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The map label for this gene is ydeP [H]

Identifier: 13488477

GI number: 13488477

Start: 99874

End: 102267

Strand: Reverse

Name: ydeP [H]

Synonym: mll9633

Alternate gene names: 13488477

Gene position: 102267-99874 (Counterclockwise)

Preceding gene: 13488478

Following gene: 13488476

Centisome position: 49.09

GC content: 59.27

Gene sequence:

>2394_bases
ATGACGTCAAAGACACGGTCCCCAACCATCCGACCATATGAGGGACCCGCTGGCGGCTGGGGGTCGGCGAAGTCCGTCGC
AGCGATTATCGCGAGAGAACATGTCCTCTTGCGGGACCCAAAGCTCCTTTCGACCCAGAACAAGCCTGAAGGGTATATGT
GCGTCAGCTGCGCCTGGGCAAAGCCCGCTCAGCCACATCCGCTTGAGTTCTGCGAAAATGGCGCCAAGGCCACAGCGTGG
GAGACGACGTCGCGTCGAGCCGGTCCGGCATTTTTTGCCAATCACACGCTGAGCGAACTGGAGACCTGGTCCGATCACGA
CCTGGAGGAACAAGGCCGCTTGACGCATCCCATGCGTTGGGATGCAGCCAGCGACAAATACATTCCGGTCGCCTGGTCCG
ATGCCTTTGATGAGATTGGGAGAGAGTTGCGTTCCCTCGATCCTCATCAGGTTGATCTCTACACATCCGGCCGTGCCTCG
CTTGAGACCAGCTACATGTACCAGCTGTTCGCGCGCATGTACGGCAGCAACAATTTGCCTGACAGCTCCAACATGTGTCA
CGAGGGTTCCTCCGTGGCGCTCCCGGAAAGCATCGGTTCATCCGTCGGGACGGCGATCCTGTCCGATTTTGAGAACACCG
ACTGCATTTTCTACATCGCGCAGAACGTCGGAACCTCGTCGCCTCGGATGCTTCATGATCTCCAGGATGCCGTCAACCGG
GGCGTCAAGATCGTCACCTTCAACCTGCTGCGCGAACGGGGCCTGGAGCGCTTTGTCAATCCGCAGTCGCCACAGATGCT
GACCGGGAAAGAGACAAAGATCTCGTCGGAATATTATCAGGTCAGGAGCGGGGGCGATATCGCGGCACTGTTCGGGGTAT
GCAAGGCGCTAATTGAAGCTGACGATGCCCTCAAGGCATCAGGCGCAAGCCGCGTGGCGGGGCAGGATGGGAAGCCGAAG
GACCAGGACAATGCCGCGATGGTCGCCTTTGCGGCCTCGATGGCCTCGGCAGACAACAAGCACGTGCTCGATCACGATTT
TATCCATGAACACACCACTGGTTTTGAGGAATTTGCTCAGGCCGCGCGAGCCCATCAGTGGGACGAACTCGAACGCGTCT
CGGGGCTGAGCCGCGCGGAGATGATGCAGGCTGCCACGACCTACGCGAACGCCAGCGCCGTGATGATGGTTTACGGCATG
GGCCTGACGCAGCACCTCATGGGTGTCGAGAACGTTCACATGGTCTGCAACCTGGCGCTGCTGCGCGGCAATATCGGCAA
GCCCGGAGCAAATATCTGCGCCGTGCGGGGCCATTCCAACGTGCAGGGCCAGCGCACCGTCGGGATCACCGAGAAACCCG
GGCTGGCGCCGCTGGACAAGCTTTCCCAGCTCTACGGCTTTGAGCCGCCGACATGGACGGGCCGCTCGACGGTCGAAACC
TGCGAAGCGATTGTCAACGGCCAGTGCCGCGCGTTCATCAGCCTGGGCGGGAATTTCCTGAAAGCCATACCCGACACGGC
CGCAATGGAAGAGGGATGGCGCAAGCTGCATCTGAGCGTGCAGATCGCGACAAAGCTCAATCGCAGCCATGTTCTGCACG
GTGAGGTCGCCTATCTGCTGCCGTGCCTTGGGCGCATTGAAGTCGATCAGCAGGCAAGCGGTCCCCAGGCGGTGTCGATT
GAAAGTTCCATTGCTCATTTCCATGGCTCTCGCGGCAAGGCAAAACCGGCCGGCGCCGAGCTTCTCTCCGAACCTGCCAT
CGTTGCTGGCATCGCGAAGGCTACGCTCGGAGAAACGAAGGTTCCGTGGGACGCCTGGGTCGGGAACTATGCGCAGATAC
GAGACGCCATCGAGCGCACGTACCCGGAGACGTTCAAGGACTTCAACAAGCGGCTTTTTCAACCTGGCGGATTTGCCAGG
CCTGTGCCCGCGCGAGAACGCAAGTGGGTGACGAAAACGGGAAAGGCCAACTTCATCACGCCGCACAGATTGTTTCCGGA
GTTCTCCACATCGGGGAGAGCCGACGTCCTGCATCTTTCGACACTGCGATCCAACGACCAGTTCAACACCACGATCTACG
GCTACAGCGATCGATTTCGGGGCGTTGAAGGCACCCGTCGGGTCGTGTTCATGAACGGCGAGGATATTAGCCGGCTGGGC
TTCGTCGATGGCGAGCACATCGACGTGACGACGGCGATCGACGATAACAACATTCGCAAAGTCACTAACCTGAGGATCGT
GCAGTACAACATTCCGAAGGGATGCTGTGCGGCGTATTACCCCGAGGCAAACCCGCTATTCCCTTTCGCTCACCATGACC
CGAAGGCAAAAACACCTTCCTATAAACTTCTGCCAGTGCGCCTTACCCGATCGAGCATTAATCCCGATGGCTAA

Upstream 100 bases:

>100_bases
CTGGCCGGCGATTGGACGTTCGGCACGTCCACGAATGAGGTCGTGACGCGCCAGTGAAGCGAGGCCGAACGCGGGCCTCG
GCTACGCGAGCGAGGCGGAA

Downstream 100 bases:

>100_bases
CCAACTTATGGGCTGAGGGCCCCTTGAAAGACACAAGAAACCCAAACCGGGCATTCGTGGCGGCCGCGTTTCTGCTGATC
GGTGTCGGTGCCTGGTTGGG

Product: formate dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 797; Mature: 796

Protein sequence:

>797_residues
MTSKTRSPTIRPYEGPAGGWGSAKSVAAIIAREHVLLRDPKLLSTQNKPEGYMCVSCAWAKPAQPHPLEFCENGAKATAW
ETTSRRAGPAFFANHTLSELETWSDHDLEEQGRLTHPMRWDAASDKYIPVAWSDAFDEIGRELRSLDPHQVDLYTSGRAS
LETSYMYQLFARMYGSNNLPDSSNMCHEGSSVALPESIGSSVGTAILSDFENTDCIFYIAQNVGTSSPRMLHDLQDAVNR
GVKIVTFNLLRERGLERFVNPQSPQMLTGKETKISSEYYQVRSGGDIAALFGVCKALIEADDALKASGASRVAGQDGKPK
DQDNAAMVAFAASMASADNKHVLDHDFIHEHTTGFEEFAQAARAHQWDELERVSGLSRAEMMQAATTYANASAVMMVYGM
GLTQHLMGVENVHMVCNLALLRGNIGKPGANICAVRGHSNVQGQRTVGITEKPGLAPLDKLSQLYGFEPPTWTGRSTVET
CEAIVNGQCRAFISLGGNFLKAIPDTAAMEEGWRKLHLSVQIATKLNRSHVLHGEVAYLLPCLGRIEVDQQASGPQAVSI
ESSIAHFHGSRGKAKPAGAELLSEPAIVAGIAKATLGETKVPWDAWVGNYAQIRDAIERTYPETFKDFNKRLFQPGGFAR
PVPARERKWVTKTGKANFITPHRLFPEFSTSGRADVLHLSTLRSNDQFNTTIYGYSDRFRGVEGTRRVVFMNGEDISRLG
FVDGEHIDVTTAIDDNNIRKVTNLRIVQYNIPKGCCAAYYPEANPLFPFAHHDPKAKTPSYKLLPVRLTRSSINPDG

Sequences:

>Translated_797_residues
MTSKTRSPTIRPYEGPAGGWGSAKSVAAIIAREHVLLRDPKLLSTQNKPEGYMCVSCAWAKPAQPHPLEFCENGAKATAW
ETTSRRAGPAFFANHTLSELETWSDHDLEEQGRLTHPMRWDAASDKYIPVAWSDAFDEIGRELRSLDPHQVDLYTSGRAS
LETSYMYQLFARMYGSNNLPDSSNMCHEGSSVALPESIGSSVGTAILSDFENTDCIFYIAQNVGTSSPRMLHDLQDAVNR
GVKIVTFNLLRERGLERFVNPQSPQMLTGKETKISSEYYQVRSGGDIAALFGVCKALIEADDALKASGASRVAGQDGKPK
DQDNAAMVAFAASMASADNKHVLDHDFIHEHTTGFEEFAQAARAHQWDELERVSGLSRAEMMQAATTYANASAVMMVYGM
GLTQHLMGVENVHMVCNLALLRGNIGKPGANICAVRGHSNVQGQRTVGITEKPGLAPLDKLSQLYGFEPPTWTGRSTVET
CEAIVNGQCRAFISLGGNFLKAIPDTAAMEEGWRKLHLSVQIATKLNRSHVLHGEVAYLLPCLGRIEVDQQASGPQAVSI
ESSIAHFHGSRGKAKPAGAELLSEPAIVAGIAKATLGETKVPWDAWVGNYAQIRDAIERTYPETFKDFNKRLFQPGGFAR
PVPARERKWVTKTGKANFITPHRLFPEFSTSGRADVLHLSTLRSNDQFNTTIYGYSDRFRGVEGTRRVVFMNGEDISRLG
FVDGEHIDVTTAIDDNNIRKVTNLRIVQYNIPKGCCAAYYPEANPLFPFAHHDPKAKTPSYKLLPVRLTRSSINPDG
>Mature_796_residues
TSKTRSPTIRPYEGPAGGWGSAKSVAAIIAREHVLLRDPKLLSTQNKPEGYMCVSCAWAKPAQPHPLEFCENGAKATAWE
TTSRRAGPAFFANHTLSELETWSDHDLEEQGRLTHPMRWDAASDKYIPVAWSDAFDEIGRELRSLDPHQVDLYTSGRASL
ETSYMYQLFARMYGSNNLPDSSNMCHEGSSVALPESIGSSVGTAILSDFENTDCIFYIAQNVGTSSPRMLHDLQDAVNRG
VKIVTFNLLRERGLERFVNPQSPQMLTGKETKISSEYYQVRSGGDIAALFGVCKALIEADDALKASGASRVAGQDGKPKD
QDNAAMVAFAASMASADNKHVLDHDFIHEHTTGFEEFAQAARAHQWDELERVSGLSRAEMMQAATTYANASAVMMVYGMG
LTQHLMGVENVHMVCNLALLRGNIGKPGANICAVRGHSNVQGQRTVGITEKPGLAPLDKLSQLYGFEPPTWTGRSTVETC
EAIVNGQCRAFISLGGNFLKAIPDTAAMEEGWRKLHLSVQIATKLNRSHVLHGEVAYLLPCLGRIEVDQQASGPQAVSIE
SSIAHFHGSRGKAKPAGAELLSEPAIVAGIAKATLGETKVPWDAWVGNYAQIRDAIERTYPETFKDFNKRLFQPGGFARP
VPARERKWVTKTGKANFITPHRLFPEFSTSGRADVLHLSTLRSNDQFNTTIYGYSDRFRGVEGTRRVVFMNGEDISRLGF
VDGEHIDVTTAIDDNNIRKVTNLRIVQYNIPKGCCAAYYPEANPLFPFAHHDPKAKTPSYKLLPVRLTRSSINPDG

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=787, Percent_Identity=45.997458703939, Blast_Score=702, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=423, Percent_Identity=25.531914893617, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI3868719, Length=401, Percent_Identity=22.1945137157107, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI3868720, Length=450, Percent_Identity=21.5555555555556, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 87535; Mature: 87403

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKTRSPTIRPYEGPAGGWGSAKSVAAIIAREHVLLRDPKLLSTQNKPEGYMCVSCAWA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCHHHCCCCCCCCEEEEEEECC
KPAQPHPLEFCENGAKATAWETTSRRAGPAFFANHTLSELETWSDHDLEEQGRLTHPMRW
CCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHCCHHHHHCCCCCCHHHCCCCCCCEEC
DAASDKYIPVAWSDAFDEIGRELRSLDPHQVDLYTSGRASLETSYMYQLFARMYGSNNLP
CCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCC
DSSNMCHEGSSVALPESIGSSVGTAILSDFENTDCIFYIAQNVGTSSPRMLHDLQDAVNR
CCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHC
GVKIVTFNLLRERGLERFVNPQSPQMLTGKETKISSEYYQVRSGGDIAALFGVCKALIEA
CEEEEEHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHC
DDALKASGASRVAGQDGKPKDQDNAAMVAFAASMASADNKHVLDHDFIHEHTTGFEEFAQ
CHHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHH
AARAHQWDELERVSGLSRAEMMQAATTYANASAVMMVYGMGLTQHLMGVENVHMVCNLAL
HHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEHHCCHHHHHHCHHHHHHHHHHHH
LRGNIGKPGANICAVRGHSNVQGQRTVGITEKPGLAPLDKLSQLYGFEPPTWTGRSTVET
HHCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
CEAIVNGQCRAFISLGGNFLKAIPDTAAMEEGWRKLHLSVQIATKLNRSHVLHGEVAYLL
HHHHHCCCCEEEEECCCHHHHHCCCHHHHHHCCCEEEEEEEEEECCCCCEEECCHHHHHH
PCLGRIEVDQQASGPQAVSIESSIAHFHGSRGKAKPAGAELLSEPAIVAGIAKATLGETK
HCCCCEEECCCCCCCCEEEHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCC
VPWDAWVGNYAQIRDAIERTYPETFKDFNKRLFQPGGFARPVPARERKWVTKTGKANFIT
CCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHCCCEECCCCCCCCC
PHRLFPEFSTSGRADVLHLSTLRSNDQFNTTIYGYSDRFRGVEGTRRVVFMNGEDISRLG
HHHHCCCCCCCCCCEEEEEEECCCCCCCCEEEEECHHHCCCCCCCCEEEEECCCCCHHHC
FVDGEHIDVTTAIDDNNIRKVTNLRIVQYNIPKGCCAAYYPEANPLFPFAHHDPKAKTPS
CCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCHHEEECCCCCCCCCCCCCCCCCCCCC
YKLLPVRLTRSSINPDG
EEEEEEEEECCCCCCCC
>Mature Secondary Structure 
TSKTRSPTIRPYEGPAGGWGSAKSVAAIIAREHVLLRDPKLLSTQNKPEGYMCVSCAWA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCHHHCCCCCCCCEEEEEEECC
KPAQPHPLEFCENGAKATAWETTSRRAGPAFFANHTLSELETWSDHDLEEQGRLTHPMRW
CCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHCCHHHHHCCCCCCHHHCCCCCCCEEC
DAASDKYIPVAWSDAFDEIGRELRSLDPHQVDLYTSGRASLETSYMYQLFARMYGSNNLP
CCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCC
DSSNMCHEGSSVALPESIGSSVGTAILSDFENTDCIFYIAQNVGTSSPRMLHDLQDAVNR
CCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHC
GVKIVTFNLLRERGLERFVNPQSPQMLTGKETKISSEYYQVRSGGDIAALFGVCKALIEA
CEEEEEHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHC
DDALKASGASRVAGQDGKPKDQDNAAMVAFAASMASADNKHVLDHDFIHEHTTGFEEFAQ
CHHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHH
AARAHQWDELERVSGLSRAEMMQAATTYANASAVMMVYGMGLTQHLMGVENVHMVCNLAL
HHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEHHCCHHHHHHCHHHHHHHHHHHH
LRGNIGKPGANICAVRGHSNVQGQRTVGITEKPGLAPLDKLSQLYGFEPPTWTGRSTVET
HHCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
CEAIVNGQCRAFISLGGNFLKAIPDTAAMEEGWRKLHLSVQIATKLNRSHVLHGEVAYLL
HHHHHCCCCEEEEECCCHHHHHCCCHHHHHHCCCEEEEEEEEEECCCCCEEECCHHHHHH
PCLGRIEVDQQASGPQAVSIESSIAHFHGSRGKAKPAGAELLSEPAIVAGIAKATLGETK
HCCCCEEECCCCCCCCEEEHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCC
VPWDAWVGNYAQIRDAIERTYPETFKDFNKRLFQPGGFARPVPARERKWVTKTGKANFIT
CCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHCCCEECCCCCCCCC
PHRLFPEFSTSGRADVLHLSTLRSNDQFNTTIYGYSDRFRGVEGTRRVVFMNGEDISRLG
HHHHCCCCCCCCCCEEEEEEECCCCCCCCEEEEECHHHCCCCCCCCEEEEECCCCCHHHC
FVDGEHIDVTTAIDDNNIRKVTNLRIVQYNIPKGCCAAYYPEANPLFPFAHHDPKAKTPS
CCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCHHEEECCCCCCCCCCCCCCCCCCCCC
YKLLPVRLTRSSINPDG
EEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]