| Definition | Mesorhizobium loti MAFF303099 plasmid pMLb, complete sequence. |
|---|---|
| Accession | NC_002682 |
| Length | 208,315 |
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The map label for this gene is yubM [H]
Identifier: 13488537
GI number: 13488537
Start: 160171
End: 162414
Strand: Direct
Name: yubM [H]
Synonym: mlr9703
Alternate gene names: 13488537
Gene position: 160171-162414 (Clockwise)
Preceding gene: 13488536
Following gene: 13488538
Centisome position: 76.89
GC content: 62.3
Gene sequence:
>2244_bases GTGCGCGCTCGGCTGTCGACCAACGGTATGTCGGATTGTGCAGGCAGGAGAGGGAGAGGGTTGGAGGAGTCTTGTGACGG GTTCAAAGCCGAGAGAGAGGCTCGCGGCGGCCCGTCGCGGAGACCTTCAATGACCACTGCCGTTCAAAAGATCACGCTGT CGTCCTCGCGCGACATCCCCTTCAGCAAGCTGGTCCTCGGCCAGTCCAATGTGCGTCGCATCAAGGCAGGCGTCTCGATC CAGGACCTGGCTGCTTCGATCGCTCGCCGCGGGTTGATCCAGAGCCTACACGTTCGACCTGTGGTTGATACCGATGGCCA GGAGATGGGGATGTTCGAGGTACCAGCCGGCGGCCGCCGATATCGCGCCCTCGAGTTGCTTGTGAAGCAAAAGCAGCTTG CCAAAACAGCGCCGGTTCCCTGTGTCGTCGGCAGTTCTTCCAGCGCCATTCTGGCGAGGGAAGTCTCACTGGCAGAGAAC GTCGAACGCGCGCCACTTCACCCGCTGGATCAATATCGGGCCTTCAAGGATTTGCTCGACCAGGGTATGTCAGAAGAGGA GATTGCGGCTGCTTTCTTCATCTCGGTCAACGTCGTCAAGCAGCGGCTCAAGCTCACGACCGTTTCGCCCGCGCTTCTCG ACGTCTATGCCGAGGACGGCATGACGATCGCCCAGCTTGAGGCATTTTCGGTCAGCAGGGATCATACAAGACAGGAGCAG GTCTGGGAGGCGATCAAGAACAACTGGTCGAAAGAGCCATACCAGATCCGCCGCATGCTCACCGAGAACACAGTGCGCGC CTCCGACAAGCGGGCCGTGTTTGTCGGCCTGGAGCGCTATGAGGCGGCGGGCGGCGAAGTGCTGCGCGATCTGTTCCAGT CGGATGATGGCGGCTGGCTGCAGGACGTTCCGCTGCTTGAACGGCTGGTGAAGGACAAGCTCCAGATGATGGCCGACGAA ATAGCCAACGAAGGTTGGAAGTGGATCGAAGTCGCCGTGAGCTTCCCCTATGGCGCGGCCGACGGCCTGCGTGAGCTCGA GGGCGCACCGGTTGACCTCAGCAGCGAGGAGAAGGCAACGCTCCACGCGCTTCGCGACGAGCTCAGGAGTCTACAAGCGG AGTACGAGGAAGCTGATGAATTGCCCGATGAGGTCGACCAGCGCTTTGGCGAACTCGAATCCGCGATCAAGACGCTCGAG GCGCGCCCGGTCCGTTTCGATCTCGCCGAAATTGCGCGTGCGGGTGTCTTCGTCAGCATCGACACGGACGGAGCAATTCT CATCGAGCGCGGCTATGTGAGGCCGCAGGATGAGGCGCCCGTGACACCCGAGGGCGACAACGATCCCGGCACCGACGGGT CCGACGTCGAAGCGACGGGTTTGGTTCAGCGGGCCGTCATCACCATCGGTGGCCCGCCGGCGGGCCCGGAGGAGGATGAT GAGGATGGCATCAAGCCGTTGCCGGATCGCCTGATCACGGAACTGACCGCGGATCGCACCCTGGCTCTGCGCGACAAGCT CGCGAACGATCCGGCAACCGCTTTTCTGGCCGTGCTTCACAAATTCGTCCGTGACGCTTTCTCTGGCTACAGCGCGCAAG GCGTGGCGATGGAAGTATTTGTCCGCGGCACGGTCTTTCCGGTCCAGTCCGAAGGGCTTCGGGATACGAATTATGCGCGC TCGATCAAGAACCGCCACGAGGCCTGGGAAAAGCGTCTTCCAACGGACGTCGCCGACCTGTGGGACTCACTCTCTGCACT GACGGGTACCGAGCAAACTGAGCTGTTCGCGCATTGCGCATCCCTCGGCGTCAACGCCCTCTACGAAAGGGCCGATCGCT ACGGTAACGGCGCCATCTCGACGCACGGTGTCCAACAGCGCCTTGCGGATGCCGATCACCTTGCTCGGGCAGTTGGGCTC GACATGATCGCCGCCGGATGGCGCCCCACTGTCGGCAACTATCTCGGCAGTGTCACCAAGGCGCGTATCCTCCAAGCCGT TCGCGAGGGTGCTGGGGAGCGCGCCTCCCAGCTCATCGATCACCTCAAGAAGGGCGACATGGCCAAGGAAGCCGAACGGC TGCTCGCCGATAGTGGCTGGCTGCCCGAGCCTCTGCGGCTTGCCGACGTTGATATCGAAGCAGTCGGCAGCAACGCTGGC GACGAGGATGAGACGCTGCCGGAATTCTTGGCAGGAGGCGACGCCGGCGATGAGGACGTAAAGCAGCTCGACGCTGCCGA GTAG
Upstream 100 bases:
>100_bases GGCCGACTGGCTTCTTGGCCACCTGCCGGCGGAGGCCGAAGCATCCATCGGGCTGGGCGCAGGCAATGATAGATCGGCGG CATAACCTTCGCCGACCGAC
Downstream 100 bases:
>100_bases GCCCGGCGCCACTCGCCATCCGAACGCCTGGTACTCGCAAGAGTGCCGGGCGTTTTTTGTTCTGTCTGAGAGTGAGTGTC CGGTCGGGGCGGGTTGAGCC
Product: putative plasmid stabilization protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 747; Mature: 747
Protein sequence:
>747_residues MRARLSTNGMSDCAGRRGRGLEESCDGFKAEREARGGPSRRPSMTTAVQKITLSSSRDIPFSKLVLGQSNVRRIKAGVSI QDLAASIARRGLIQSLHVRPVVDTDGQEMGMFEVPAGGRRYRALELLVKQKQLAKTAPVPCVVGSSSSAILAREVSLAEN VERAPLHPLDQYRAFKDLLDQGMSEEEIAAAFFISVNVVKQRLKLTTVSPALLDVYAEDGMTIAQLEAFSVSRDHTRQEQ VWEAIKNNWSKEPYQIRRMLTENTVRASDKRAVFVGLERYEAAGGEVLRDLFQSDDGGWLQDVPLLERLVKDKLQMMADE IANEGWKWIEVAVSFPYGAADGLRELEGAPVDLSSEEKATLHALRDELRSLQAEYEEADELPDEVDQRFGELESAIKTLE ARPVRFDLAEIARAGVFVSIDTDGAILIERGYVRPQDEAPVTPEGDNDPGTDGSDVEATGLVQRAVITIGGPPAGPEEDD EDGIKPLPDRLITELTADRTLALRDKLANDPATAFLAVLHKFVRDAFSGYSAQGVAMEVFVRGTVFPVQSEGLRDTNYAR SIKNRHEAWEKRLPTDVADLWDSLSALTGTEQTELFAHCASLGVNALYERADRYGNGAISTHGVQQRLADADHLARAVGL DMIAAGWRPTVGNYLGSVTKARILQAVREGAGERASQLIDHLKKGDMAKEAERLLADSGWLPEPLRLADVDIEAVGSNAG DEDETLPEFLAGGDAGDEDVKQLDAAE
Sequences:
>Translated_747_residues MRARLSTNGMSDCAGRRGRGLEESCDGFKAEREARGGPSRRPSMTTAVQKITLSSSRDIPFSKLVLGQSNVRRIKAGVSI QDLAASIARRGLIQSLHVRPVVDTDGQEMGMFEVPAGGRRYRALELLVKQKQLAKTAPVPCVVGSSSSAILAREVSLAEN VERAPLHPLDQYRAFKDLLDQGMSEEEIAAAFFISVNVVKQRLKLTTVSPALLDVYAEDGMTIAQLEAFSVSRDHTRQEQ VWEAIKNNWSKEPYQIRRMLTENTVRASDKRAVFVGLERYEAAGGEVLRDLFQSDDGGWLQDVPLLERLVKDKLQMMADE IANEGWKWIEVAVSFPYGAADGLRELEGAPVDLSSEEKATLHALRDELRSLQAEYEEADELPDEVDQRFGELESAIKTLE ARPVRFDLAEIARAGVFVSIDTDGAILIERGYVRPQDEAPVTPEGDNDPGTDGSDVEATGLVQRAVITIGGPPAGPEEDD EDGIKPLPDRLITELTADRTLALRDKLANDPATAFLAVLHKFVRDAFSGYSAQGVAMEVFVRGTVFPVQSEGLRDTNYAR SIKNRHEAWEKRLPTDVADLWDSLSALTGTEQTELFAHCASLGVNALYERADRYGNGAISTHGVQQRLADADHLARAVGL DMIAAGWRPTVGNYLGSVTKARILQAVREGAGERASQLIDHLKKGDMAKEAERLLADSGWLPEPLRLADVDIEAVGSNAG DEDETLPEFLAGGDAGDEDVKQLDAAE >Mature_747_residues MRARLSTNGMSDCAGRRGRGLEESCDGFKAEREARGGPSRRPSMTTAVQKITLSSSRDIPFSKLVLGQSNVRRIKAGVSI QDLAASIARRGLIQSLHVRPVVDTDGQEMGMFEVPAGGRRYRALELLVKQKQLAKTAPVPCVVGSSSSAILAREVSLAEN VERAPLHPLDQYRAFKDLLDQGMSEEEIAAAFFISVNVVKQRLKLTTVSPALLDVYAEDGMTIAQLEAFSVSRDHTRQEQ VWEAIKNNWSKEPYQIRRMLTENTVRASDKRAVFVGLERYEAAGGEVLRDLFQSDDGGWLQDVPLLERLVKDKLQMMADE IANEGWKWIEVAVSFPYGAADGLRELEGAPVDLSSEEKATLHALRDELRSLQAEYEEADELPDEVDQRFGELESAIKTLE ARPVRFDLAEIARAGVFVSIDTDGAILIERGYVRPQDEAPVTPEGDNDPGTDGSDVEATGLVQRAVITIGGPPAGPEEDD EDGIKPLPDRLITELTADRTLALRDKLANDPATAFLAVLHKFVRDAFSGYSAQGVAMEVFVRGTVFPVQSEGLRDTNYAR SIKNRHEAWEKRLPTDVADLWDSLSALTGTEQTELFAHCASLGVNALYERADRYGNGAISTHGVQQRLADADHLARAVGL DMIAAGWRPTVGNYLGSVTKARILQAVREGAGERASQLIDHLKKGDMAKEAERLLADSGWLPEPLRLADVDIEAVGSNAG DEDETLPEFLAGGDAGDEDVKQLDAAE
Specific function: Unknown
COG id: COG1475
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the parB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004437 - InterPro: IPR003115 [H]
Pfam domain/function: PF02195 ParBc [H]
EC number: NA
Molecular weight: Translated: 81651; Mature: 81651
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRARLSTNGMSDCAGRRGRGLEESCDGFKAEREARGGPSRRPSMTTAVQKITLSSSRDIP CCCCCCCCCCHHHCCCCCCCCHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC FSKLVLGQSNVRRIKAGVSIQDLAASIARRGLIQSLHVRPVVDTDGQEMGMFEVPAGGRR HHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCCCH YRALELLVKQKQLAKTAPVPCVVGSSSSAILAREVSLAENVERAPLHPLDQYRAFKDLLD HHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH QGMSEEEIAAAFFISVNVVKQRLKLTTVSPALLDVYAEDGMTIAQLEAFSVSRDHTRQEQ CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEHHHHHHCCHHHHHHHH VWEAIKNNWSKEPYQIRRMLTENTVRASDKRAVFVGLERYEAAGGEVLRDLFQSDDGGWL HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCHHHHHHHHHCCCCCCC QDVPLLERLVKDKLQMMADEIANEGWKWIEVAVSFPYGAADGLRELEGAPVDLSSEEKAT CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCHHHH LHALRDELRSLQAEYEEADELPDEVDQRFGELESAIKTLEARPVRFDLAEIARAGVFVSI HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHCCEEEEE DTDGAILIERGYVRPQDEAPVTPEGDNDPGTDGSDVEATGLVQRAVITIGGPPAGPEEDD CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEECCCCCCCCCCC EDGIKPLPDRLITELTADRTLALRDKLANDPATAFLAVLHKFVRDAFSGYSAQGVAMEVF CCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE VRGTVFPVQSEGLRDTNYARSIKNRHEAWEKRLPTDVADLWDSLSALTGTEQTELFAHCA ECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH SLGVNALYERADRYGNGAISTHGVQQRLADADHLARAVGLDMIAAGWRPTVGNYLGSVTK HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH ARILQAVREGAGERASQLIDHLKKGDMAKEAERLLADSGWLPEPLRLADVDIEAVGSNAG HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEECCCHHCCCCCCC DEDETLPEFLAGGDAGDEDVKQLDAAE CCHHHHHHHHCCCCCCHHHHHHHCCCC >Mature Secondary Structure MRARLSTNGMSDCAGRRGRGLEESCDGFKAEREARGGPSRRPSMTTAVQKITLSSSRDIP CCCCCCCCCCHHHCCCCCCCCHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC FSKLVLGQSNVRRIKAGVSIQDLAASIARRGLIQSLHVRPVVDTDGQEMGMFEVPAGGRR HHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCCCH YRALELLVKQKQLAKTAPVPCVVGSSSSAILAREVSLAENVERAPLHPLDQYRAFKDLLD HHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH QGMSEEEIAAAFFISVNVVKQRLKLTTVSPALLDVYAEDGMTIAQLEAFSVSRDHTRQEQ CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEHHHHHHCCHHHHHHHH VWEAIKNNWSKEPYQIRRMLTENTVRASDKRAVFVGLERYEAAGGEVLRDLFQSDDGGWL HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCHHHHHHHHHCCCCCCC QDVPLLERLVKDKLQMMADEIANEGWKWIEVAVSFPYGAADGLRELEGAPVDLSSEEKAT CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCHHHH LHALRDELRSLQAEYEEADELPDEVDQRFGELESAIKTLEARPVRFDLAEIARAGVFVSI HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHCCEEEEE DTDGAILIERGYVRPQDEAPVTPEGDNDPGTDGSDVEATGLVQRAVITIGGPPAGPEEDD CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEECCCCCCCCCCC EDGIKPLPDRLITELTADRTLALRDKLANDPATAFLAVLHKFVRDAFSGYSAQGVAMEVF CCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE VRGTVFPVQSEGLRDTNYARSIKNRHEAWEKRLPTDVADLWDSLSALTGTEQTELFAHCA ECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH SLGVNALYERADRYGNGAISTHGVQQRLADADHLARAVGLDMIAAGWRPTVGNYLGSVTK HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH ARILQAVREGAGERASQLIDHLKKGDMAKEAERLLADSGWLPEPLRLADVDIEAVGSNAG HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEECCCHHCCCCCCC DEDETLPEFLAGGDAGDEDVKQLDAAE CCHHHHHHHHCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9722640; 9628576 [H]