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The map label for this gene is scpB [H]

Identifier: 13488490

GI number: 13488490

Start: 116871

End: 117548

Strand: Reverse

Name: scpB [H]

Synonym: mll9646

Alternate gene names: 13488490

Gene position: 117548-116871 (Counterclockwise)

Preceding gene: 13488491

Following gene: 13488486

Centisome position: 56.43

GC content: 64.31

Gene sequence:

>678_bases
ATGAGCGAAGCCTTTGCCCGCCACAAGCCGAACGATCAGCCGGCGCTGCTTGACACCGAGCTCGATCACCTGCCGCCAGA
ACTGCGCTGGCGTGAGTGGATGGGCCGGGTGGAGGCGGTGATCTTTGCGGCAAATGAACCGGTGCCGCGCGAGGTGCTGG
CGCGCGTCGTCAGCAAAAGCTGCAATCTCGACCTGGTCATCGACGACATCCGCGCCGAGCTCGCAGGCCGCCCCTACGAG
CTCGTGTCCGTTGCCGGCGGCTGGCAGCACCGGACTAAAAAGGCCTTTGGAGACATCATCCACGCCGCCTTCGGCACCGC
CGGGAAGGCGACAAAAGAACTGTCGCAGTCGGAGGCGCTCGTGCTGATGTGCATTGCCTATTTCCAGCCGATCACGCGTG
GCGAGCTGTCTGCCTTCTTCGGCAAGGAGGTGTCGCGCGATCTGATCGGCGTGCTACGGGGACAGGAGCTGATCGCCTCG
GGGCCGCGGAGCCCGAAGCCCGGAGCCCCCTACACCTATGTGACGACGAAGACTTTCTTGTCGCAGTTCGGGCTCGAGAC
GCTGCGCCAGCTGCCGGATTTCGAGGCGCTCGAGGACGCCGGGCTGCTGTCGAAGGAAAAGCTGCTTGCTGGCGACATCA
TGTCGGAACTGGTCGGCGACCGAGAGGGGCCTGATTAA

Upstream 100 bases:

>100_bases
CGCGCTTTGCATCGCGGCGGCTGTTCGAGCGGCTGCAGCAACTGGAAGCCGTGCGCGAGCTCTCCGGCCGTCCCACCTTC
CGGCTGTTCGGGTTGTAGCG

Downstream 100 bases:

>100_bases
CAACGGGCGAATAGTTTCCGATCGAGGCTTCGCTTAGCGACCAGGACTTCCCGCGCCTATTTCACGGGTTCGGATTGGAT
CGTCTCTATGGCAGCCACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MSEAFARHKPNDQPALLDTELDHLPPELRWREWMGRVEAVIFAANEPVPREVLARVVSKSCNLDLVIDDIRAELAGRPYE
LVSVAGGWQHRTKKAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGVLRGQELIAS
GPRSPKPGAPYTYVTTKTFLSQFGLETLRQLPDFEALEDAGLLSKEKLLAGDIMSELVGDREGPD

Sequences:

>Translated_225_residues
MSEAFARHKPNDQPALLDTELDHLPPELRWREWMGRVEAVIFAANEPVPREVLARVVSKSCNLDLVIDDIRAELAGRPYE
LVSVAGGWQHRTKKAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGVLRGQELIAS
GPRSPKPGAPYTYVTTKTFLSQFGLETLRQLPDFEALEDAGLLSKEKLLAGDIMSELVGDREGPD
>Mature_224_residues
SEAFARHKPNDQPALLDTELDHLPPELRWREWMGRVEAVIFAANEPVPREVLARVVSKSCNLDLVIDDIRAELAGRPYEL
VSVAGGWQHRTKKAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGVLRGQELIASG
PRSPKPGAPYTYVTTKTFLSQFGLETLRQLPDFEALEDAGLLSKEKLLAGDIMSELVGDREGPD

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 24791; Mature: 24659

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAFARHKPNDQPALLDTELDHLPPELRWREWMGRVEAVIFAANEPVPREVLARVVSKS
CCCCCCCCCCCCCCCEECCHHHHCCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCC
CNLDLVIDDIRAELAGRPYELVSVAGGWQHRTKKAFGDIIHAAFGTAGKATKELSQSEAL
CCCEEEHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VLMCIAYFQPITRGELSAFFGKEVSRDLIGVLRGQELIASGPRSPKPGAPYTYVTTKTFL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCEEEHHHHHHH
SQFGLETLRQLPDFEALEDAGLLSKEKLLAGDIMSELVGDREGPD
HHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SEAFARHKPNDQPALLDTELDHLPPELRWREWMGRVEAVIFAANEPVPREVLARVVSKS
CCCCCCCCCCCCCCEECCHHHHCCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCC
CNLDLVIDDIRAELAGRPYELVSVAGGWQHRTKKAFGDIIHAAFGTAGKATKELSQSEAL
CCCEEEHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VLMCIAYFQPITRGELSAFFGKEVSRDLIGVLRGQELIASGPRSPKPGAPYTYVTTKTFL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCEEEHHHHHHH
SQFGLETLRQLPDFEALEDAGLLSKEKLLAGDIMSELVGDREGPD
HHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377 [H]