| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is mod [H]
Identifier: 21673736
GI number: 21673736
Start: 858864
End: 860873
Strand: Direct
Name: mod [H]
Synonym: CT0908
Alternate gene names: 21673736
Gene position: 858864-860873 (Clockwise)
Preceding gene: 21673735
Following gene: 21673737
Centisome position: 39.86
GC content: 58.06
Gene sequence:
>2010_bases ATGAAACAACTGACCGCCAACGACCCCGAGACCCGAAGCCACGACCTTGTCGCCGAGAACATCGCCCGGCTCAAGGCCCT GTTCCCGGAACTGGTGACCGAAGGCCCGGACGGCGCCGCCGTGAACATGGACGTGCTCAAGCAATTGGTGGGTGACAAAA CCGTCACCGACTGTGATGAGAAGTACGGCCTCAACTGGCACGGCAAGCGCCGCGCCCGGCAGCTCGCGCTCACGCCCTCC ACCGGCACGCTGCGCCCCTGCCCTGAAGACAGCGTGGACTGGGACACCACGCAGAACCTGATGATCGAGGGCGACAACCT GGAGGTGCTGAAGCTGCTGCAAAAGAGCTACGCGGGGAAGATAAAGCTCATCTACATCGACCCGCCGTACAACACGGGCA AGGACTTCGTCTATCCCGACGACTTCAAGGACAACATCAGGAACTATCTGGAGCTGACCGGGCAGGTCGAAGGCGGGCGG AAGATCAGCAGCAACACCGAAGCCAGCGGGCGGTTTCACACGGACTGGCTGAACATGATGTATCCGAGGTTGAAGATTGC TCGTCAACTCCTTTCGCCCACTGGTGTGATCGCTGTACATATTGACGAACACGAGTTAGAAGCCCTTGTGATAGTACTCC GCGATTTGTTTGGCGAAGAAAATGAACTCGGAGTTACGATATGGGATAAACGCAATCCGAAGGGTGATTCGCGAGGAATC GCCTACCAACATGAATCACTTGTGCTCTTTGCGCGAGATGCAGAGGAATTGTTTGCACGTTCGCCAGTTCGTCGGGCGAA ACGCAACGCCGAGCGGATGCTAAACGCAGCATCGCGATTTGTTACGGAATGCGGAAGCATCGCCGAAGCAAGAGCAGCTT ATCGTAGTTGGGTCAAATCTCAGTCCACACTCTCTGGCGGTGAGTCGATGTACGACAAACTGAGCGAGACAGGACGTGTC TATAGGTTGGTATCGATGGCCTGGCCAAACAAGAAGCGTGCGCCCGCTGACTATTTCGTGCCCCTGAAGCACCCTATCAC TGGCAAGGATTGCCCCATCCCAGAGCGGGGTTGGCGCAATCCTCCTGCAACAATGAAAAAACTTTTGGAAGATGGGCTTA TCGAGTTCGGTCCAGACGAGATTATGCAGCCACAGAGAATCTATTTTTTAGACGAGAACATGTATGAAAATGTCCCATCG ATCGTGCCATTCGGTGGGTCAGACGACGAACTCTTGAAGGAGCTTTCTGTCCCTTTTGAGCAGCCGAAGCCTGTCGACTT TTCCGTGCAAGTCATTAGTTGGTGTAGTTCTAAAGATGAGATTGTAATGGACTTCTTCGCCGGTTCCGGCACCACCGGCC ACGCGGTCATGGCGCAGAACGCCGCCGACGGCGGCAATCGCCGCTACATCCTCGTCCAGCTTCCCGAACCGCTCGACCCG GAGAACAAGGACCAGAAAGTCGCCGCCGAGTTCTGCGACAAGCTCGGCAAACCCCGCACCATCGCCGAGCTGACCAAGGA ACGCCTGCGTCGCGCTGCGAAGAAAATCAAGGAAGAGAATCCGCTCTTCGCCGGTGATCTCGGCTTCCGTGTCTTCAAGC TCGACTCCAGCAACATCCGCGCGTGGGAGCCGGACCGTGACAATCTGGACCAGACGCTGTTCGACCATGTGGAGCACCTG AAGGAAGGTCGCACCGAGCAGGACATCCTTTACGAGCTGCTGCTCAAACTCGGCCTCGACCTGTGCGTGCCGATCGAGAC CCGCACCATCGCCGGCAAGGCTGTGCACAGCATCGGTGGCGGCGTGCTGCTGGCCTGCCTCGCCACGCGGATCACTCGCG AGGAGGTGGAGCCGCTGGCGCAGGGTATCGTCGCCTGGCATCAGGCCCTCGCCCCGGCCGGCGACACTACCTGCGTTTTC CGAGACAGCGCCTTCGCCGACGACGTGGCCAAGACCAACCTCGCGGCCATCCTCGAGCAACACGGCATCGCCAACGTAAG GAGTTTATGA
Upstream 100 bases:
>100_bases AGCGGCAGGTGCCGCGGCAGGTGGAACTGAACCTGGAACTCAAGCGCGCCGAGGCCGCCCGCGCCGCCGCGCTCACACGA CTATGAAGAACGAGGACAAC
Downstream 100 bases:
>100_bases TGAATCAATTCTTTGAACCTCCGCGTGTAGAGGCTCTGCATGTGCAGAATTACCGCGCCCTGCAAAACGTGCGCCTGGAT TCCATCACGCCGCTGACCGT
Product: type III restriction system methylase
Products: NA
Alternate protein names: M.EcoP15I; EcoP15I methyltransferase [H]
Number of amino acids: Translated: 669; Mature: 669
Protein sequence:
>669_residues MKQLTANDPETRSHDLVAENIARLKALFPELVTEGPDGAAVNMDVLKQLVGDKTVTDCDEKYGLNWHGKRRARQLALTPS TGTLRPCPEDSVDWDTTQNLMIEGDNLEVLKLLQKSYAGKIKLIYIDPPYNTGKDFVYPDDFKDNIRNYLELTGQVEGGR KISSNTEASGRFHTDWLNMMYPRLKIARQLLSPTGVIAVHIDEHELEALVIVLRDLFGEENELGVTIWDKRNPKGDSRGI AYQHESLVLFARDAEELFARSPVRRAKRNAERMLNAASRFVTECGSIAEARAAYRSWVKSQSTLSGGESMYDKLSETGRV YRLVSMAWPNKKRAPADYFVPLKHPITGKDCPIPERGWRNPPATMKKLLEDGLIEFGPDEIMQPQRIYFLDENMYENVPS IVPFGGSDDELLKELSVPFEQPKPVDFSVQVISWCSSKDEIVMDFFAGSGTTGHAVMAQNAADGGNRRYILVQLPEPLDP ENKDQKVAAEFCDKLGKPRTIAELTKERLRRAAKKIKEENPLFAGDLGFRVFKLDSSNIRAWEPDRDNLDQTLFDHVEHL KEGRTEQDILYELLLKLGLDLCVPIETRTIAGKAVHSIGGGVLLACLATRITREEVEPLAQGIVAWHQALAPAGDTTCVF RDSAFADDVAKTNLAAILEQHGIANVRSL
Sequences:
>Translated_669_residues MKQLTANDPETRSHDLVAENIARLKALFPELVTEGPDGAAVNMDVLKQLVGDKTVTDCDEKYGLNWHGKRRARQLALTPS TGTLRPCPEDSVDWDTTQNLMIEGDNLEVLKLLQKSYAGKIKLIYIDPPYNTGKDFVYPDDFKDNIRNYLELTGQVEGGR KISSNTEASGRFHTDWLNMMYPRLKIARQLLSPTGVIAVHIDEHELEALVIVLRDLFGEENELGVTIWDKRNPKGDSRGI AYQHESLVLFARDAEELFARSPVRRAKRNAERMLNAASRFVTECGSIAEARAAYRSWVKSQSTLSGGESMYDKLSETGRV YRLVSMAWPNKKRAPADYFVPLKHPITGKDCPIPERGWRNPPATMKKLLEDGLIEFGPDEIMQPQRIYFLDENMYENVPS IVPFGGSDDELLKELSVPFEQPKPVDFSVQVISWCSSKDEIVMDFFAGSGTTGHAVMAQNAADGGNRRYILVQLPEPLDP ENKDQKVAAEFCDKLGKPRTIAELTKERLRRAAKKIKEENPLFAGDLGFRVFKLDSSNIRAWEPDRDNLDQTLFDHVEHL KEGRTEQDILYELLLKLGLDLCVPIETRTIAGKAVHSIGGGVLLACLATRITREEVEPLAQGIVAWHQALAPAGDTTCVF RDSAFADDVAKTNLAAILEQHGIANVRSL >Mature_669_residues MKQLTANDPETRSHDLVAENIARLKALFPELVTEGPDGAAVNMDVLKQLVGDKTVTDCDEKYGLNWHGKRRARQLALTPS TGTLRPCPEDSVDWDTTQNLMIEGDNLEVLKLLQKSYAGKIKLIYIDPPYNTGKDFVYPDDFKDNIRNYLELTGQVEGGR KISSNTEASGRFHTDWLNMMYPRLKIARQLLSPTGVIAVHIDEHELEALVIVLRDLFGEENELGVTIWDKRNPKGDSRGI AYQHESLVLFARDAEELFARSPVRRAKRNAERMLNAASRFVTECGSIAEARAAYRSWVKSQSTLSGGESMYDKLSETGRV YRLVSMAWPNKKRAPADYFVPLKHPITGKDCPIPERGWRNPPATMKKLLEDGLIEFGPDEIMQPQRIYFLDENMYENVPS IVPFGGSDDELLKELSVPFEQPKPVDFSVQVISWCSSKDEIVMDFFAGSGTTGHAVMAQNAADGGNRRYILVQLPEPLDP ENKDQKVAAEFCDKLGKPRTIAELTKERLRRAAKKIKEENPLFAGDLGFRVFKLDSSNIRAWEPDRDNLDQTLFDHVEHL KEGRTEQDILYELLLKLGLDLCVPIETRTIAGKAVHSIGGGVLLACLATRITREEVEPLAQGIVAWHQALAPAGDTTCVF RDSAFADDVAKTNLAAILEQHGIANVRSL
Specific function: Binds the system-specific DNA recognition site 5'- CAGCAC-3'. Necessary for both restriction and methylation (of one of the two A's) [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 74930; Mature: 74930
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQLTANDPETRSHDLVAENIARLKALFPELVTEGPDGAAVNMDVLKQLVGDKTVTDCDE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHCCCCCCCCHH KYGLNWHGKRRARQLALTPSTGTLRPCPEDSVDWDTTQNLMIEGDNLEVLKLLQKSYAGK HCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCC IKLIYIDPPYNTGKDFVYPDDFKDNIRNYLELTGQVEGGRKISSNTEASGRFHTDWLNMM EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEHHHHHHH YPRLKIARQLLSPTGVIAVHIDEHELEALVIVLRDLFGEENELGVTIWDKRNPKGDSRGI HHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCE AYQHESLVLFARDAEELFARSPVRRAKRNAERMLNAASRFVTECGSIAEARAAYRSWVKS EEECCEEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSTLSGGESMYDKLSETGRVYRLVSMAWPNKKRAPADYFVPLKHPITGKDCPIPERGWRN HHHCCCCHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC PPATMKKLLEDGLIEFGPDEIMQPQRIYFLDENMYENVPSIVPFGGSDDELLKELSVPFE CCHHHHHHHHCCCCCCCHHHHCCCCEEEEECCHHHHCCCCEECCCCCHHHHHHHHCCCCC QPKPVDFSVQVISWCSSKDEIVMDFFAGSGTTGHAVMAQNAADGGNRRYILVQLPEPLDP CCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC ENKDQKVAAEFCDKLGKPRTIAELTKERLRRAAKKIKEENPLFAGDLGFRVFKLDSSNIR CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCE AWEPDRDNLDQTLFDHVEHLKEGRTEQDILYELLLKLGLDLCVPIETRTIAGKAVHSIGG ECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCH GVLLACLATRITREEVEPLAQGIVAWHQALAPAGDTTCVFRDSAFADDVAKTNLAAILEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHH HGIANVRSL CCCCHHCCC >Mature Secondary Structure MKQLTANDPETRSHDLVAENIARLKALFPELVTEGPDGAAVNMDVLKQLVGDKTVTDCDE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHCCCCCCCCHH KYGLNWHGKRRARQLALTPSTGTLRPCPEDSVDWDTTQNLMIEGDNLEVLKLLQKSYAGK HCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCC IKLIYIDPPYNTGKDFVYPDDFKDNIRNYLELTGQVEGGRKISSNTEASGRFHTDWLNMM EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEHHHHHHH YPRLKIARQLLSPTGVIAVHIDEHELEALVIVLRDLFGEENELGVTIWDKRNPKGDSRGI HHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCE AYQHESLVLFARDAEELFARSPVRRAKRNAERMLNAASRFVTECGSIAEARAAYRSWVKS EEECCEEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSTLSGGESMYDKLSETGRVYRLVSMAWPNKKRAPADYFVPLKHPITGKDCPIPERGWRN HHHCCCCHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC PPATMKKLLEDGLIEFGPDEIMQPQRIYFLDENMYENVPSIVPFGGSDDELLKELSVPFE CCHHHHHHHHCCCCCCCHHHHCCCCEEEEECCHHHHCCCCEECCCCCHHHHHHHHCCCCC QPKPVDFSVQVISWCSSKDEIVMDFFAGSGTTGHAVMAQNAADGGNRRYILVQLPEPLDP CCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC ENKDQKVAAEFCDKLGKPRTIAELTKERLRRAAKKIKEENPLFAGDLGFRVFKLDSSNIR CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCE AWEPDRDNLDQTLFDHVEHLKEGRTEQDILYELLLKLGLDLCVPIETRTIAGKAVHSIGG ECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCH GVLLACLATRITREEVEPLAQGIVAWHQALAPAGDTTCVFRDSAFADDVAKTNLAAILEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHH HGIANVRSL CCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2837577 [H]