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The map label for this gene is ctaC [H]

Identifier: 13488475

GI number: 13488475

Start: 98268

End: 99260

Strand: Reverse

Name: ctaC [H]

Synonym: mll9631

Alternate gene names: 13488475

Gene position: 99260-98268 (Counterclockwise)

Preceding gene: 13488476

Following gene: 13488474

Centisome position: 47.65

GC content: 61.93

Gene sequence:

>993_bases
GTGAGAGCCCCTCGCATTGGTCTGTTGTCGACTGGTGTTCTGGTGTCAGGCTGCAGTGGTAGCCAGTCTGCGCTTAACCC
CTACGGGGCTCCCGCCGTCCATGTCGAGCATCTGATCGTCGGGATAGTTGTCCTGTCCGGAGTGATCTGGTTGCTGGTGA
TGGTCATGCTTGCCCTGGCGCTCAGGCGGGGGCGTCGGGCCGAGACGGAAGGCCAGACATCCGAAGGTCGGCTCACAATG
ACAGTCTCGGCCGCAGTCGCGGTGACGGTGGCCATTATCGCCGGCATGACAATCGCCAGCTTCTACACCACCCGCAGCAT
GGGGGTCCCGCAAAGTGCTGCCCTGACGATCACCGTGAGAGCACAGCAATGGTGGTGGCAGGTCATCTACGCCGGTTCCG
ACGGCACGCCCACCTTCCAGACCGCCAACGAAATCCATATCCCCGTCGGTCAAGATGTCCGGCTTCAGCTTGAAAGCACG
GACGTCATCCATTCGTTCTGGGTTCCCAGTCTGGCCGGGAAGCAGGATCTCGTTCCGGGTCGACCAAACGATTTGCTGCT
TCGGGCGGAAAAGCCTGGCATCTATCGCGGGCAATGCGCCGAATTCTGCGGCCTGCAGCATAGTCATATGGCGGTTATGG
TCGTCGCGGAGGCTCCGGCCGATTACGCGCGCTGGATCACATCACAGCGCGCCGATGCGAAGATGCCGGCCGATCCCGAT
GCCGCCTCGGGGCAGGCGGCCTTTCTGGCAAAGCCCTGTGCGGCCTGCCATACGATCCGAGGAACGCAAGCCACCGGTAC
GACGGGACCCGACCTCACGCATATCGGCAGTCGTCAGACAATCGCCGCCGGATTGCTGGAGACCACGCGCGGTTCGCTGG
CGGCCTGGATTGCAGACCCGCAGACGCTGAAGCCGGGGAACAATATGCCGATGGTCCCGCTGACCAGCATCGAGCTCCAG
AATATCTGCGCCTATATGGATAGTCTCAAATGA

Upstream 100 bases:

>100_bases
ACGATGACAAGCAGACCCGCCCGGCCGAGAACCGCGGCCCTGCGAAGATTCTCTTCGATGAGGGCCCGGCGGGTGTCCAT
CCAGATCAGGGACCTTCGCC

Downstream 100 bases:

>100_bases
GTGCAGCAGCGGATCGCGAAGGGGTTCGGGACACCGGGATGGAAGCCGGCGAACTCGATCGTCGACTTGCCGCGACCTGG
TCAACACCCCCTGGCCTGTG

Product: cytochrome oxidase subunit II

Products: NA

Alternate protein names: Cytochrome aa3 subunit 2; Cytochrome c oxidase polypeptide II; Oxidase aa(3) subunit 2 [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MRAPRIGLLSTGVLVSGCSGSQSALNPYGAPAVHVEHLIVGIVVLSGVIWLLVMVMLALALRRGRRAETEGQTSEGRLTM
TVSAAVAVTVAIIAGMTIASFYTTRSMGVPQSAALTITVRAQQWWWQVIYAGSDGTPTFQTANEIHIPVGQDVRLQLEST
DVIHSFWVPSLAGKQDLVPGRPNDLLLRAEKPGIYRGQCAEFCGLQHSHMAVMVVAEAPADYARWITSQRADAKMPADPD
AASGQAAFLAKPCAACHTIRGTQATGTTGPDLTHIGSRQTIAAGLLETTRGSLAAWIADPQTLKPGNNMPMVPLTSIELQ
NICAYMDSLK

Sequences:

>Translated_330_residues
MRAPRIGLLSTGVLVSGCSGSQSALNPYGAPAVHVEHLIVGIVVLSGVIWLLVMVMLALALRRGRRAETEGQTSEGRLTM
TVSAAVAVTVAIIAGMTIASFYTTRSMGVPQSAALTITVRAQQWWWQVIYAGSDGTPTFQTANEIHIPVGQDVRLQLEST
DVIHSFWVPSLAGKQDLVPGRPNDLLLRAEKPGIYRGQCAEFCGLQHSHMAVMVVAEAPADYARWITSQRADAKMPADPD
AASGQAAFLAKPCAACHTIRGTQATGTTGPDLTHIGSRQTIAAGLLETTRGSLAAWIADPQTLKPGNNMPMVPLTSIELQ
NICAYMDSLK
>Mature_330_residues
MRAPRIGLLSTGVLVSGCSGSQSALNPYGAPAVHVEHLIVGIVVLSGVIWLLVMVMLALALRRGRRAETEGQTSEGRLTM
TVSAAVAVTVAIIAGMTIASFYTTRSMGVPQSAALTITVRAQQWWWQVIYAGSDGTPTFQTANEIHIPVGQDVRLQLEST
DVIHSFWVPSLAGKQDLVPGRPNDLLLRAEKPGIYRGQCAEFCGLQHSHMAVMVVAEAPADYARWITSQRADAKMPADPD
AASGQAAFLAKPCAACHTIRGTQATGTTGPDLTHIGSRQTIAAGLLETTRGSLAAWIADPQTLKPGNNMPMVPLTSIELQ
NICAYMDSLK

Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Homo sapiens, GI251831110, Length=145, Percent_Identity=31.7241379310345, Blast_Score=82, Evalue=6e-16,
Organism=Escherichia coli, GI1786635, Length=276, Percent_Identity=25.3623188405797, Blast_Score=66, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6226540, Length=237, Percent_Identity=26.1603375527426, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001505
- InterPro:   IPR008972
- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR014222
- InterPro:   IPR015964
- InterPro:   IPR002429
- InterPro:   IPR011759 [H]

Pfam domain/function: PF00116 COX2; PF02790 COX2_TM; PF00034 Cytochrom_C [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 35080; Mature: 35080

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00078 COX2 ; PS50857 COX2_CUA ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPRIGLLSTGVLVSGCSGSQSALNPYGAPAVHVEHLIVGIVVLSGVIWLLVMVMLALA
CCCCCCCEEECCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRGRRAETEGQTSEGRLTMTVSAAVAVTVAIIAGMTIASFYTTRSMGVPQSAALTITVR
HHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
AQQWWWQVIYAGSDGTPTFQTANEIHIPVGQDVRLQLESTDVIHSFWVPSLAGKQDLVPG
ECCEEEEEEEECCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCC
RPNDLLLRAEKPGIYRGQCAEFCGLQHSHMAVMVVAEAPADYARWITSQRADAKMPADPD
CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCC
AASGQAAFLAKPCAACHTIRGTQATGTTGPDLTHIGSRQTIAAGLLETTRGSLAAWIADP
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEECCC
QTLKPGNNMPMVPLTSIELQNICAYMDSLK
CEECCCCCCCCCEECHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRAPRIGLLSTGVLVSGCSGSQSALNPYGAPAVHVEHLIVGIVVLSGVIWLLVMVMLALA
CCCCCCCEEECCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRGRRAETEGQTSEGRLTMTVSAAVAVTVAIIAGMTIASFYTTRSMGVPQSAALTITVR
HHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
AQQWWWQVIYAGSDGTPTFQTANEIHIPVGQDVRLQLESTDVIHSFWVPSLAGKQDLVPG
ECCEEEEEEEECCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCC
RPNDLLLRAEKPGIYRGQCAEFCGLQHSHMAVMVVAEAPADYARWITSQRADAKMPADPD
CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCC
AASGQAAFLAKPCAACHTIRGTQATGTTGPDLTHIGSRQTIAAGLLETTRGSLAAWIADP
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEECCC
QTLKPGNNMPMVPLTSIELQNICAYMDSLK
CEECCCCCCCCCEECHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7678007 [H]