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The map label for this gene is ligC

Identifier: 13488524

GI number: 13488524

Start: 149026

End: 150039

Strand: Reverse

Name: ligC

Synonym: mll9685

Alternate gene names: NA

Gene position: 150039-149026 (Counterclockwise)

Preceding gene: 13488526

Following gene: 13488523

Centisome position: 72.03

GC content: 61.64

Gene sequence:

>1014_bases
ATGGTAGCGGTATACGACGTCGAGTTTCCCTTGCCGTTGAACACGCAGCCGATGGAAGCGCGCGCCGCAGGGGTATTGCC
GCGGGACGATGGTCCCTGGCAGTACGAACCGAAATGGGATGGCTTCCGTTGCCTCGCCTTCAAGGCCGGCAAGGCCGTCG
ACCTCAGGGCAAAATCCGGCAAACCGCTTGGTCGTTATTTTCCCGAACTGATGGCGGCCTTGAGTGCGCTTGCGGCAACG
GAATTCGTCATCGACGGTGAAATCATAATCGAGATCGAGGGCCGTGCCTCTTTCGACGCGCTGCAGATGCGGCTTCATCC
AGCAGAGAGCCGCATCCGCAAGCTCAGTCGGGAAACTCCCGCACGCCTGGTCGTTTTCGATATGCTCGTGGCTCCGGAAG
GTCGGCCGCGGATGGAACTGCCATTGCGTGATCGGCGCGCAGAAGCTGAAGACTTGGTTGCCAAGGCAAAGACCAAGACC
TTGCGGCTTTCGCCGGCCACCACCAGCCTGGCGACAGCCGACAACTGGTTGAAGGGCGCCGGTAGTGGTTCCATCGACGG
CGTCGTGGCCAAGTTGCTCAACGGTCCCTACAGGCCGGGCGAACGCGCGATGGTGAAGGTAAAGCGCCTGCGCACCGCCG
ACTGCGTGGTGGGTGGGTTCCGCTATCTGAACGGCAAACGACAGGTTGGATCGCTGCTGCTCGGCCTCTACAATGGCGAT
GGTCTGCTCGACCATGTAGGGTTCACATCCACCATCGCCAATGACGAGCGCGCGGTGCTGACGGAAAAGCTCGAAAACCT
GCGCGGCGGATCCGGCTTCACCGGCAAGGCGCCGGGCGGCCCGAGCCGTTGGAGCACCGAGCGTAGCGGCGAATGGGAAC
CCGTCAGACCGGAATTGGTTGTCGAAGTTCGCTTCGACCATGTTACCGGCGACCGCTTCCGGCATGGAACAAAGCTCGTG
CGCTGGCGTCCGGATAAGGCGCCGCTCCAATGTACGTTCGAGCAGTTAGAATAG

Upstream 100 bases:

>100_bases
TTGGCTGCCTTCTGGCGAAGTTTCATGGCAAAGCCAGGAACGGCGGCTCAGCTGGGTTTGCTGCGGCGTGGACCGTCCCC
TATCGCGATATGGAAGAGCG

Downstream 100 bases:

>100_bases
TCTGAGACCTTCTCGATCAATCGCGGTAATCATGTTCTGAATGGGAACCGATGCGTGTCCCTATCCTTCGCATCGGCGAT
CGGCGCCGCTTCAGAAGACC

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MVAVYDVEFPLPLNTQPMEARAAGVLPRDDGPWQYEPKWDGFRCLAFKAGKAVDLRAKSGKPLGRYFPELMAALSALAAT
EFVIDGEIIIEIEGRASFDALQMRLHPAESRIRKLSRETPARLVVFDMLVAPEGRPRMELPLRDRRAEAEDLVAKAKTKT
LRLSPATTSLATADNWLKGAGSGSIDGVVAKLLNGPYRPGERAMVKVKRLRTADCVVGGFRYLNGKRQVGSLLLGLYNGD
GLLDHVGFTSTIANDERAVLTEKLENLRGGSGFTGKAPGGPSRWSTERSGEWEPVRPELVVEVRFDHVTGDRFRHGTKLV
RWRPDKAPLQCTFEQLE

Sequences:

>Translated_337_residues
MVAVYDVEFPLPLNTQPMEARAAGVLPRDDGPWQYEPKWDGFRCLAFKAGKAVDLRAKSGKPLGRYFPELMAALSALAAT
EFVIDGEIIIEIEGRASFDALQMRLHPAESRIRKLSRETPARLVVFDMLVAPEGRPRMELPLRDRRAEAEDLVAKAKTKT
LRLSPATTSLATADNWLKGAGSGSIDGVVAKLLNGPYRPGERAMVKVKRLRTADCVVGGFRYLNGKRQVGSLLLGLYNGD
GLLDHVGFTSTIANDERAVLTEKLENLRGGSGFTGKAPGGPSRWSTERSGEWEPVRPELVVEVRFDHVTGDRFRHGTKLV
RWRPDKAPLQCTFEQLE
>Mature_337_residues
MVAVYDVEFPLPLNTQPMEARAAGVLPRDDGPWQYEPKWDGFRCLAFKAGKAVDLRAKSGKPLGRYFPELMAALSALAAT
EFVIDGEIIIEIEGRASFDALQMRLHPAESRIRKLSRETPARLVVFDMLVAPEGRPRMELPLRDRRAEAEDLVAKAKTKT
LRLSPATTSLATADNWLKGAGSGSIDGVVAKLLNGPYRPGERAMVKVKRLRTADCVVGGFRYLNGKRQVGSLLLGLYNGD
GLLDHVGFTSTIANDERAVLTEKLENLRGGSGFTGKAPGGPSRWSTERSGEWEPVRPELVVEVRFDHVTGDRFRHGTKLV
RWRPDKAPLQCTFEQLE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 37264; Mature: 37264

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAVYDVEFPLPLNTQPMEARAAGVLPRDDGPWQYEPKWDGFRCLAFKAGKAVDLRAKSG
CEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEECCCC
KPLGRYFPELMAALSALAATEFVIDGEIIIEIEGRASFDALQMRLHPAESRIRKLSRETP
CCHHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCEEHHEEECCHHHHHHHHHHCCC
ARLVVFDMLVAPEGRPRMELPLRDRRAEAEDLVAKAKTKTLRLSPATTSLATADNWLKGA
CEEEEEEHEECCCCCCCCCCCCHHHCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCC
GSGSIDGVVAKLLNGPYRPGERAMVKVKRLRTADCVVGGFRYLNGKRQVGSLLLGLYNGD
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEEECCC
GLLDHVGFTSTIANDERAVLTEKLENLRGGSGFTGKAPGGPSRWSTERSGEWEPVRPELV
CCCHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
VEVRFDHVTGDRFRHGTKLVRWRPDKAPLQCTFEQLE
EEEEECCCCCCHHHCCCEEEEECCCCCCCEEEHHHCC
>Mature Secondary Structure
MVAVYDVEFPLPLNTQPMEARAAGVLPRDDGPWQYEPKWDGFRCLAFKAGKAVDLRAKSG
CEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEECCCC
KPLGRYFPELMAALSALAATEFVIDGEIIIEIEGRASFDALQMRLHPAESRIRKLSRETP
CCHHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCEEHHEEECCHHHHHHHHHHCCC
ARLVVFDMLVAPEGRPRMELPLRDRRAEAEDLVAKAKTKTLRLSPATTSLATADNWLKGA
CEEEEEEHEECCCCCCCCCCCCHHHCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCC
GSGSIDGVVAKLLNGPYRPGERAMVKVKRLRTADCVVGGFRYLNGKRQVGSLLLGLYNGD
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEEECCC
GLLDHVGFTSTIANDERAVLTEKLENLRGGSGFTGKAPGGPSRWSTERSGEWEPVRPELV
CCCHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
VEVRFDHVTGDRFRHGTKLVRWRPDKAPLQCTFEQLE
EEEEECCCCCCHHHCCCEEEEECCCCCCCEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]