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The map label for this gene is ymdC [H]

Identifier: 13488516

GI number: 13488516

Start: 139957

End: 141357

Strand: Direct

Name: ymdC [H]

Synonym: mlr9675

Alternate gene names: 13488516

Gene position: 139957-141357 (Clockwise)

Preceding gene: 13488515

Following gene: 13488520

Centisome position: 67.19

GC content: 58.24

Gene sequence:

>1401_bases
ATGGACGTCTCGATTACGCAAACATCGACCGATAAAATCAAAGCAGGTAAGAGCGGCCTGCTGCTGATTTCAGACAATTA
CGATGCGTTCGCCGCGCGTGTTTTGGCGGCAAGGGGCGCGGTTCGCACGCTCGATCTCATGTATTATCTCTGGCACGACG
ACCACACGGGACGCTTGCTTTTGCAGGAAGTTGTCCGGGCGGCCCAGCGGGGCGTGCGCGTCAGAATGCTGCTCGACGAC
GTCAATCCGCGCAAGAGCGATGCCGCTTATTTGGCGCTGAACAACCACCCAAACATCGAACTCAGATTGTTCAATCCGAG
CGGCATCAGAGCGCGCGGCATCATGCGCGGCGCGGAAGTCCTCTTGCGGCTTTTTGCATTGACAAGGCGGATGCACAACA
AGGCGTGGATTGCCGACGACAGCATCGCCATCGTCGGTGGGCGTAATGTCGGAGATGCCTATTTTGACGCGGCGGAGACG
AATTTCCGTGACCTCGATGTGCTGGTCCTCGGTCCCGCCGTGCAACAAACTGCTCGAATCTTCCAGACTTTCTGGGCATG
CCAGGACGCCAAGCCAATAGGTGAACTCGGCGCAGCCGCGCCGGGCTCGCATGCCCCTAATTTCGAGAGAAGCGACGCCG
AAACCGAGTCGACGCTTTTGAGCGGTATCGGCGACAAGGGCTCCACCGCCGAGTTTATAGCAGCGAGCAGCGACGTACAT
TGGGTCGACCGCGTGCGCGTGATCTCTGACCCTCCGGAGAAGGTCCGAGGCTGGAGACCGCGCGGTTGGCTGATGAAGGA
GTTGCTCCCAATCATTCAGTCGGCGCGCAAGCGCGTGGAAATCGTGTCCCCGTATTTTATCCCCGGCAAGAAGGGTTCAA
AAATCCTCGGCGACCTCGTCGACGACGGAGTGCAAGTCGCTGTTTTGACCAACTCCTTGGCCGCGACCGATGTCGCCGCC
GTCCACGGAGCCTACGCCAACTATCGCAAGCGCTTGTTGAGAAAGGGCGTACAGCTCTTCGAGCTTCAGCCCTTTAGTAG
GCAGCCCAAGATTTCTGTATTTGGATCAAAGGGCGCCAGCCTCCACACCAAAGCGTTCAGCGTCGACGACAGGATCGGTT
TCGTGGGATCATTCAACTTCGATCCGCGGTCCGTATCGTTGAACTCGGAAATGGGAGTGCTTTTTGAAGACCAGAAACTG
GTCATGGAACTGCGGCACCGCTTCAAATCCGAGACTGCGCCGGAAGCAAGCTACCGGCTTGAACTCAAGAACGGGGTTCT
GCGCTGGCATGGCAGCGATGAAGGCAGACCGCAAACCTATGCTCGCGAACCCGAGGCAGCATTGTTCCGCCGCATCCTGT
CCGCCCTGGTCAGGTACCTCCCGATCGAATCCCAGCTTTAG

Upstream 100 bases:

>100_bases
GCTCTCAGCAGGCTCAAGACCCTCGTGCAACCAGATCAGCGCTCGCGGGTTCTTGACCTAATGAAACGGCGCCTCGTTCT
CCTCCGAAACTGGTCAGTCC

Downstream 100 bases:

>100_bases
CGGTGGCTTGTACTGCGGACTTTGGAACTGCTGCCTTGCCTTGCCGAGCGATGGGGATGGCGCAGCCAAGGCGAGCGTGG
GACCAGCCGCAGTCGAAGTC

Product: phopholipase D-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MDVSITQTSTDKIKAGKSGLLLISDNYDAFAARVLAARGAVRTLDLMYYLWHDDHTGRLLLQEVVRAAQRGVRVRMLLDD
VNPRKSDAAYLALNNHPNIELRLFNPSGIRARGIMRGAEVLLRLFALTRRMHNKAWIADDSIAIVGGRNVGDAYFDAAET
NFRDLDVLVLGPAVQQTARIFQTFWACQDAKPIGELGAAAPGSHAPNFERSDAETESTLLSGIGDKGSTAEFIAASSDVH
WVDRVRVISDPPEKVRGWRPRGWLMKELLPIIQSARKRVEIVSPYFIPGKKGSKILGDLVDDGVQVAVLTNSLAATDVAA
VHGAYANYRKRLLRKGVQLFELQPFSRQPKISVFGSKGASLHTKAFSVDDRIGFVGSFNFDPRSVSLNSEMGVLFEDQKL
VMELRHRFKSETAPEASYRLELKNGVLRWHGSDEGRPQTYAREPEAALFRRILSALVRYLPIESQL

Sequences:

>Translated_466_residues
MDVSITQTSTDKIKAGKSGLLLISDNYDAFAARVLAARGAVRTLDLMYYLWHDDHTGRLLLQEVVRAAQRGVRVRMLLDD
VNPRKSDAAYLALNNHPNIELRLFNPSGIRARGIMRGAEVLLRLFALTRRMHNKAWIADDSIAIVGGRNVGDAYFDAAET
NFRDLDVLVLGPAVQQTARIFQTFWACQDAKPIGELGAAAPGSHAPNFERSDAETESTLLSGIGDKGSTAEFIAASSDVH
WVDRVRVISDPPEKVRGWRPRGWLMKELLPIIQSARKRVEIVSPYFIPGKKGSKILGDLVDDGVQVAVLTNSLAATDVAA
VHGAYANYRKRLLRKGVQLFELQPFSRQPKISVFGSKGASLHTKAFSVDDRIGFVGSFNFDPRSVSLNSEMGVLFEDQKL
VMELRHRFKSETAPEASYRLELKNGVLRWHGSDEGRPQTYAREPEAALFRRILSALVRYLPIESQL
>Mature_466_residues
MDVSITQTSTDKIKAGKSGLLLISDNYDAFAARVLAARGAVRTLDLMYYLWHDDHTGRLLLQEVVRAAQRGVRVRMLLDD
VNPRKSDAAYLALNNHPNIELRLFNPSGIRARGIMRGAEVLLRLFALTRRMHNKAWIADDSIAIVGGRNVGDAYFDAAET
NFRDLDVLVLGPAVQQTARIFQTFWACQDAKPIGELGAAAPGSHAPNFERSDAETESTLLSGIGDKGSTAEFIAASSDVH
WVDRVRVISDPPEKVRGWRPRGWLMKELLPIIQSARKRVEIVSPYFIPGKKGSKILGDLVDDGVQVAVLTNSLAATDVAA
VHGAYANYRKRLLRKGVQLFELQPFSRQPKISVFGSKGASLHTKAFSVDDRIGFVGSFNFDPRSVSLNSEMGVLFEDQKL
VMELRHRFKSETAPEASYRLELKNGVLRWHGSDEGRPQTYAREPEAALFRRILSALVRYLPIESQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=459, Percent_Identity=39.2156862745098, Blast_Score=301, Evalue=5e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51794; Mature: 51794

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVSITQTSTDKIKAGKSGLLLISDNYDAFAARVLAARGAVRTLDLMYYLWHDDHTGRLL
CCCEEECCCCHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHEEEEEEEEEECCCCCHHH
LQEVVRAAQRGVRVRMLLDDVNPRKSDAAYLALNNHPNIELRLFNPSGIRARGIMRGAEV
HHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHH
LLRLFALTRRMHNKAWIADDSIAIVGGRNVGDAYFDAAETNFRDLDVLVLGPAVQQTARI
HHHHHHHHHHHCCCCEECCCCEEEEECCCCCHHHHHHCCCCCCCEEEEEECHHHHHHHHH
FQTFWACQDAKPIGELGAAAPGSHAPNFERSDAETESTLLSGIGDKGSTAEFIAASSDVH
HHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCC
WVDRVRVISDPPEKVRGWRPRGWLMKELLPIIQSARKRVEIVSPYFIPGKKGSKILGDLV
HHHEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHEEEECCEECCCCCCCHHHHHHH
DDGVQVAVLTNSLAATDVAAVHGAYANYRKRLLRKGVQLFELQPFSRQPKISVFGSKGAS
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCE
LHTKAFSVDDRIGFVGSFNFDPRSVSLNSEMGVLFEDQKLVMELRHRFKSETAPEASYRL
EEEEEEECCCCCCEEEECCCCCCEEECCCCCCEEECCHHHHHHHHHHHCCCCCCCCEEEE
ELKNGVLRWHGSDEGRPQTYAREPEAALFRRILSALVRYLPIESQL
EECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDVSITQTSTDKIKAGKSGLLLISDNYDAFAARVLAARGAVRTLDLMYYLWHDDHTGRLL
CCCEEECCCCHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHEEEEEEEEEECCCCCHHH
LQEVVRAAQRGVRVRMLLDDVNPRKSDAAYLALNNHPNIELRLFNPSGIRARGIMRGAEV
HHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHH
LLRLFALTRRMHNKAWIADDSIAIVGGRNVGDAYFDAAETNFRDLDVLVLGPAVQQTARI
HHHHHHHHHHHCCCCEECCCCEEEEECCCCCHHHHHHCCCCCCCEEEEEECHHHHHHHHH
FQTFWACQDAKPIGELGAAAPGSHAPNFERSDAETESTLLSGIGDKGSTAEFIAASSDVH
HHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCC
WVDRVRVISDPPEKVRGWRPRGWLMKELLPIIQSARKRVEIVSPYFIPGKKGSKILGDLV
HHHEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHEEEECCEECCCCCCCHHHHHHH
DDGVQVAVLTNSLAATDVAAVHGAYANYRKRLLRKGVQLFELQPFSRQPKISVFGSKGAS
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCE
LHTKAFSVDDRIGFVGSFNFDPRSVSLNSEMGVLFEDQKLVMELRHRFKSETAPEASYRL
EEEEEEECCCCCCEEEECCCCCCEEECCCCCCEEECCHHHHHHHHHHHCCCCCCCCEEEE
ELKNGVLRWHGSDEGRPQTYAREPEAALFRRILSALVRYLPIESQL
EECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]