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The map label for this gene is trbB [H]

Identifier: 13488460

GI number: 13488460

Start: 80913

End: 81896

Strand: Reverse

Name: trbB [H]

Synonym: mll9612

Alternate gene names: 13488460

Gene position: 81896-80913 (Counterclockwise)

Preceding gene: 13488464

Following gene: 13488459

Centisome position: 39.31

GC content: 67.28

Gene sequence:

>984_bases
ATGGCTATCTCGCACAACGATACCGAAGGACGCGCGCGCAGCTCGCGCATGCTGCGCACCGCGCTCGGGCCGGCCATCGC
CCGGTTTCTCGACGATCCCGCGATCGTCGAGGTCATGCTCAACCCGGATGGCCGCATCTGGGTGGATTTTCTTTCGAACG
GTCTGGCCGATACGGGGGAAATGCTGGCGCCGGCCGCTGGCGAGCGTATCGTGCGCCTGGTCGCCCATCATGTCGGCGCC
GAGGTCCATTCCCGTTCTCCACGCGTGTCGGCCGAGTTGCCGCAGACCGGCGAGCGTTTCGAGGGCCTGTTGCCGCCCGT
GGTGGCCGCGCCGGCCTTCGCAATCCGCAAGCCCGCCGTCGCCGTGTTCACGCTCGATGACTATGTCGCGGCGGGCACAA
TGTCGGCCGGCCAGGCCGCGATATTGCGTGCCGCGGTTGCCGTGCGCGCGAACATCCTCGTTGCCGGCGGCACGTCGACG
GGCAAGACGACGCTCACCAACGCGCTGCTTGCCGAAGTGGCGAAAGGGACGGACCGCGTCGTCCTCATCGAGGACACCCG
TGAACTGCAATGCGCCGCGCCCAACCTTGTCGCAATGCGCACCAAGGACGGCGTCGCCACGCTTTCCGACCTGGTTCGCT
CGTCTTTGCGCCTGCGGCCCGACCGAATCCCAATCGGCGAGGTGCGCGGCGCCGAAGCACTGGATCTGTTGAAGGCATGG
GGCACCGGGCACCCTGGTGGCATAGGCACCCTTCATGCGGGCTCCGGTATAGGCGCGCTGCGCCGCCTTGAGCAGCTTAT
CCAGGAAGCCGTCGTCACCGTCCCGCGTGCGCTGATCGCCGACACGATCGGCCTTGTCGCTGTGCTCGCCGGACGCGGCG
CCGCGCGACGGCTTGTCGAACTGGTCAGGGTCGAGGGTCTCGGCGCCGACGGCGACTACCGCATTGCTGAAGCCACCCCG
ATCAAAACAGGAGAAACTTCATGA

Upstream 100 bases:

>100_bases
GATGTTGGCTGAAAGCCATTGAACAGGGCCGCTCCCAGGCTCTTTTGATCGTCCCCGACCGGGCGTCGTTCGACGCGTTC
CCGGCCAGAACGGGGACAGG

Downstream 100 bases:

>100_bases
TCCGCCTGCTTTCGCGCTGCCGCGCCAGCCTGGCCGCGGCCAGCGTCGCAATTGCCGTCAACCTCATGGTCGCTCCGGTC
GCCCATGCATCGGGCTCCTC

Product: conjugal transfer protein; TrbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MAISHNDTEGRARSSRMLRTALGPAIARFLDDPAIVEVMLNPDGRIWVDFLSNGLADTGEMLAPAAGERIVRLVAHHVGA
EVHSRSPRVSAELPQTGERFEGLLPPVVAAPAFAIRKPAVAVFTLDDYVAAGTMSAGQAAILRAAVAVRANILVAGGTST
GKTTLTNALLAEVAKGTDRVVLIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGIGTLHAGSGIGALRRLEQLIQEAVVTVPRALIADTIGLVAVLAGRGAARRLVELVRVEGLGADGDYRIAEATP
IKTGETS

Sequences:

>Translated_327_residues
MAISHNDTEGRARSSRMLRTALGPAIARFLDDPAIVEVMLNPDGRIWVDFLSNGLADTGEMLAPAAGERIVRLVAHHVGA
EVHSRSPRVSAELPQTGERFEGLLPPVVAAPAFAIRKPAVAVFTLDDYVAAGTMSAGQAAILRAAVAVRANILVAGGTST
GKTTLTNALLAEVAKGTDRVVLIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGIGTLHAGSGIGALRRLEQLIQEAVVTVPRALIADTIGLVAVLAGRGAARRLVELVRVEGLGADGDYRIAEATP
IKTGETS
>Mature_326_residues
AISHNDTEGRARSSRMLRTALGPAIARFLDDPAIVEVMLNPDGRIWVDFLSNGLADTGEMLAPAAGERIVRLVAHHVGAE
VHSRSPRVSAELPQTGERFEGLLPPVVAAPAFAIRKPAVAVFTLDDYVAAGTMSAGQAAILRAAVAVRANILVAGGTSTG
KTTLTNALLAEVAKGTDRVVLIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWG
TGHPGGIGTLHAGSGIGALRRLEQLIQEAVVTVPRALIADTIGLVAVLAGRGAARRLVELVRVEGLGADGDYRIAEATPI
KTGETS

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 34158; Mature: 34027

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISHNDTEGRARSSRMLRTALGPAIARFLDDPAIVEVMLNPDGRIWVDFLSNGLADTGE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEHHHHHCCCCCCHH
MLAPAAGERIVRLVAHHVGAEVHSRSPRVSAELPQTGERFEGLLPPVVAAPAFAIRKPAV
HHCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHCCCCHHHHCCHHHHCCCCE
AVFTLDDYVAAGTMSAGQAAILRAAVAVRANILVAGGTSTGKTTLTNALLAEVAKGTDRV
EEEEECHHHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCE
VLIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTLHAGSGIGALRRLEQLIQEAVVTVPRALIADTIGLVAVLAGRGAARRLVE
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LVRVEGLGADGDYRIAEATPIKTGETS
HHHHHCCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
AISHNDTEGRARSSRMLRTALGPAIARFLDDPAIVEVMLNPDGRIWVDFLSNGLADTGE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEHHHHHCCCCCCHH
MLAPAAGERIVRLVAHHVGAEVHSRSPRVSAELPQTGERFEGLLPPVVAAPAFAIRKPAV
HHCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHCCCCHHHHCCHHHHCCCCE
AVFTLDDYVAAGTMSAGQAAILRAAVAVRANILVAGGTSTGKTTLTNALLAEVAKGTDRV
EEEEECHHHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCE
VLIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTLHAGSGIGALRRLEQLIQEAVVTVPRALIADTIGLVAVLAGRGAARRLVE
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LVRVEGLGADGDYRIAEATPIKTGETS
HHHHHCCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]