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The map label for this gene is trbF [H]

Identifier: 13488454

GI number: 13488454

Start: 74692

End: 75381

Strand: Reverse

Name: trbF [H]

Synonym: mll9605

Alternate gene names: 13488454

Gene position: 75381-74692 (Counterclockwise)

Preceding gene: 13488455

Following gene: 13488453

Centisome position: 36.19

GC content: 64.64

Gene sequence:

>690_bases
ATGAACATCTTCAGGCGCCCCGCCGTCCACTATGGCAAGACCCTTCGGCCGGAAACCCCTTATCAAAAGGCCGAGCAGAT
CTGGGACGAACGCATCGGCTCCGCCCGCGTCCAGGCACGTAACTGGCGCGCCATGGCGTTGGGCTCGCTCATCCTGTCGG
CAGGCCTCGCCACCTCACTGGTCTGGCAGTTGGGCCGAGGTACCGTCGTGCCTTGGGTCGTGCAGGTCGATACGCTGGGC
CAGGCGCAAGCGATCGCGCCCGCGATCGCCGACTACAAGCCGACCGACCCACAGATAGCATGGCATCTCGCCCGCTTCGT
CGAGCAGGTGCGCTCCGTCCCCGCGGACCCCATCATCCTGCGCCAGGATTGGCTGCGCGCCTATGATTGGACGACCGACC
AGGGCGCTGCGGCCCTCAACGATTACGCTCGCGTCAACGACCCTTTCTCCAGGGTCGGCAAGCAGCAGGTCGCGGTGGAG
ATTTCTTCGGTCATCCGGGCCTCGCCGAGCTCCTTTCGTGTCGCCTGGATCGAGCGGCACTATGAAAACGGCCAGCTTTC
CAGCGCCGAGCGCTGGACCGCGATCCTGACAATCGTGACGCAGATGCCGAACGACGCCGAACGCCTTCGCGCCAATCCCC
TCGGGATCTACGTCAATGCCATCAACTGGTCGCGGGAGATGGGCCAATGA

Upstream 100 bases:

>100_bases
GCGCGTCTCTCACGGCGCGCAGACCGCCGCCCACGCGGTGCGCGCCGGCGACAGCCATGGCGGCGGCGCTTCGATTTCTC
TTTCTGAAGGCGAATGACCC

Downstream 100 bases:

>100_bases
GCCGCCCGACATTACGTCTTGCTGCCGGTACGATTGTCTGGAGATACCTGCTATCGGTCGTGCTGGTCCCGGGGGTGGCG
CTGCTGGCCGGTTGCGCCAC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MNIFRRPAVHYGKTLRPETPYQKAEQIWDERIGSARVQARNWRAMALGSLILSAGLATSLVWQLGRGTVVPWVVQVDTLG
QAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPADPIILRQDWLRAYDWTTDQGAAALNDYARVNDPFSRVGKQQVAVE
ISSVIRASPSSFRVAWIERHYENGQLSSAERWTAILTIVTQMPNDAERLRANPLGIYVNAINWSREMGQ

Sequences:

>Translated_229_residues
MNIFRRPAVHYGKTLRPETPYQKAEQIWDERIGSARVQARNWRAMALGSLILSAGLATSLVWQLGRGTVVPWVVQVDTLG
QAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPADPIILRQDWLRAYDWTTDQGAAALNDYARVNDPFSRVGKQQVAVE
ISSVIRASPSSFRVAWIERHYENGQLSSAERWTAILTIVTQMPNDAERLRANPLGIYVNAINWSREMGQ
>Mature_229_residues
MNIFRRPAVHYGKTLRPETPYQKAEQIWDERIGSARVQARNWRAMALGSLILSAGLATSLVWQLGRGTVVPWVVQVDTLG
QAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPADPIILRQDWLRAYDWTTDQGAAALNDYARVNDPFSRVGKQQVAVE
ISSVIRASPSSFRVAWIERHYENGQLSSAERWTAILTIVTQMPNDAERLRANPLGIYVNAINWSREMGQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25819; Mature: 25819

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFRRPAVHYGKTLRPETPYQKAEQIWDERIGSARVQARNWRAMALGSLILSAGLATSL
CCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHH
VWQLGRGTVVPWVVQVDTLGQAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPADPIIL
HHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
RQDWLRAYDWTTDQGAAALNDYARVNDPFSRVGKQQVAVEISSVIRASPSSFRVAWIERH
HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHCCCCCCEEHHHHHH
YENGQLSSAERWTAILTIVTQMPNDAERLRANPLGIYVNAINWSREMGQ
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECCHHHHCC
>Mature Secondary Structure
MNIFRRPAVHYGKTLRPETPYQKAEQIWDERIGSARVQARNWRAMALGSLILSAGLATSL
CCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHH
VWQLGRGTVVPWVVQVDTLGQAQAIAPAIADYKPTDPQIAWHLARFVEQVRSVPADPIIL
HHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
RQDWLRAYDWTTDQGAAALNDYARVNDPFSRVGKQQVAVEISSVIRASPSSFRVAWIERH
HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHCCCCCCEEHHHHHH
YENGQLSSAERWTAILTIVTQMPNDAERLRANPLGIYVNAINWSREMGQ
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]