| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is 21674384
Identifier: 21674384
GI number: 21674384
Start: 1475789
End: 1477018
Strand: Reverse
Name: 21674384
Synonym: CT1566
Alternate gene names: NA
Gene position: 1477018-1475789 (Counterclockwise)
Preceding gene: 21674385
Following gene: 21674383
Centisome position: 68.54
GC content: 62.28
Gene sequence:
>1230_bases ATGCAGGTCATCATTGTTGAAGACGAAAAAACGCTCCGCTTCTCGCCGCTCGCCGACCTGAAGCCGGTGTACGATCTCGT GACCGGTTGCTTTTCGCTCCGTCAGCGTTTCGTCGAGGCCCTCGGCGCTCGGCAGAAGTTGACCTGGCACTTGCGCCGCC ATATCGCGCCGTGGTTCGCGGAGGCCAATCCCGGCTCGGTGGTCAACCGTGTTCTGGAGGATGAGGTGCTGCTCGTCAAC GGGCGACTCATCTGCGATGCGGCGGTGACGCAGTTCATCGACGCGCGCAAAATTGCGCCGGGCGAGGCGCTCATTCAGAA CGGCAATCTTTTGTTTTGCCGCACCACGGCGGAGCCGCTTCATGTTTTGGAAACGGTGTTTCCGGATACCATCGATGGCA TGGTGCTGGCCGGTGCGTTCTCGTGCGTCGAAGTTTCCGGGTTCCGTTTGATCGAGAATCTCTGGGATCCCGTGGCGATG CATCCGGCGATGATGCGCGAGGACGGCGCGGCTCTGGCGCTCGGGCGGATCGAGGGCGAGGTGCACCCGTCGGCGATTCT GGTCAATCCGTCCGCGATCACCGTCGAGAAAGGCGCGGAGGTCAAGGCTGGCGCGGTGCTCGATGCAAGCGACGGCTTTA TCTATATCGGCGCGGGTGCGGTGGTAGAGCCGGTGGCGCTGCTGATGGAGAACGTGTACATTGCGCCGGGTGCGAGGGTG AAGAGCGGCGCGCGGATTTACAGCAACGTCTGCATCGGCGGCGGCGCGAAGGCGGGCGGCGAGATCGAGGATTCGATCAT GGAGCCGTTTTCGAACAAGCAGCACGACGGTTTCCTCGGCCACTCCTACATTTCGAGTTGGTGCAACCTTGGCGCGGGCA CCGACACCTCCGACCTCAAGAACAACTACAGCCCGGTGAGCATCGAGACCGCGCACGGGAAAATGGCCACCGGCCAGCAG TTTCTCGGCCTCTTGATGGGCGAGCACTCGAAATGCTCCATCGGCACCCGCTTCAACACCGGCACGGTGGTCGGCATCTC GTCGAACATCTTCGGCAACGGAATGCCCGCGAAATACGTCCCCTCATTTAGCTGGGGCGACGGCAATCCCGGCACGGCAC GGTACGAAGCCGACAAAGCCGTCGAGACTGCGAGAAAGGTGATGGCGCGCCGCAAGGTTGAGATGAGTGCCGCGTATGAG GCGATGTTCAGAGCGGTGGCGGGGGAGTAG
Upstream 100 bases:
>100_bases GGATGGCGAGGTGATCGAGAAGGTTGGCGGCGCAATCGCCATCACCGCCGAGCCGCTCGCGGTCGAGATGCTTTACGAGC CATAACGAAAATCGATTCCC
Downstream 100 bases:
>100_bases GAGTAACTTTGCTTCCATCTTATAACTCTTGCTGGCATTTTTTGCCTTATTTCGATTAAATTATCTCAAGTTTCCCCTTA GTCAATCCGTAGCCCCCAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Sugar Phosphate Nucleotydyl Transferase; Sugar Phospate Transferase; Transferase Hexapeptide Repeat; Nucleotidyl Transferase; Transferase Hexapeptide Repeat Containing Protein; Sugar-1-Phosphate Guanyl Transferase; Hexapeptide Transferase Family Protein; Hexapeptide Repeat-Containing Protein
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MQVIIVEDEKTLRFSPLADLKPVYDLVTGCFSLRQRFVEALGARQKLTWHLRRHIAPWFAEANPGSVVNRVLEDEVLLVN GRLICDAAVTQFIDARKIAPGEALIQNGNLLFCRTTAEPLHVLETVFPDTIDGMVLAGAFSCVEVSGFRLIENLWDPVAM HPAMMREDGAALALGRIEGEVHPSAILVNPSAITVEKGAEVKAGAVLDASDGFIYIGAGAVVEPVALLMENVYIAPGARV KSGARIYSNVCIGGGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNLGAGTDTSDLKNNYSPVSIETAHGKMATGQQ FLGLLMGEHSKCSIGTRFNTGTVVGISSNIFGNGMPAKYVPSFSWGDGNPGTARYEADKAVETARKVMARRKVEMSAAYE AMFRAVAGE
Sequences:
>Translated_409_residues MQVIIVEDEKTLRFSPLADLKPVYDLVTGCFSLRQRFVEALGARQKLTWHLRRHIAPWFAEANPGSVVNRVLEDEVLLVN GRLICDAAVTQFIDARKIAPGEALIQNGNLLFCRTTAEPLHVLETVFPDTIDGMVLAGAFSCVEVSGFRLIENLWDPVAM HPAMMREDGAALALGRIEGEVHPSAILVNPSAITVEKGAEVKAGAVLDASDGFIYIGAGAVVEPVALLMENVYIAPGARV KSGARIYSNVCIGGGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNLGAGTDTSDLKNNYSPVSIETAHGKMATGQQ FLGLLMGEHSKCSIGTRFNTGTVVGISSNIFGNGMPAKYVPSFSWGDGNPGTARYEADKAVETARKVMARRKVEMSAAYE AMFRAVAGE >Mature_409_residues MQVIIVEDEKTLRFSPLADLKPVYDLVTGCFSLRQRFVEALGARQKLTWHLRRHIAPWFAEANPGSVVNRVLEDEVLLVN GRLICDAAVTQFIDARKIAPGEALIQNGNLLFCRTTAEPLHVLETVFPDTIDGMVLAGAFSCVEVSGFRLIENLWDPVAM HPAMMREDGAALALGRIEGEVHPSAILVNPSAITVEKGAEVKAGAVLDASDGFIYIGAGAVVEPVALLMENVYIAPGARV KSGARIYSNVCIGGGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNLGAGTDTSDLKNNYSPVSIETAHGKMATGQQ FLGLLMGEHSKCSIGTRFNTGTVVGISSNIFGNGMPAKYVPSFSWGDGNPGTARYEADKAVETARKVMARRKVEMSAAYE AMFRAVAGE
Specific function: Unknown
COG id: COG1208
COG function: function code MJ; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43895; Mature: 43895
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVIIVEDEKTLRFSPLADLKPVYDLVTGCFSLRQRFVEALGARQKLTWHLRRHIAPWFA CEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHC EANPGSVVNRVLEDEVLLVNGRLICDAAVTQFIDARKIAPGEALIQNGNLLFCRTTAEPL CCCCHHHHHHHHCCCEEEECCEEEEHHHHHHHHHHHCCCCCHHHEECCCEEEEECCCCHH HVLETVFPDTIDGMVLAGAFSCVEVSGFRLIENLWDPVAMHPAMMREDGAALALGRIEGE HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHHHCCCCEEEEEECCCC VHPSAILVNPSAITVEKGAEVKAGAVLDASDGFIYIGAGAVVEPVALLMENVYIAPGARV CCCCEEEECCCEEEEECCCCEECCEEEECCCCEEEEECCHHHHHHHHHHHCEEECCCCCC KSGARIYSNVCIGGGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNLGAGTDTSDLK CCCCCEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHH NNYSPVSIETAHGKMATGQQFLGLLMGEHSKCSIGTRFNTGTVVGISSNIFGNGMPAKYV CCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCC PSFSWGDGNPGTARYEADKAVETARKVMARRKVEMSAAYEAMFRAVAGE CCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQVIIVEDEKTLRFSPLADLKPVYDLVTGCFSLRQRFVEALGARQKLTWHLRRHIAPWFA CEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHC EANPGSVVNRVLEDEVLLVNGRLICDAAVTQFIDARKIAPGEALIQNGNLLFCRTTAEPL CCCCHHHHHHHHCCCEEEECCEEEEHHHHHHHHHHHCCCCCHHHEECCCEEEEECCCCHH HVLETVFPDTIDGMVLAGAFSCVEVSGFRLIENLWDPVAMHPAMMREDGAALALGRIEGE HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHHHCCCCEEEEEECCCC VHPSAILVNPSAITVEKGAEVKAGAVLDASDGFIYIGAGAVVEPVALLMENVYIAPGARV CCCCEEEECCCEEEEECCCCEECCEEEECCCCEEEEECCHHHHHHHHHHHCEEECCCCCC KSGARIYSNVCIGGGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNLGAGTDTSDLK CCCCCEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHH NNYSPVSIETAHGKMATGQQFLGLLMGEHSKCSIGTRFNTGTVVGISSNIFGNGMPAKYV CCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCC PSFSWGDGNPGTARYEADKAVETARKVMARRKVEMSAAYEAMFRAVAGE CCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA