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The map label for this gene is ycdJ [C]

Identifier: 13488467

GI number: 13488467

Start: 87693

End: 88547

Strand: Direct

Name: ycdJ [C]

Synonym: mlr9622

Alternate gene names: 13488467

Gene position: 87693-88547 (Clockwise)

Preceding gene: 13488466

Following gene: 13488468

Centisome position: 42.1

GC content: 57.89

Gene sequence:

>855_bases
ATGTTTGATAATTTCCGGCTCGAGATGATGGAAACCGAAGCCGGGCCGATAAGGCTTCGGCATGGCGGATCCGGGCCACC
CCTTCTTCTGATCCATGGCCATCCGCGCTCACATATGACGTGGGGGCAAGTTGCGGACCTACTCTCGGCAGATTTCAGGA
TCGTGTGCCCCGACCTTCCGGGCTTTGGGCGCTCATACATTCCGAAGGACGACACAGAGAGCAGGTTCTCGTCCAAACGG
GCAAAGGCCTCGGCATTGGTGGAGGTAATGGAGCGCCTGGGCCATCACGCCTTCTTCGTCGCTGGACATGATCGTGGGAG
TTTGGTCGCATTCAGAATGGCGATGGACCATCCCAAGCTGGTGCGTAAGCTCATTATCATGGACGGACTGCCCGTCGTCG
AGCATCTCGAACGCGCTGACTGGAAGTTTGCCCGCGATTGGTACCATTGGTTCTTTTTCGCGCAGCCCGAGAAACCCGAA
CGCGCCATTCTGGCAGACCCTATCGCGTGGTACGGCGCCTTGCGGCCGGATCAGATGGGGCGCGATGCCTATGACGAGCT
GGTCACGCTCATCCATGATCCCACCGTCATCCATGGCATGGTCGAAGACTATCGCGCAGGAATCAGGATCGACCATCGTC
ATGACTGCGAAGATCGAGATGCCGGCCGAAGGGTGCGCTGTCCGATGCTGTGTCTTTGGTCGCTCAATGATGATTTAGAG
CAGATCTATGGCGATCCGATCGCAATCTGGAAGCACTGGGCCGACAATGTGGGAGGCTACGGGATTGAGAGCGGGCACCA
CGTCGCCGAAGAAAATCCAGCTGCTCTCGCAGTCGCGTTCAAGGCCTTTCTCTGA

Upstream 100 bases:

>100_bases
CAGGAGGGCAACGCGCCTGTAGTCGCGACCGACCCATGCCGAACCAATATAGGTTTCGAGAGTTCCTCAACCTGATATGC
GTCTATTTTGAGGATGGCGG

Downstream 100 bases:

>100_bases
AGACCGCAGCGAAACTCATCGACGCCCCCACGCGGGAGCGGGAATTCAGCATCCCGGTCGCCAACACTCGCCAGATCGGC
TGAGCGATCGCTCGGCACAG

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MFDNFRLEMMETEAGPIRLRHGGSGPPLLLIHGHPRSHMTWGQVADLLSADFRIVCPDLPGFGRSYIPKDDTESRFSSKR
AKASALVEVMERLGHHAFFVAGHDRGSLVAFRMAMDHPKLVRKLIIMDGLPVVEHLERADWKFARDWYHWFFFAQPEKPE
RAILADPIAWYGALRPDQMGRDAYDELVTLIHDPTVIHGMVEDYRAGIRIDHRHDCEDRDAGRRVRCPMLCLWSLNDDLE
QIYGDPIAIWKHWADNVGGYGIESGHHVAEENPAALAVAFKAFL

Sequences:

>Translated_284_residues
MFDNFRLEMMETEAGPIRLRHGGSGPPLLLIHGHPRSHMTWGQVADLLSADFRIVCPDLPGFGRSYIPKDDTESRFSSKR
AKASALVEVMERLGHHAFFVAGHDRGSLVAFRMAMDHPKLVRKLIIMDGLPVVEHLERADWKFARDWYHWFFFAQPEKPE
RAILADPIAWYGALRPDQMGRDAYDELVTLIHDPTVIHGMVEDYRAGIRIDHRHDCEDRDAGRRVRCPMLCLWSLNDDLE
QIYGDPIAIWKHWADNVGGYGIESGHHVAEENPAALAVAFKAFL
>Mature_284_residues
MFDNFRLEMMETEAGPIRLRHGGSGPPLLLIHGHPRSHMTWGQVADLLSADFRIVCPDLPGFGRSYIPKDDTESRFSSKR
AKASALVEVMERLGHHAFFVAGHDRGSLVAFRMAMDHPKLVRKLIIMDGLPVVEHLERADWKFARDWYHWFFFAQPEKPE
RAILADPIAWYGALRPDQMGRDAYDELVTLIHDPTVIHGMVEDYRAGIRIDHRHDCEDRDAGRRVRCPMLCLWSLNDDLE
QIYGDPIAIWKHWADNVGGYGIESGHHVAEENPAALAVAFKAFL

Specific function: Catalyzes the hydrolytic defluorination of fluoroacetate to produce glycolate. Has low activity towards chloroacetate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6324392, Length=266, Percent_Identity=24.4360902255639, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: =3.8.1.3 [H]

Molecular weight: Translated: 32426; Mature: 32426

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDNFRLEMMETEAGPIRLRHGGSGPPLLLIHGHPRSHMTWGQVADLLSADFRIVCPDLP
CCCCEEEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHCCCCEEECCCCC
GFGRSYIPKDDTESRFSSKRAKASALVEVMERLGHHAFFVAGHDRGSLVAFRMAMDHPKL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCHHH
VRKLIIMDGLPVVEHLERADWKFARDWYHWFFFAQPEKPERAILADPIAWYGALRPDQMG
HHHHHHHCCCHHHHHHHHHCHHHHHCEEEEEEEECCCCCCCCEEECCHHHHCCCCCHHCC
RDAYDELVTLIHDPTVIHGMVEDYRAGIRIDHRHDCEDRDAGRRVRCPMLCLWSLNDDLE
HHHHHHHHHHHCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCEECCCEEEEECCCHHHH
QIYGDPIAIWKHWADNVGGYGIESGHHVAEENPAALAVAFKAFL
HHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MFDNFRLEMMETEAGPIRLRHGGSGPPLLLIHGHPRSHMTWGQVADLLSADFRIVCPDLP
CCCCEEEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHCCCCEEECCCCC
GFGRSYIPKDDTESRFSSKRAKASALVEVMERLGHHAFFVAGHDRGSLVAFRMAMDHPKL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCHHH
VRKLIIMDGLPVVEHLERADWKFARDWYHWFFFAQPEKPERAILADPIAWYGALRPDQMG
HHHHHHHCCCHHHHHHHHHCHHHHHCEEEEEEEECCCCCCCCEEECCHHHHCCCCCHHCC
RDAYDELVTLIHDPTVIHGMVEDYRAGIRIDHRHDCEDRDAGRRVRCPMLCLWSLNDDLE
HHHHHHHHHHHCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCEECCCEEEEECCCHHHH
QIYGDPIAIWKHWADNVGGYGIESGHHVAEENPAALAVAFKAFL
HHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA