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The map label for this gene is radA [C]

Identifier: 13488520

GI number: 13488520

Start: 144284

End: 145813

Strand: Direct

Name: radA [C]

Synonym: mlr9679

Alternate gene names: 13488520

Gene position: 144284-145813 (Clockwise)

Preceding gene: 13488516

Following gene: 13488521

Centisome position: 69.26

GC content: 56.99

Gene sequence:

>1530_bases
ATGGTATCCGTTAAGGAGTTCACGAAGAGCGAGCACGGCAACGTGGATCAAGACGACGCTTCACCAATATCATCTGGCGT
GGAAGGCCTCGACTATGTCCTGCGAGGCGGATACGCAAAATTCCGTTCACATCTTGTAGAGGGCAGGCCAGGTTCAGGTA
AGACCACACTTGGTCTGCAGTTTCTGATCAAAGGCGCGGCGGCTGGCGAGAAATGCCTTTATATAACGCTGTCCGAAAGC
AAGCGTGAACTGCACTCGGTCGCGGAACGGCATGGATTTTCTCTTGACGGTATCGAAATCCTCGAGCTCGTCCCGCCGGA
GCTGAGCCTCGATCCGTCGCAGTTACAAACTCTGGTTCATTCGTCCGATCTCGAGCTTGGTGAAACCGTCCAGTCAGCGC
TCGCCGAAATCGAGCGCATGAAGCCAGATCGCGTGGTCTTCGATTCCCTGTCGGAAATTCGCCTCTTGTCGCAGGGCTCG
TTACGCTATCGGCGGCAGGTTCTGGCTTTGAAAAGCTTTTTCCTGCTCAACAATGCGACGGTGCTTCTGCTTGACGATCT
CACGGCTGAACATGACGATCTCAACCTGCATTCCATCAGTCATGGCGTCATCCGGATGGAACAGCTTTCGCCGATCTATG
GCGGAGAGCGGCGGCGCCTGCGCATCATCAAAATGCGCGGCGTTCAAATTCGAGGCGGGTTCCACGACTTCGTCATTCGA
CCTGGCGGCGTGATGGTCTTTCCACGCTTGGTTGCCTCCGAACACGAGATGGCCGAGCATGGAACACCGGCTACCGGAAA
CGGTTCTGTCGACACGCTCGTCGGTGGCGGGCTGGACCGCGGAACCAGCACTCTCCTGATGGGGCCTTCTGGCGTCGGCA
AATCGACCATCGCGTGCAGCTATTGTCATGCCGCTCTCAATCGCGGCGAGCATGTGCTGGTGCTTTTGTTCGATGAAACC
AGGCGGATTTTCCTGGCGCGCGCGTCAGGCCTCGGCATGGACCTGGGGCCATTCGCCGACAACGGCAGTTTGCTGCTGGA
ACAGATCGACCCGGCGGAATTGTCGCCTGGTGAATTGTCGTCGCGCATCCAGTCGGCTGTGGAGCGCTCAAGGGCAAGGA
TCGTCGTCATCGACAGCCTGACCGGATATCTCAATGCCATGTCGGAGGAGCAGCATCTTGTGCTGCAGATGCACGAGATC
CTGACATACCTTAATCAAAAGGGCGTTGTGACGATCCTGCTGTTGGCCAATCATGGGCTGATCGGGCAAATGTCAGCCCC
CGTCGACATGACCTATCTCTGCGATTCCGTAATGCTCCTGCGCTTCTTCGAAAGCGGCGGCCGTCTGAGACGAGCTATTT
CCGTGGTCAAAAAACGCGTCGGACCACATGAGGACACCATTCGCGAATTCAAGATAAGCGCCACCGGCCTGGCCGTTGGT
GAACCACTAGAGGAATTTCGAGGGATCCTGACTGGCGTGCCCACCTACGAGGGTAAGCAAGGCAACCTGCTGCAAGACAA
GGCGTCGTGA

Upstream 100 bases:

>100_bases
GCAACGACACGGTGCGACAGCCCCGACAACCTAACGCCGTCATTCCCTTTCTTGCGACTGACCCAAATTGCCTCTCTTGC
CGAAGAGGGAACCATCGAAA

Downstream 100 bases:

>100_bases
TGCCTTCGGACCCTGGTGTGCTCGTGTTGGCACCGGTCGGGCGCGACGCGAAGGTCGCGTCGGCAATTCTCGCGCAGAAC
GACATCACGTCCCACATCTG

Product: circadian oscillation regulator KaiC-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MVSVKEFTKSEHGNVDQDDASPISSGVEGLDYVLRGGYAKFRSHLVEGRPGSGKTTLGLQFLIKGAAAGEKCLYITLSES
KRELHSVAERHGFSLDGIEILELVPPELSLDPSQLQTLVHSSDLELGETVQSALAEIERMKPDRVVFDSLSEIRLLSQGS
LRYRRQVLALKSFFLLNNATVLLLDDLTAEHDDLNLHSISHGVIRMEQLSPIYGGERRRLRIIKMRGVQIRGGFHDFVIR
PGGVMVFPRLVASEHEMAEHGTPATGNGSVDTLVGGGLDRGTSTLLMGPSGVGKSTIACSYCHAALNRGEHVLVLLFDET
RRIFLARASGLGMDLGPFADNGSLLLEQIDPAELSPGELSSRIQSAVERSRARIVVIDSLTGYLNAMSEEQHLVLQMHEI
LTYLNQKGVVTILLLANHGLIGQMSAPVDMTYLCDSVMLLRFFESGGRLRRAISVVKKRVGPHEDTIREFKISATGLAVG
EPLEEFRGILTGVPTYEGKQGNLLQDKAS

Sequences:

>Translated_509_residues
MVSVKEFTKSEHGNVDQDDASPISSGVEGLDYVLRGGYAKFRSHLVEGRPGSGKTTLGLQFLIKGAAAGEKCLYITLSES
KRELHSVAERHGFSLDGIEILELVPPELSLDPSQLQTLVHSSDLELGETVQSALAEIERMKPDRVVFDSLSEIRLLSQGS
LRYRRQVLALKSFFLLNNATVLLLDDLTAEHDDLNLHSISHGVIRMEQLSPIYGGERRRLRIIKMRGVQIRGGFHDFVIR
PGGVMVFPRLVASEHEMAEHGTPATGNGSVDTLVGGGLDRGTSTLLMGPSGVGKSTIACSYCHAALNRGEHVLVLLFDET
RRIFLARASGLGMDLGPFADNGSLLLEQIDPAELSPGELSSRIQSAVERSRARIVVIDSLTGYLNAMSEEQHLVLQMHEI
LTYLNQKGVVTILLLANHGLIGQMSAPVDMTYLCDSVMLLRFFESGGRLRRAISVVKKRVGPHEDTIREFKISATGLAVG
EPLEEFRGILTGVPTYEGKQGNLLQDKAS
>Mature_509_residues
MVSVKEFTKSEHGNVDQDDASPISSGVEGLDYVLRGGYAKFRSHLVEGRPGSGKTTLGLQFLIKGAAAGEKCLYITLSES
KRELHSVAERHGFSLDGIEILELVPPELSLDPSQLQTLVHSSDLELGETVQSALAEIERMKPDRVVFDSLSEIRLLSQGS
LRYRRQVLALKSFFLLNNATVLLLDDLTAEHDDLNLHSISHGVIRMEQLSPIYGGERRRLRIIKMRGVQIRGGFHDFVIR
PGGVMVFPRLVASEHEMAEHGTPATGNGSVDTLVGGGLDRGTSTLLMGPSGVGKSTIACSYCHAALNRGEHVLVLLFDET
RRIFLARASGLGMDLGPFADNGSLLLEQIDPAELSPGELSSRIQSAVERSRARIVVIDSLTGYLNAMSEEQHLVLQMHEI
LTYLNQKGVVTILLLANHGLIGQMSAPVDMTYLCDSVMLLRFFESGGRLRRAISVVKKRVGPHEDTIREFKISATGLAVG
EPLEEFRGILTGVPTYEGKQGNLLQDKAS

Specific function: May Play A Role In The Repair Of Endogenous Alkylation Damage. [C]

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 55569; Mature: 55569

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSVKEFTKSEHGNVDQDDASPISSGVEGLDYVLRGGYAKFRSHLVEGRPGSGKTTLGLQ
CCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHH
FLIKGAAAGEKCLYITLSESKRELHSVAERHGFSLDGIEILELVPPELSLDPSQLQTLVH
HHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCHHEECCCCCCCCCHHHHHHHHH
SSDLELGETVQSALAEIERMKPDRVVFDSLSEIRLLSQGSLRYRRQVLALKSFFLLNNAT
HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCE
VLLLDDLTAEHDDLNLHSISHGVIRMEQLSPIYGGERRRLRIIKMRGVQIRGGFHDFVIR
EEEEECCCCCCCCCCCEEHHCCCEEHHHCCCCCCCCCCEEEEEEEECEEEECCCEEEEEC
PGGVMVFPRLVASEHEMAEHGTPATGNGSVDTLVGGGLDRGTSTLLMGPSGVGKSTIACS
CCCEEEEHHHHHCHHHHHHCCCCCCCCCCCHHEECCCCCCCCCEEEECCCCCCCCHHHHH
YCHAALNRGEHVLVLLFDETRRIFLARASGLGMDLGPFADNGSLLLEQIDPAELSPGELS
HHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHH
SRIQSAVERSRARIVVIDSLTGYLNAMSEEQHLVLQMHEILTYLNQKGVVTILLLANHGL
HHHHHHHHHCCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
IGQMSAPVDMTYLCDSVMLLRFFESGGRLRRAISVVKKRVGPHEDTIREFKISATGLAVG
EECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCCC
EPLEEFRGILTGVPTYEGKQGNLLQDKAS
CCHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVSVKEFTKSEHGNVDQDDASPISSGVEGLDYVLRGGYAKFRSHLVEGRPGSGKTTLGLQ
CCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHH
FLIKGAAAGEKCLYITLSESKRELHSVAERHGFSLDGIEILELVPPELSLDPSQLQTLVH
HHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCHHEECCCCCCCCCHHHHHHHHH
SSDLELGETVQSALAEIERMKPDRVVFDSLSEIRLLSQGSLRYRRQVLALKSFFLLNNAT
HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCE
VLLLDDLTAEHDDLNLHSISHGVIRMEQLSPIYGGERRRLRIIKMRGVQIRGGFHDFVIR
EEEEECCCCCCCCCCCEEHHCCCEEHHHCCCCCCCCCCEEEEEEEECEEEECCCEEEEEC
PGGVMVFPRLVASEHEMAEHGTPATGNGSVDTLVGGGLDRGTSTLLMGPSGVGKSTIACS
CCCEEEEHHHHHCHHHHHHCCCCCCCCCCCHHEECCCCCCCCCEEEECCCCCCCCHHHHH
YCHAALNRGEHVLVLLFDETRRIFLARASGLGMDLGPFADNGSLLLEQIDPAELSPGELS
HHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHH
SRIQSAVERSRARIVVIDSLTGYLNAMSEEQHLVLQMHEILTYLNQKGVVTILLLANHGL
HHHHHHHHHCCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
IGQMSAPVDMTYLCDSVMLLRFFESGGRLRRAISVVKKRVGPHEDTIREFKISATGLAVG
EECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCCC
EPLEEFRGILTGVPTYEGKQGNLLQDKAS
CCHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]