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The map label for this gene is 13488458

Identifier: 13488458

GI number: 13488458

Start: 80303

End: 80953

Strand: Reverse

Name: 13488458

Synonym: mll9611

Alternate gene names: NA

Gene position: 80953-80303 (Counterclockwise)

Preceding gene: 13488459

Following gene: 13488457

Centisome position: 38.86

GC content: 64.06

Gene sequence:

>651_bases
TTGCTGAAGCCACCCCGATCAAAACAGGAGAAACTTCATGATCCGCCTGCTTTCGCGCTGCCGCGCCAGCCTGGCCGCGG
CCAGCGTCGCAATTGCCGTCAACCTCATGGTCGCTCCGGTCGCCCATGCATCGGGCTCCTCGATGCCGTGGGAACAGCCG
CTCGAAAAGATCCTGCAGTCGGTCGAGGGCCCGGTCTCCAAGATCATGGCCGTCATCATCATCATCGTCACCGGCCTGAC
GCTGGCCTTCGGCGACAGTTCGGGCGGCTTCAGACGGCTCATCCAGATCGTTTTTGGTCTCTCGATCGCCTTTGCGGCGT
CGAGTTTCTTTCTGTCGTTCTTCTCGTTCGGCGGCGGGGCATTGATCTGATGGCGGCCGCTCTCGAACAACTCGACGCTG
TGCCGGGATGGACGGTGCCTGTCCACCGGGCGCTGACCGAGCAGATCATGCTTGGCGGCGCGCCGCGCGGAATTGCGATC
CTGAATGGCACGCTGGCGGGCGCCGTCGGTCTCGGGCTGCGGCTCTGGCTTATCGGTCTCCTCATCTGGGCGGTCGGACA
TGCCACTGCGGTATGGGCCGCCAGGCGCGACCCGCTGTTTTTCGAGGTTGGACGCAGGCACCTGCGTCTGCCCGGGCATC
TGTCGGTTTGA

Upstream 100 bases:

>100_bases
ACGATCGGCCTTGTCGCTGTGCTCGCCGGACGCGGCGCCGCGCGACGGCTTGTCGAACTGGTCAGGGTCGAGGGTCTCGG
CGCCGACGGCGACTACCGCA

Downstream 100 bases:

>100_bases
GGGCGCGGTTATGATGAGCCTTGCCGAATACCGCCGGACCGCCGCCCGCCTTGCCGACTACCTGCCTTGGGTCGCTCTCG
TCGCACCGGGCGTGGTGCTC

Product: conjugal transfer protein; TrbB

Products: NA

Alternate protein names: Conjugal Transfer Protein TrbD; Conjugal Transfer Protein; Conjugal Transfer TrbD Transmembrane Protein; Type IV Secretory Pathway TrbD Component; Type IV Secretory Pathway VirB3 Family Protein; Conjugative Transfer Protein TrbD; Type Iv Secretory Pathway Virb3 Family Protein; Conjugal Transfer Trbd Transmembrane Protein; P-Type Conjugative Transfer Protein TrbD; Type IV Secretory Pathway TrbD Component-Like Protein

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MLKPPRSKQEKLHDPPAFALPRQPGRGQRRNCRQPHGRSGRPCIGLLDAVGTAARKDPAVGRGPGLQDHGRHHHHRHRPD
AGLRRQFGRLQTAHPDRFWSLDRLCGVEFLSVVLLVRRRGIDLMAAALEQLDAVPGWTVPVHRALTEQIMLGGAPRGIAI
LNGTLAGAVGLGLRLWLIGLLIWAVGHATAVWAARRDPLFFEVGRRHLRLPGHLSV

Sequences:

>Translated_216_residues
MLKPPRSKQEKLHDPPAFALPRQPGRGQRRNCRQPHGRSGRPCIGLLDAVGTAARKDPAVGRGPGLQDHGRHHHHRHRPD
AGLRRQFGRLQTAHPDRFWSLDRLCGVEFLSVVLLVRRRGIDLMAAALEQLDAVPGWTVPVHRALTEQIMLGGAPRGIAI
LNGTLAGAVGLGLRLWLIGLLIWAVGHATAVWAARRDPLFFEVGRRHLRLPGHLSV
>Mature_216_residues
MLKPPRSKQEKLHDPPAFALPRQPGRGQRRNCRQPHGRSGRPCIGLLDAVGTAARKDPAVGRGPGLQDHGRHHHHRHRPD
AGLRRQFGRLQTAHPDRFWSLDRLCGVEFLSVVLLVRRRGIDLMAAALEQLDAVPGWTVPVHRALTEQIMLGGAPRGIAI
LNGTLAGAVGLGLRLWLIGLLIWAVGHATAVWAARRDPLFFEVGRRHLRLPGHLSV

Specific function: Unknown

COG id: COG5268

COG function: function code NU; Type IV secretory pathway, TrbD component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23853; Mature: 23853

Theoretical pI: Translated: 12.23; Mature: 12.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKPPRSKQEKLHDPPAFALPRQPGRGQRRNCRQPHGRSGRPCIGLLDAVGTAARKDPAV
CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
GRGPGLQDHGRHHHHRHRPDAGLRRQFGRLQTAHPDRFWSLDRLCGVEFLSVVLLVRRRG
CCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
IDLMAAALEQLDAVPGWTVPVHRALTEQIMLGGAPRGIAILNGTLAGAVGLGLRLWLIGL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHH
LIWAVGHATAVWAARRDPLFFEVGRRHLRLPGHLSV
HHHHHHHHHHHHHHCCCCHHHHHCHHHCCCCCCCCC
>Mature Secondary Structure
MLKPPRSKQEKLHDPPAFALPRQPGRGQRRNCRQPHGRSGRPCIGLLDAVGTAARKDPAV
CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
GRGPGLQDHGRHHHHRHRPDAGLRRQFGRLQTAHPDRFWSLDRLCGVEFLSVVLLVRRRG
CCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
IDLMAAALEQLDAVPGWTVPVHRALTEQIMLGGAPRGIAILNGTLAGAVGLGLRLWLIGL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHH
LIWAVGHATAVWAARRDPLFFEVGRRHLRLPGHLSV
HHHHHHHHHHHHHHCCCCHHHHHCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA