| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is metG
Identifier: 21673797
GI number: 21673797
Start: 913219
End: 915330
Strand: Direct
Name: metG
Synonym: CT0969
Alternate gene names: 21673797
Gene position: 913219-915330 (Clockwise)
Preceding gene: 21673796
Following gene: 21673798
Centisome position: 42.38
GC content: 59.14
Gene sequence:
>2112_bases ATGACTCATATACCCAAAAGAACTCTCGTTACCACCGCTCTTCCATATGCCAACGGCCCGGTGCACCTCGGCCACCTCGC CGGGGTCTATCTGCCCGCCGATATTTATGTTCGCTACAAGCGCCTCTGCGGCCACGACGTGATCCATATCGGTGGCTCGG ATGAGCACGGCGTGCCGATTACCATTACCGCCGACAAGGAGGGCATTTCGCCGCAGGAAGTGGTGGATCGCTACCACACA ATGAATGCTGAGGCATTTGCGAAGTGCGGCATTTCGTTTGATTACTACGGGCGCACCAGTGGGCCGGTTCATCACCAGAC CGCTCGTGAGTTTTTCTTGGAAATCGAGAAAAAGGGGATTTTTGTCAAGAAAACCGAAAAGCAGTTCTTCGATCCGAAGG CGGGGCGCTTCCTCTCCGACCGCTACATCACCGGCACCTGCCCGGTCTGCAAAACGCCCGGCGCGAACGGCGACCAGTGC GAGCAGTGCGGCACGCACCTCAGCCCGACCGAGCTGATCGATCCGAAGAGCAAGCTCTCCGACGCTACGCCGGAGCTGCG CGAAACCCTGCACTGGTACTTCCCGCTTGGGCGCTACCAGAAGCAGCTCGAAGCCTTTGTTGAACGGCACACCGGTGACT GGCGCTCTAACGTTGTCAACTACTCACGCACGTGGCTCAACCAGGGCCTCGCCGACCGTGCGATCACCCGCGATCTCGCT TGGGGCATCTCGCTGCCGCTCGACTCCGAAGAGGCGAAAGGCAAGGTGCTTTATGTCTGGTTCGACGCCGTGCTTGGCTA CATTTCATTTACGAAAGAGTGGGCTGAAAAGCAGGGCGACGCCGAACTCTGGCGGCGCTACTGGCAGGATCCGGAGACGC GCATCATCAACTTCATCGGCAAGGATAACGTCGTGTTCCACACGCTGATGTTCCCGGCGATTCTGATGGCCTGGAACGAG GGGCGCAGCGAGGGGCGCTACGAGCTGGCCGACAATGTTCCGGCCTCCGAGTTCATGAACTTCGAGGGGCGCAAGTTCTC AAAGTCGCGCAACTATGCAGTTTATCTCGGCGAGTTTCTCGAACGCTTCCCGGCGGACACGTTGCGCTACAGCATCGCGA TGAACTACCCGGAGAACAAGGATACCGACTTCAGCTGGAGTGACTTCCAGAACCGCACCAACGGCGAGCTGGCCGACACG CTCGGCAACTTCATCAAGCGTTCGATCGACTTTACCAACTCGCGCTTCGGCGGCCAGGTGCCAGCGGACATAGACCTTGA AGCGTGGGACAGCCTCGGCATCGACTGGCTGGCGAGTTTCGGCAAACTCGAAGCGGCCTACGACGGCTTCCACTTCCGTG AAGCAACCGCACAGACGATGGAGATCGCGCGTTTCGCCAATCGCTTTCTCACCGAGAGCGAGCCGTGGAAAGTCATTAAG GTCGATCCGGAAGCGGCGGGGCGCACGATGGCCGTGTCGCTGAATCTTTGCCACACGCTCGCGCTGCTCTTCTGGCCGAT TGTGCCCGAAACCGCCAACCGCATTTGGAAGATGCTCGGTTTCGAGGGCACGATTGACGAACTCGTTGAACCCGGCAACC CTGTCTGGCGTCAGGCGCTCGAACCGGGGCTGAAGAAGGGACACAAGCTGCTTGGTTCGTCCGAAATTCTTTTCTCGAAG ATCGAGGACAAGGACATCGAGCCAGAGATGAAGAAGATCGAGGCGCTGCTGGCCGAGGCGGAGCAGCGTGAAGCCGCCAA GCAGCCCGTGCCGATGACCTTTAAGCCTGAGATCACCTTCGACGACTTCCAGAAGATCGATCTGCGTGTGGCAAAAGTGG TCGCCTGCGAGCCGGTCAAAAAGGCCAACAAACTGCTCAAGCTGCAATTGCAGGTCGGCTCGGAGCAGCGCCAGGTGCTT TCGGGCATCGCGCAGTACTTTACGCCCGAGCAGATGGTGGGCAAGAATGTCGTGCTGGTGGCCAATCTCGCTGACCGCAC CATGCGGGGCGAGCTGTCGCAGGGCATGATCCTCACTGTCGAGGGCGCCGATGGCCGCCTTTTTCTGCTCGAACCGCAGG GCGAAGGAATAAATGGGAACTCTGTCAGTTAA
Upstream 100 bases:
>100_bases CCGGAAAGCGTCAGGGCGGACAGGCCTGAAACACCATTTCATCACCCGGCAATCCGCCGGGTGACGTGATTTTATCATCA TCGAACGACTTGTGTTACCA
Downstream 100 bases:
>100_bases CCATTTGTTTTTTACAATGAAAGTCGTACATTAAGCAGCTTTTACATCGTGGGGTGGAGCAATTGGTAGCTCGTCGGGCT CATAACCCGAAGGTTGCAGG
Product: methionyl-tRNA synthetase
Products: NA
Alternate protein names: Methionine--tRNA ligase; MetRS
Number of amino acids: Translated: 703; Mature: 702
Protein sequence:
>703_residues MTHIPKRTLVTTALPYANGPVHLGHLAGVYLPADIYVRYKRLCGHDVIHIGGSDEHGVPITITADKEGISPQEVVDRYHT MNAEAFAKCGISFDYYGRTSGPVHHQTAREFFLEIEKKGIFVKKTEKQFFDPKAGRFLSDRYITGTCPVCKTPGANGDQC EQCGTHLSPTELIDPKSKLSDATPELRETLHWYFPLGRYQKQLEAFVERHTGDWRSNVVNYSRTWLNQGLADRAITRDLA WGISLPLDSEEAKGKVLYVWFDAVLGYISFTKEWAEKQGDAELWRRYWQDPETRIINFIGKDNVVFHTLMFPAILMAWNE GRSEGRYELADNVPASEFMNFEGRKFSKSRNYAVYLGEFLERFPADTLRYSIAMNYPENKDTDFSWSDFQNRTNGELADT LGNFIKRSIDFTNSRFGGQVPADIDLEAWDSLGIDWLASFGKLEAAYDGFHFREATAQTMEIARFANRFLTESEPWKVIK VDPEAAGRTMAVSLNLCHTLALLFWPIVPETANRIWKMLGFEGTIDELVEPGNPVWRQALEPGLKKGHKLLGSSEILFSK IEDKDIEPEMKKIEALLAEAEQREAAKQPVPMTFKPEITFDDFQKIDLRVAKVVACEPVKKANKLLKLQLQVGSEQRQVL SGIAQYFTPEQMVGKNVVLVANLADRTMRGELSQGMILTVEGADGRLFLLEPQGEGINGNSVS
Sequences:
>Translated_703_residues MTHIPKRTLVTTALPYANGPVHLGHLAGVYLPADIYVRYKRLCGHDVIHIGGSDEHGVPITITADKEGISPQEVVDRYHT MNAEAFAKCGISFDYYGRTSGPVHHQTAREFFLEIEKKGIFVKKTEKQFFDPKAGRFLSDRYITGTCPVCKTPGANGDQC EQCGTHLSPTELIDPKSKLSDATPELRETLHWYFPLGRYQKQLEAFVERHTGDWRSNVVNYSRTWLNQGLADRAITRDLA WGISLPLDSEEAKGKVLYVWFDAVLGYISFTKEWAEKQGDAELWRRYWQDPETRIINFIGKDNVVFHTLMFPAILMAWNE GRSEGRYELADNVPASEFMNFEGRKFSKSRNYAVYLGEFLERFPADTLRYSIAMNYPENKDTDFSWSDFQNRTNGELADT LGNFIKRSIDFTNSRFGGQVPADIDLEAWDSLGIDWLASFGKLEAAYDGFHFREATAQTMEIARFANRFLTESEPWKVIK VDPEAAGRTMAVSLNLCHTLALLFWPIVPETANRIWKMLGFEGTIDELVEPGNPVWRQALEPGLKKGHKLLGSSEILFSK IEDKDIEPEMKKIEALLAEAEQREAAKQPVPMTFKPEITFDDFQKIDLRVAKVVACEPVKKANKLLKLQLQVGSEQRQVL SGIAQYFTPEQMVGKNVVLVANLADRTMRGELSQGMILTVEGADGRLFLLEPQGEGINGNSVS >Mature_702_residues THIPKRTLVTTALPYANGPVHLGHLAGVYLPADIYVRYKRLCGHDVIHIGGSDEHGVPITITADKEGISPQEVVDRYHTM NAEAFAKCGISFDYYGRTSGPVHHQTAREFFLEIEKKGIFVKKTEKQFFDPKAGRFLSDRYITGTCPVCKTPGANGDQCE QCGTHLSPTELIDPKSKLSDATPELRETLHWYFPLGRYQKQLEAFVERHTGDWRSNVVNYSRTWLNQGLADRAITRDLAW GISLPLDSEEAKGKVLYVWFDAVLGYISFTKEWAEKQGDAELWRRYWQDPETRIINFIGKDNVVFHTLMFPAILMAWNEG RSEGRYELADNVPASEFMNFEGRKFSKSRNYAVYLGEFLERFPADTLRYSIAMNYPENKDTDFSWSDFQNRTNGELADTL GNFIKRSIDFTNSRFGGQVPADIDLEAWDSLGIDWLASFGKLEAAYDGFHFREATAQTMEIARFANRFLTESEPWKVIKV DPEAAGRTMAVSLNLCHTLALLFWPIVPETANRIWKMLGFEGTIDELVEPGNPVWRQALEPGLKKGHKLLGSSEILFSKI EDKDIEPEMKKIEALLAEAEQREAAKQPVPMTFKPEITFDDFQKIDLRVAKVVACEPVKKANKLLKLQLQVGSEQRQVLS GIAQYFTPEQMVGKNVVLVANLADRTMRGELSQGMILTVEGADGRLFLLEPQGEGINGNSVS
Specific function: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
COG id: COG0143
COG function: function code J; Methionyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain
Homologues:
Organism=Homo sapiens, GI14043022, Length=644, Percent_Identity=32.2981366459627, Blast_Score=355, Evalue=1e-97, Organism=Homo sapiens, GI24308436, Length=552, Percent_Identity=25.9057971014493, Blast_Score=136, Evalue=5e-32, Organism=Escherichia coli, GI1788432, Length=714, Percent_Identity=34.3137254901961, Blast_Score=400, Evalue=1e-112, Organism=Escherichia coli, GI1789455, Length=97, Percent_Identity=35.0515463917526, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17540794, Length=572, Percent_Identity=34.6153846153846, Blast_Score=377, Evalue=1e-104, Organism=Caenorhabditis elegans, GI212645096, Length=534, Percent_Identity=23.9700374531835, Blast_Score=118, Evalue=1e-26, Organism=Caenorhabditis elegans, GI71992781, Length=361, Percent_Identity=24.9307479224377, Blast_Score=79, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6321704, Length=570, Percent_Identity=33.3333333333333, Blast_Score=346, Evalue=6e-96, Organism=Saccharomyces cerevisiae, GI6321610, Length=551, Percent_Identity=21.9600725952813, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI24655311, Length=575, Percent_Identity=33.5652173913043, Blast_Score=342, Evalue=6e-94, Organism=Drosophila melanogaster, GI21358483, Length=588, Percent_Identity=23.8095238095238, Blast_Score=119, Evalue=1e-26, Organism=Drosophila melanogaster, GI21355409, Length=222, Percent_Identity=26.1261261261261, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: 871 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): SYM_CHLTE (P59077)
Other databases:
- EMBL: AE006470 - RefSeq: NP_661862.1 - ProteinModelPortal: P59077 - SMR: P59077 - GeneID: 1007067 - GenomeReviews: AE006470_GR - KEGG: cte:CT0969 - NMPDR: fig|194439.1.peg.956 - TIGR: CT0969 - HOGENOM: HBG721667 - OMA: SAYQPEQ - ProtClustDB: PRK00133 - BioCyc: CTEP194439:CT_0969-MONOMER - BRENDA: 6.1.1.10 - GO: GO:0005737 - HAMAP: MF_00098 - InterPro: IPR001412 - InterPro: IPR015413 - InterPro: IPR004495 - InterPro: IPR014758 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR014729 - InterPro: IPR002547 - InterPro: IPR009080 - InterPro: IPR013155 - Gene3D: G3DSA:2.40.50.140 - Gene3D: G3DSA:3.40.50.620 - PRINTS: PR01041 - TIGRFAMs: TIGR00398 - TIGRFAMs: TIGR00399
Pfam domain/function: PF08264 Anticodon_1; PF09334 tRNA-synt_1g; PF01588 tRNA_bind; SSF50249 Nucleic_acid_OB; SSF47323 tRNAsyn_1a_bind
EC number: =6.1.1.10
Molecular weight: Translated: 79554; Mature: 79423
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: PS00178 AA_TRNA_LIGASE_I; PS50886 TRBD
Important sites: BINDING 348-348
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHIPKRTLVTTALPYANGPVHLGHLAGVYLPADIYVRYKRLCGHDVIHIGGSDEHGVPI CCCCCCCHHHHEECCCCCCCEEEHHHCCEEECHHHHHHHHHHCCCCEEEECCCCCCCEEE TITADKEGISPQEVVDRYHTMNAEAFAKCGISFDYYGRTSGPVHHQTAREFFLEIEKKGI EEECCCCCCCHHHHHHHHHHCCHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCE FVKKTEKQFFDPKAGRFLSDRYITGTCPVCKTPGANGDQCEQCGTHLSPTELIDPKSKLS EEEECHHHHCCCCCCCEECCCEEECCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCHHHHC DATPELRETLHWYFPLGRYQKQLEAFVERHTGDWRSNVVNYSRTWLNQGLADRAITRDLA CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH WGISLPLDSEEAKGKVLYVWFDAVLGYISFTKEWAEKQGDAELWRRYWQDPETRIINFIG CCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCC KDNVVFHTLMFPAILMAWNEGRSEGRYELADNVPASEFMNFEGRKFSKSRNYAVYLGEFL CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCCEEEEHHHHH ERFPADTLRYSIAMNYPENKDTDFSWSDFQNRTNGELADTLGNFIKRSIDFTNSRFGGQV HHCCCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC PADIDLEAWDSLGIDWLASFGKLEAAYDGFHFREATAQTMEIARFANRFLTESEPWKVIK CCCCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE VDPEAAGRTMAVSLNLCHTLALLFWPIVPETANRIWKMLGFEGTIDELVEPGNPVWRQAL ECCCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHH EPGLKKGHKLLGSSEILFSKIEDKDIEPEMKKIEALLAEAEQREAAKQPVPMTFKPEITF HHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCH DDFQKIDLRVAKVVACEPVKKANKLLKLQLQVGSEQRQVLSGIAQYFTPEQMVGKNVVLV HHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECCCHHHHHHHHHHHHCCCHHHHCCCEEEE ANLADRTMRGELSQGMILTVEGADGRLFLLEPQGEGINGNSVS EECHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure THIPKRTLVTTALPYANGPVHLGHLAGVYLPADIYVRYKRLCGHDVIHIGGSDEHGVPI CCCCCCHHHHEECCCCCCCEEEHHHCCEEECHHHHHHHHHHCCCCEEEECCCCCCCEEE TITADKEGISPQEVVDRYHTMNAEAFAKCGISFDYYGRTSGPVHHQTAREFFLEIEKKGI EEECCCCCCCHHHHHHHHHHCCHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCE FVKKTEKQFFDPKAGRFLSDRYITGTCPVCKTPGANGDQCEQCGTHLSPTELIDPKSKLS EEEECHHHHCCCCCCCEECCCEEECCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCHHHHC DATPELRETLHWYFPLGRYQKQLEAFVERHTGDWRSNVVNYSRTWLNQGLADRAITRDLA CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH WGISLPLDSEEAKGKVLYVWFDAVLGYISFTKEWAEKQGDAELWRRYWQDPETRIINFIG CCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCC KDNVVFHTLMFPAILMAWNEGRSEGRYELADNVPASEFMNFEGRKFSKSRNYAVYLGEFL CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCCEEEEHHHHH ERFPADTLRYSIAMNYPENKDTDFSWSDFQNRTNGELADTLGNFIKRSIDFTNSRFGGQV HHCCCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC PADIDLEAWDSLGIDWLASFGKLEAAYDGFHFREATAQTMEIARFANRFLTESEPWKVIK CCCCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE VDPEAAGRTMAVSLNLCHTLALLFWPIVPETANRIWKMLGFEGTIDELVEPGNPVWRQAL ECCCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHH EPGLKKGHKLLGSSEILFSKIEDKDIEPEMKKIEALLAEAEQREAAKQPVPMTFKPEITF HHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCH DDFQKIDLRVAKVVACEPVKKANKLLKLQLQVGSEQRQVLSGIAQYFTPEQMVGKNVVLV HHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECCCHHHHHHHHHHHHCCCHHHHCCCEEEE ANLADRTMRGELSQGMILTVEGADGRLFLLEPQGEGINGNSVS EECHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12093901