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The map label for this gene is yhdY [C]

Identifier: 13488461

GI number: 13488461

Start: 82283

End: 82981

Strand: Direct

Name: yhdY [C]

Synonym: mlr9614

Alternate gene names: 13488461

Gene position: 82283-82981 (Clockwise)

Preceding gene: 13488448

Following gene: 13488462

Centisome position: 39.5

GC content: 61.8

Gene sequence:

>699_bases
ATGGTCGCCACGCCTTTCAGTAAAAAGTGGTGGCACCTGGTGAGCATGCTGGAGATCTGGCTAGGCATTCTGCAGGGGCT
GGGCATCACCCTGGAGGTCACGGCCTACGGCCTCGTCTTTGCGATCCCCTTCGCGCTCGTCTTCGGCGTCGCGCAGTTTT
TGACGACCGGCATGACCCGTTTCCTGGTCACGGCCGTGATTGAATTCTGGCGCAGCTCCGCGGTCGTCGTCCTGCTCTTC
GTGTTCTACTACGTGCTGCCGGTGATGGGGGTCACCCTATCGGCGCTGACCGTCAGTGCATTGGTACTCGGCCTCAACAC
CGGCGGCTACGCCAGCCAGGCGGTTCGCGCCGGGCTGCAATCTCTTCCCGCCGGCCAACGCGAGGCTGGCATGGCGCTTG
GCCTCTCTCGCCCGGCGATCCTGTTGCTGATCGAACTGCCGCAGGCGCTGGTCACCATGAGCCCTACCTTCATCAACAAC
CTTATCCAGCTCGTCAAAGCGACTTCCCTCGTCTCTCTGGTCACGCTGACGGACATGACCTTCCGCGCCAAGGAGATCGC
GCAGACCCAATACGATCCGGTTGCGATCTATTCGGCGCTTCTGCTGGCCTTCTTCGTCGTCTGCTATCCGATCGCACTCG
CCGGTCGCTGGCTCGAGGCGCGGGTCAATCCTGAAAGAGGAACGCCTCGTGGGATTTAA

Upstream 100 bases:

>100_bases
GTCCTTTCAAGGCGCGGAGGATAGCCATGACGTTTGGTCCGGAGAGCGCGATTTCTGAGCGCAAAGCCGCCTTCCATAGG
TACGGCGAGACGATGCTGAC

Downstream 100 bases:

>100_bases
CCTCGATTTCGCCCTCTCGACCATCCCGACCATTGTCGGGGCAATCGGAGCGACTCTGCTGGCAACGGTGTTGAGTTGCC
TCGGCGCTTCGGCGCTTGGC

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MVATPFSKKWWHLVSMLEIWLGILQGLGITLEVTAYGLVFAIPFALVFGVAQFLTTGMTRFLVTAVIEFWRSSAVVVLLF
VFYYVLPVMGVTLSALTVSALVLGLNTGGYASQAVRAGLQSLPAGQREAGMALGLSRPAILLLIELPQALVTMSPTFINN
LIQLVKATSLVSLVTLTDMTFRAKEIAQTQYDPVAIYSALLLAFFVVCYPIALAGRWLEARVNPERGTPRGI

Sequences:

>Translated_232_residues
MVATPFSKKWWHLVSMLEIWLGILQGLGITLEVTAYGLVFAIPFALVFGVAQFLTTGMTRFLVTAVIEFWRSSAVVVLLF
VFYYVLPVMGVTLSALTVSALVLGLNTGGYASQAVRAGLQSLPAGQREAGMALGLSRPAILLLIELPQALVTMSPTFINN
LIQLVKATSLVSLVTLTDMTFRAKEIAQTQYDPVAIYSALLLAFFVVCYPIALAGRWLEARVNPERGTPRGI
>Mature_232_residues
MVATPFSKKWWHLVSMLEIWLGILQGLGITLEVTAYGLVFAIPFALVFGVAQFLTTGMTRFLVTAVIEFWRSSAVVVLLF
VFYYVLPVMGVTLSALTVSALVLGLNTGGYASQAVRAGLQSLPAGQREAGMALGLSRPAILLLIELPQALVTMSPTFINN
LIQLVKATSLVSLVTLTDMTFRAKEIAQTQYDPVAIYSALLLAFFVVCYPIALAGRWLEARVNPERGTPRGI

Specific function: Probably part of the binding-protein-dependent transport system y4tEFGH for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=214, Percent_Identity=30.3738317757009, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1788226, Length=208, Percent_Identity=25.9615384615385, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1787030, Length=203, Percent_Identity=27.0935960591133, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1786874, Length=213, Percent_Identity=26.2910798122066, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786873, Length=207, Percent_Identity=28.9855072463768, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787087, Length=112, Percent_Identity=33.9285714285714, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788645, Length=215, Percent_Identity=25.5813953488372, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787086, Length=216, Percent_Identity=26.3888888888889, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515
- InterPro:   IPR014342 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25184; Mature: 25184

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVATPFSKKWWHLVSMLEIWLGILQGLGITLEVTAYGLVFAIPFALVFGVAQFLTTGMTR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLVTAVIEFWRSSAVVVLLFVFYYVLPVMGVTLSALTVSALVLGLNTGGYASQAVRAGLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SLPAGQREAGMALGLSRPAILLLIELPQALVTMSPTFINNLIQLVKATSLVSLVTLTDMT
HCCCCCHHCCHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FRAKEIAQTQYDPVAIYSALLLAFFVVCYPIALAGRWLEARVNPERGTPRGI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MVATPFSKKWWHLVSMLEIWLGILQGLGITLEVTAYGLVFAIPFALVFGVAQFLTTGMTR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLVTAVIEFWRSSAVVVLLFVFYYVLPVMGVTLSALTVSALVLGLNTGGYASQAVRAGLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SLPAGQREAGMALGLSRPAILLLIELPQALVTMSPTFINNLIQLVKATSLVSLVTLTDMT
HCCCCCHHCCHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FRAKEIAQTQYDPVAIYSALLLAFFVVCYPIALAGRWLEARVNPERGTPRGI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]