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The map label for this gene is xerD [H]

Identifier: 13488493

GI number: 13488493

Start: 120145

End: 121242

Strand: Direct

Name: xerD [H]

Synonym: mlr9649

Alternate gene names: 13488493

Gene position: 120145-121242 (Clockwise)

Preceding gene: 13488489

Following gene: 13488501

Centisome position: 57.67

GC content: 64.57

Gene sequence:

>1098_bases
ATGGGCCGAGATACCGCTGAAGAGTCAAATGCGCATGCGCGGTTGACGGCCGCCAGGAATGATCCCTCCCCTGCCCTGCC
GGAGCAAAATCCTGTCGACCGGCTGCGCTTTCCCGGCCACCTCGAGCACCTCGCCGATCGCGCCCGCGACTATGTCGAGG
CGGCGAGTTCCGCCAATACCCGCCGCGCCTATAGCTCGGACTGGAAGCATTTTGCCGGCTGGTGCCGGCGCCAGGTCGTC
GAGATGTTTCCGCCAGATCCGCAGGTCGTCGGCCTCTACATCACCGCTTGCGCCTCCGGCAAGGCGACCGGCGACAAGAA
ACCTAACTCGGTGTCGACGATCGAACGCCGGCTTTCCTCCCTGACCTGGAACTATGCGCAGCGCGGCCAGCCGCTCGACC
GCAAGGACCGGCATATCGCCACCGTTATGGCCGGTATCCGCAAAACCCACGCGTTCCCTCCCCGGCAGAAGGAAGCGATC
CTGCCCAAGGATTTGATTGCCATGCTGGAGACGCTTCCCCGCGGCACCCTACGCGGTTTGCGCGACCGTGCCATGCTGCT
GCTCGGCTTCGCGGGCGGCCTGCGCCGCTCGGAAATCGTCGGCCTCGACGTGGCCAGGGATCAAACCGAGGATAGTCGTG
GCTGGGTCGAGATCCTTGAAAAAGGGCTGCTCGTCACCCTGCGCGGTAAGACTGGCTGGCGTGAGGTCGAGATCGGTCGC
GGCTCGTCCGACGCTACCTGCCCAGTGGTGGCGCTGGAGATTTGGCTGAAGCTTGCCCGCGTCGCCCACGGCCCGCTGTT
TCGACGCGTCACCGGCCAAGGCAAGACAGCGGGAACTGATCGGTTGAACGATCAGGAAGTCGCCCGCCTCGTCAAGCGTG
CGGCACTGGCTGCAGGCGTGCGAGGCGAATTGTCCGAAAGCGAGCGGGAAATGAAGTTTTCAGGCCACTCGCTGCGCGCT
GGTCTGGCCTCCTCGGCCGAGGTCGACGAGCGATATGTGCAAAAACAGCTTGGCCATGCCTCGGCCGAGATGACCCGACG
CTATCAGCGCCGGCGCGACCGGTTCAGAGTCAACCTCACCAAGGCAAGCGGTTTGTAG

Upstream 100 bases:

>100_bases
CCAATCGTCCCCGACATGATATGGTGCGAATCATAGTTGAGGATTCGCGAGATTGCCCGAACAAGACGACCTGCCTGATA
TCGTGGAGATCGTCCACGCC

Downstream 100 bases:

>100_bases
GCCCTGACAAGCCCCCTCCCCTGCCCTTCCACGAGCCCACTATGACCAAGACAACTGGTCCTTCGGCAACCGGCCGCTCG
GATCGAAGACAGTTACTTTA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MGRDTAEESNAHARLTAARNDPSPALPEQNPVDRLRFPGHLEHLADRARDYVEAASSANTRRAYSSDWKHFAGWCRRQVV
EMFPPDPQVVGLYITACASGKATGDKKPNSVSTIERRLSSLTWNYAQRGQPLDRKDRHIATVMAGIRKTHAFPPRQKEAI
LPKDLIAMLETLPRGTLRGLRDRAMLLLGFAGGLRRSEIVGLDVARDQTEDSRGWVEILEKGLLVTLRGKTGWREVEIGR
GSSDATCPVVALEIWLKLARVAHGPLFRRVTGQGKTAGTDRLNDQEVARLVKRAALAAGVRGELSESEREMKFSGHSLRA
GLASSAEVDERYVQKQLGHASAEMTRRYQRRRDRFRVNLTKASGL

Sequences:

>Translated_365_residues
MGRDTAEESNAHARLTAARNDPSPALPEQNPVDRLRFPGHLEHLADRARDYVEAASSANTRRAYSSDWKHFAGWCRRQVV
EMFPPDPQVVGLYITACASGKATGDKKPNSVSTIERRLSSLTWNYAQRGQPLDRKDRHIATVMAGIRKTHAFPPRQKEAI
LPKDLIAMLETLPRGTLRGLRDRAMLLLGFAGGLRRSEIVGLDVARDQTEDSRGWVEILEKGLLVTLRGKTGWREVEIGR
GSSDATCPVVALEIWLKLARVAHGPLFRRVTGQGKTAGTDRLNDQEVARLVKRAALAAGVRGELSESEREMKFSGHSLRA
GLASSAEVDERYVQKQLGHASAEMTRRYQRRRDRFRVNLTKASGL
>Mature_364_residues
GRDTAEESNAHARLTAARNDPSPALPEQNPVDRLRFPGHLEHLADRARDYVEAASSANTRRAYSSDWKHFAGWCRRQVVE
MFPPDPQVVGLYITACASGKATGDKKPNSVSTIERRLSSLTWNYAQRGQPLDRKDRHIATVMAGIRKTHAFPPRQKEAIL
PKDLIAMLETLPRGTLRGLRDRAMLLLGFAGGLRRSEIVGLDVARDQTEDSRGWVEILEKGLLVTLRGKTGWREVEIGRG
SSDATCPVVALEIWLKLARVAHGPLFRRVTGQGKTAGTDRLNDQEVARLVKRAALAAGVRGELSESEREMKFSGHSLRAG
LASSAEVDERYVQKQLGHASAEMTRRYQRRRDRFRVNLTKASGL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40644; Mature: 40513

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRDTAEESNAHARLTAARNDPSPALPEQNPVDRLRFPGHLEHLADRARDYVEAASSANT
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCH
RRAYSSDWKHFAGWCRRQVVEMFPPDPQVVGLYITACASGKATGDKKPNSVSTIERRLSS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
LTWNYAQRGQPLDRKDRHIATVMAGIRKTHAFPPRQKEAILPKDLIAMLETLPRGTLRGL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHH
RDRAMLLLGFAGGLRRSEIVGLDVARDQTEDSRGWVEILEKGLLVTLRGKTGWREVEIGR
HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEECC
GSSDATCPVVALEIWLKLARVAHGPLFRRVTGQGKTAGTDRLNDQEVARLVKRAALAAGV
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
RGELSESEREMKFSGHSLRAGLASSAEVDERYVQKQLGHASAEMTRRYQRRRDRFRVNLT
CCCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEE
KASGL
CCCCC
>Mature Secondary Structure 
GRDTAEESNAHARLTAARNDPSPALPEQNPVDRLRFPGHLEHLADRARDYVEAASSANT
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCH
RRAYSSDWKHFAGWCRRQVVEMFPPDPQVVGLYITACASGKATGDKKPNSVSTIERRLSS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
LTWNYAQRGQPLDRKDRHIATVMAGIRKTHAFPPRQKEAILPKDLIAMLETLPRGTLRGL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHH
RDRAMLLLGFAGGLRRSEIVGLDVARDQTEDSRGWVEILEKGLLVTLRGKTGWREVEIGR
HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEECC
GSSDATCPVVALEIWLKLARVAHGPLFRRVTGQGKTAGTDRLNDQEVARLVKRAALAAGV
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
RGELSESEREMKFSGHSLRAGLASSAEVDERYVQKQLGHASAEMTRRYQRRRDRFRVNLT
CCCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEE
KASGL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]