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The map label for this gene is ligD

Identifier: 13488470

GI number: 13488470

Start: 90698

End: 93349

Strand: Reverse

Name: ligD

Synonym: mll9625

Alternate gene names: NA

Gene position: 93349-90698 (Counterclockwise)

Preceding gene: 13488471

Following gene: 13488465

Centisome position: 44.81

GC content: 62.41

Gene sequence:

>2652_bases
ATGGCGAGCGACAAGCTAACAACATACAAGGCCAAGCGCGATTTCAAGAAGACGCAGGAGCCGAGCGGTCAAGGGTCGGT
CAAGCCATCCAACCGCCGTCGTTTCGTCATTCAGAAACATGACGCGACGCGGCTGCATTACGATCTGCGACTTGAGCTCG
GCGGCGTTTTCAAATCCTGGGCCGTGACGCGCGGTCCCTCTCTCGATCCTCATGACAAGAGGCTCGCGGTCGAGGTGGAA
GATCATCCGCTCGACTACGGGGATTTCGAAGGGACGATTCCAAAAGGCCAGTATGGCGGCGGCACGGTCATGCTGTGGGA
CCGCGGCTATTGGGAGCCCGAGGGAAAGAACAGCCCCGAGCAGGCGCTGGCCAAGGGCGATTTCAAATTCACGCTCGAAG
GGGAGCGGCTGCATGGCAGTTTCGTGCTGGTGAGGATGGCCAACGACCGCGAACGCGGCAAGCGCACCAACTGGCTGCTG
ATCAAACATCGCGACGAATATGCCGTCGAGACAAACGGGGCTGCAATCCTCGACAAGAATGACACCTCTGTCGCATCCGG
ACGCAAGATGGAGGCAATTGCTGCCGGCAAGGGCCGCAGCCCGAAACCCTTCATGCTGCAAGGCGGCAAGGCCGAGGCAG
ATGCGGTGTGGGACAGTCGTACAGGCTTGGCGGCGCAGGAACGGAAAACAAACATTCGCGCAAAAAGGAAGAAGCACGGG
ACTGTCACTGCCGCCGATCTTCCCGACTTCATTGCCCCACAGCTCTGCCAGACGCTGGCGCGGCCGCCCTCTGAGAGCGG
ATGGCTGCACGAGATCAAGTTCGACGGCTATCGCATCCAGATGCGCGTCCTGGGCGGCGAAGCTATCTTGCAGACCCGCA
AGGGTCTCGACTGGACCGCCAGATATCGCGCCATTGCCCGAGCCGCCGGCAATCTGCCCGATGCGATCATCGACGGCGAG
ATCTGCGCGCTTGACGAAAACGGCGCCCCGGATTTCGCCGCCCTCCAGGCAGCGCTGGCCGAGGGCAAGACCGATGCGCT
TGTCTACTTCGCCTTCGACCTGCTGTTCGAAGGCGCTGAGGATTTGCGTGTCTTGCCATTGAGTAAGCGCAAGGCGCGAT
TGCGTCAGTTTCTGACCGACACGGGTGAGGACGATCGCATCCGCTTCGTTGAGCATTTCGAAACTGGCGGCGAGGCAGTG
CTTCGCTCGGCCTGCCGGCTGTCCTTGGAAGGCATCGTTTCGAAGCGCGCCGATGCGCCCTACGTTTCCGGCCGTACCGA
GACGTGGGCGAAGTCAAAATGTCGCGCAGGCCACGAGGTCGTCATCGGCGCCTATGCCACAACGAATGGCAAATTCCGGT
CGCTTCTGGTCGGCGTCTATCGCGGCGATCACTTCGTCTATGTCGGGCGCGTGGGCACAGGCTATGGCGCAGCCAAGGTC
AGGGACCTGCTGCCGAAGTTGAAAGCTGCCGCGACCCGGAAATCACCTTTCACCGGCATCGGCGCGCCAAAGAACGAACC
CGGCGTTGTCTGGCTGAAGCCGGAACTGGTGGCCGAGATCGAATTCGCCGGCTGGACGTCCGACGGGCTCGTGCGCCAAG
CCGCCTTCAAAGGCTTGCGTGAGGACAAACCGGCCGAGGAGGTCGAAGCCGATAAGCCTGCCTCGCCGGAAAAGACCAAG
GTGCCCCAGCCGCGGGAGCCGACCGCAGCAGCCAAGCCTTCCCGCAGCCGCGGCAAGGTCGATGTCATGGGTGTGCTGAT
CTCGAATCCGGACAAGCCGCTGTGGCCGGATGCCAATGATGGCATCCCCGTAACCAAGGAAGATCTCGCCCGCTATTACG
AAGCTGTCGGTCCCTGGCTGATCGAGCACATCCGCGGGCGGCCCTGCTCAATCATCCGCGCGCCGGATGGATTCGGCGGC
GAGCAGTTCTTCCAGCGTCATGCGATGCCGGGAACGTCAAATCTTCTTGAACTGGTGGAGGTGTTCGGCGACAAGAAGCC
CTACCTACAGATCGACCGTGTGGAGGGTCTCGCCGCCGTCGCCCAGATCGGTGCGCTGGAATTGCATCCCTGGAATTGCG
AGCCACAGCAGCCCGAGGTGCCGGGCCGGCTCGTCTTCGATCTTGATCCAGGTCCCGACGTCCCGTTCAAAACGGTTGTC
GAGGCGGCTAAGGAAATGCGCGCGCGCCTCGACGATCTTGGGCTCGTCAGCTTCTGCAAGACGACTGGCGGCAAAGGGCT
GCACGTCGTCACGCCCTTAGCGGTCACCAAGCGCAGCAAGCTCACCTGGCCAGAGGCAAAAGGGTTTGCTCATGATGTCT
GCCTGCAGATGGCGCGGGACAATCCCGCCCTCTACCTGACCAAGATGGCGAAGAACCAGCGCATCGGCCGCATCTTCCTC
GACTATCTGCGCAACGATCGCATGGCGACCGCCGTGGCTCCGCTGTCGCCGCGGGCCAGGCCCGGCGCGACAGTCTCCAT
GCCGCTCACCTGGGCACAGGTCAAAACCGATCTCGATCCGAAGCGCTTCACCCTGCGCACCGTGCCCGGGCTGCTGGCAA
AGAGCACGGCCTGGAAGGACTATGGCGATGGCCATCGCCTCCTGGAAGCATCCATCAAGCGACTGGCAAGATCGATGCGG
CGGGCGGCCTGA

Upstream 100 bases:

>100_bases
ATGACGCCAGCGCGGGCGTGCCAGCCCCTCGGGGGAACATGTCGCCACTCCGAACATTCCTGCCTGTAGGCCGATGTGGT
CCGTGGTCCGAGGGCATCGA

Downstream 100 bases:

>100_bases
CGCGCGACGGGGCGTTTCCAACCATACGAAGTCACCGAGAATGTGAGATTGCAGGACATCACCCCCTAGCTCCCGGACAT
GGTCTACGAGATGACAGGCC

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 883; Mature: 882

Protein sequence:

>883_residues
MASDKLTTYKAKRDFKKTQEPSGQGSVKPSNRRRFVIQKHDATRLHYDLRLELGGVFKSWAVTRGPSLDPHDKRLAVEVE
DHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKNSPEQALAKGDFKFTLEGERLHGSFVLVRMANDRERGKRTNWLL
IKHRDEYAVETNGAAILDKNDTSVASGRKMEAIAAGKGRSPKPFMLQGGKAEADAVWDSRTGLAAQERKTNIRAKRKKHG
TVTAADLPDFIAPQLCQTLARPPSESGWLHEIKFDGYRIQMRVLGGEAILQTRKGLDWTARYRAIARAAGNLPDAIIDGE
ICALDENGAPDFAALQAALAEGKTDALVYFAFDLLFEGAEDLRVLPLSKRKARLRQFLTDTGEDDRIRFVEHFETGGEAV
LRSACRLSLEGIVSKRADAPYVSGRTETWAKSKCRAGHEVVIGAYATTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAAKV
RDLLPKLKAAATRKSPFTGIGAPKNEPGVVWLKPELVAEIEFAGWTSDGLVRQAAFKGLREDKPAEEVEADKPASPEKTK
VPQPREPTAAAKPSRSRGKVDVMGVLISNPDKPLWPDANDGIPVTKEDLARYYEAVGPWLIEHIRGRPCSIIRAPDGFGG
EQFFQRHAMPGTSNLLELVEVFGDKKPYLQIDRVEGLAAVAQIGALELHPWNCEPQQPEVPGRLVFDLDPGPDVPFKTVV
EAAKEMRARLDDLGLVSFCKTTGGKGLHVVTPLAVTKRSKLTWPEAKGFAHDVCLQMARDNPALYLTKMAKNQRIGRIFL
DYLRNDRMATAVAPLSPRARPGATVSMPLTWAQVKTDLDPKRFTLRTVPGLLAKSTAWKDYGDGHRLLEASIKRLARSMR
RAA

Sequences:

>Translated_883_residues
MASDKLTTYKAKRDFKKTQEPSGQGSVKPSNRRRFVIQKHDATRLHYDLRLELGGVFKSWAVTRGPSLDPHDKRLAVEVE
DHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKNSPEQALAKGDFKFTLEGERLHGSFVLVRMANDRERGKRTNWLL
IKHRDEYAVETNGAAILDKNDTSVASGRKMEAIAAGKGRSPKPFMLQGGKAEADAVWDSRTGLAAQERKTNIRAKRKKHG
TVTAADLPDFIAPQLCQTLARPPSESGWLHEIKFDGYRIQMRVLGGEAILQTRKGLDWTARYRAIARAAGNLPDAIIDGE
ICALDENGAPDFAALQAALAEGKTDALVYFAFDLLFEGAEDLRVLPLSKRKARLRQFLTDTGEDDRIRFVEHFETGGEAV
LRSACRLSLEGIVSKRADAPYVSGRTETWAKSKCRAGHEVVIGAYATTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAAKV
RDLLPKLKAAATRKSPFTGIGAPKNEPGVVWLKPELVAEIEFAGWTSDGLVRQAAFKGLREDKPAEEVEADKPASPEKTK
VPQPREPTAAAKPSRSRGKVDVMGVLISNPDKPLWPDANDGIPVTKEDLARYYEAVGPWLIEHIRGRPCSIIRAPDGFGG
EQFFQRHAMPGTSNLLELVEVFGDKKPYLQIDRVEGLAAVAQIGALELHPWNCEPQQPEVPGRLVFDLDPGPDVPFKTVV
EAAKEMRARLDDLGLVSFCKTTGGKGLHVVTPLAVTKRSKLTWPEAKGFAHDVCLQMARDNPALYLTKMAKNQRIGRIFL
DYLRNDRMATAVAPLSPRARPGATVSMPLTWAQVKTDLDPKRFTLRTVPGLLAKSTAWKDYGDGHRLLEASIKRLARSMR
RAA
>Mature_882_residues
ASDKLTTYKAKRDFKKTQEPSGQGSVKPSNRRRFVIQKHDATRLHYDLRLELGGVFKSWAVTRGPSLDPHDKRLAVEVED
HPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKNSPEQALAKGDFKFTLEGERLHGSFVLVRMANDRERGKRTNWLLI
KHRDEYAVETNGAAILDKNDTSVASGRKMEAIAAGKGRSPKPFMLQGGKAEADAVWDSRTGLAAQERKTNIRAKRKKHGT
VTAADLPDFIAPQLCQTLARPPSESGWLHEIKFDGYRIQMRVLGGEAILQTRKGLDWTARYRAIARAAGNLPDAIIDGEI
CALDENGAPDFAALQAALAEGKTDALVYFAFDLLFEGAEDLRVLPLSKRKARLRQFLTDTGEDDRIRFVEHFETGGEAVL
RSACRLSLEGIVSKRADAPYVSGRTETWAKSKCRAGHEVVIGAYATTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAAKVR
DLLPKLKAAATRKSPFTGIGAPKNEPGVVWLKPELVAEIEFAGWTSDGLVRQAAFKGLREDKPAEEVEADKPASPEKTKV
PQPREPTAAAKPSRSRGKVDVMGVLISNPDKPLWPDANDGIPVTKEDLARYYEAVGPWLIEHIRGRPCSIIRAPDGFGGE
QFFQRHAMPGTSNLLELVEVFGDKKPYLQIDRVEGLAAVAQIGALELHPWNCEPQQPEVPGRLVFDLDPGPDVPFKTVVE
AAKEMRARLDDLGLVSFCKTTGGKGLHVVTPLAVTKRSKLTWPEAKGFAHDVCLQMARDNPALYLTKMAKNQRIGRIFLD
YLRNDRMATAVAPLSPRARPGATVSMPLTWAQVKTDLDPKRFTLRTVPGLLAKSTAWKDYGDGHRLLEASIKRLARSMRR
AA

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 97530; Mature: 97399

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDKLTTYKAKRDFKKTQEPSGQGSVKPSNRRRFVIQKHDATRLHYDLRLELGGVFKSW
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEECCHHHHH
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKNSPE
EECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHH
QALAKGDFKFTLEGERLHGSFVLVRMANDRERGKRTNWLLIKHRDEYAVETNGAAILDKN
HHHHCCCEEEEEECCEECCCEEEEEECCCCCCCCCCCEEEEEECCCEEEECCCEEEEECC
DTSVASGRKMEAIAAGKGRSPKPFMLQGGKAEADAVWDSRTGLAAQERKTNIRAKRKKHG
CCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCC
TVTAADLPDFIAPQLCQTLARPPSESGWLHEIKFDGYRIQMRVLGGEAILQTRKGLDWTA
CEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEECCHHHHHHHCCCCHHH
RYRAIARAAGNLPDAIIDGEICALDENGAPDFAALQAALAEGKTDALVYFAFDLLFEGAE
HHHHHHHHHCCCCCCEECCEEEEECCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHCCCC
DLRVLPLSKRKARLRQFLTDTGEDDRIRFVEHFETGGEAVLRSACRLSLEGIVSKRADAP
CCEEECCHHHHHHHHHHHHCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
YVSGRTETWAKSKCRAGHEVVIGAYATTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAAKV
CCCCCCCHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEEECCEEEEEECCCCCCCHHHH
RDLLPKLKAAATRKSPFTGIGAPKNEPGVVWLKPELVAEIEFAGWTSDGLVRQAAFKGLR
HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHEEEEEECCCCCCHHHHHHHHHCCC
EDKPAEEVEADKPASPEKTKVPQPREPTAAAKPSRSRGKVDVMGVLISNPDKPLWPDAND
CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
GIPVTKEDLARYYEAVGPWLIEHIRGRPCSIIRAPDGFGGEQFFQRHAMPGTSNLLELVE
CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHH
VFGDKKPYLQIDRVEGLAAVAQIGALELHPWNCEPQQPEVPGRLVFDLDPGPDVPFKTVV
HHCCCCCCEEEEHHHHHHHHHHHCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHH
EAAKEMRARLDDLGLVSFCKTTGGKGLHVVTPLAVTKRSKLTWPEAKGFAHDVCLQMARD
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHCC
NPALYLTKMAKNQRIGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWAQVKTDLDP
CCEEEEEEHHCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEECCEEHHHHHCCCCC
KRFTLRTVPGLLAKSTAWKDYGDGHRLLEASIKRLARSMRRAA
CEEEEHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASDKLTTYKAKRDFKKTQEPSGQGSVKPSNRRRFVIQKHDATRLHYDLRLELGGVFKSW
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEECCHHHHH
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKNSPE
EECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHH
QALAKGDFKFTLEGERLHGSFVLVRMANDRERGKRTNWLLIKHRDEYAVETNGAAILDKN
HHHHCCCEEEEEECCEECCCEEEEEECCCCCCCCCCCEEEEEECCCEEEECCCEEEEECC
DTSVASGRKMEAIAAGKGRSPKPFMLQGGKAEADAVWDSRTGLAAQERKTNIRAKRKKHG
CCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCC
TVTAADLPDFIAPQLCQTLARPPSESGWLHEIKFDGYRIQMRVLGGEAILQTRKGLDWTA
CEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEECCHHHHHHHCCCCHHH
RYRAIARAAGNLPDAIIDGEICALDENGAPDFAALQAALAEGKTDALVYFAFDLLFEGAE
HHHHHHHHHCCCCCCEECCEEEEECCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHCCCC
DLRVLPLSKRKARLRQFLTDTGEDDRIRFVEHFETGGEAVLRSACRLSLEGIVSKRADAP
CCEEECCHHHHHHHHHHHHCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
YVSGRTETWAKSKCRAGHEVVIGAYATTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAAKV
CCCCCCCHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEEECCEEEEEECCCCCCCHHHH
RDLLPKLKAAATRKSPFTGIGAPKNEPGVVWLKPELVAEIEFAGWTSDGLVRQAAFKGLR
HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHEEEEEECCCCCCHHHHHHHHHCCC
EDKPAEEVEADKPASPEKTKVPQPREPTAAAKPSRSRGKVDVMGVLISNPDKPLWPDAND
CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
GIPVTKEDLARYYEAVGPWLIEHIRGRPCSIIRAPDGFGGEQFFQRHAMPGTSNLLELVE
CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHH
VFGDKKPYLQIDRVEGLAAVAQIGALELHPWNCEPQQPEVPGRLVFDLDPGPDVPFKTVV
HHCCCCCCEEEEHHHHHHHHHHHCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHH
EAAKEMRARLDDLGLVSFCKTTGGKGLHVVTPLAVTKRSKLTWPEAKGFAHDVCLQMARD
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHCC
NPALYLTKMAKNQRIGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWAQVKTDLDP
CCEEEEEEHHCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEECCEEHHHHHCCCCC
KRFTLRTVPGLLAKSTAWKDYGDGHRLLEASIKRLARSMRRAA
CEEEEHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]