFESIDIDGVGRLVSISAKEGRSVKPDLKLGICGEHGGDPATVEFCHKTGLNYVSCSPF CCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEECCCC RVPIARLAAARAALL HHHHHHHHHHHHHCC >Mature Secondary Structure PNSHANEESAAAKKYIYSFAGGAAEGDASMKNLLGGKGANLAEMANIGLPVPPGFTLST CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHH EVCAYYYDHQKTYPANLFETEIPAALKKVEDYLGKKFGDPENPLLVSVRSGARASMPGMM HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHH DTILNLGLNDKTVEGLARKSGNPRFAWDCYRRFVSMYGDVVLDLKPADKKQIDPFEEILE HHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHH QKKQELGIHLDTELGVDDLKDLVGKYKKAILEKTGKTFPENPEEQLRGAISAVFNSWNNE HHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC RAIVYRKLNHIPGWWGTACNVQAMVFGNMGEDCGTGVAFTRDAATGDNIFYGEFLMNAQG EEEEEEEHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEHEEECCCC EDVVAGTRTPLKIEQLAQEKPAIYNQLEEIRSILEKHYRDMMDIEFTIENDKLFMLQCRV CCEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEEEEEEEEC GKRTGLAAIKIAVDMYNEGLIDEKEVLRRIEPEQLNQLLRPVFDLKEKKAAIDSGRLLAT CCCCCCEEEEEEEEHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE GLNAGPGAATGRVYFNADDAMEANARGEKVILVRIETSPEDIKGMNAAEGILTERGGMTS CCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCHHHCCCCHHHHHHHCCCCCHH HAALVARQMGKVCVAGCGTLRIDYKAGEMRVAGKDIVIKEGEYISIDGTTGEVIAGEVKT HHHHHHHHHHHHEEECCCEEEEEEECCCEEECCCEEEEECCCEEEEECCCCCEEECCCCC KNSEILEVLIDKTLDPADAPTFRIYNQLMQWADKYRKLNIRTNADQPDQAEIAITFGAEG CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCCEEEEEECCCC IGLCRTEHMFFGGDRIDAMREMILADDIAGRKVALDKLLPYQRDDFYGLFKAMGSRPVTV CCEEEECCEEECCCHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCHHHHHHHHCCCCCEEE RLLDPPLHEFLPHTDAEIDDLAGKIGKTSAEIKARIESLHEFNPMLGLRGCRLGILHPEI EEECCCHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHH IVMQVRAIIEAACRIKQEGQEIVPEIMVPLVSTVKELEITSEVIHKTARSVISEQGVGVK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH YLVGTMIEVPRAAITSDQIAQAADFFSYGTNDLTQMGLGMSRDDSGQFLPIYQQQEIFAR HHHHHHHHCCHHHHCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCHHHHHC NPFESIDIDGVGRLVSISAKEGRSVKPDLKLGICGEHGGDPATVEFCHKTGLNYVSCSPF CCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEECCCC RVPIARLAAARAALL HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2176881; 6257292; 11695893; 11468288; 8610096; 9753432 [H]