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The map label for this gene is rhiR [H]

Identifier: 13488404

GI number: 13488404

Start: 31169

End: 31897

Strand: Direct

Name: rhiR [H]

Synonym: mlr9544

Alternate gene names: 13488404

Gene position: 31169-31897 (Clockwise)

Preceding gene: 13488401

Following gene: 13488405

Centisome position: 14.96

GC content: 58.44

Gene sequence:

>729_bases
ATGGAGAACGAAACTGTTGTCGACCTTTTTGCGGCGATCACGAAGATCGACACTGCGCGGTCGGCTGATGCAATCCTTCA
GGAGTTCCGCTTCACCATGGAGCGCTACGGATTGCACAATTTTCTGATCACCGGATTGCCTGTGCCGCACGGTACGGACT
GGCAGCGTGAAATTCTCGCTGATGGCTGGTCTCCTGAATGGCATCATCGCTACGTCACCGAGGCGTATTTTTTGCACGAT
CCTTGTGTCGCCCAGTGTCGGCACTCGCCAGAGCCTTTCCGATGGGGCGAGCTGCCGGTCGCAAGGCTGGTTCCACGCGC
GAAGCTGGTCATGGACGAGGCGGCCGAGTTCGGGATGAAAGAAGGCATCTGCATCCCAATTCATGTCCCATTGGCCGGGC
CAGGCGTCGTCACGATGGCGAGTGACCGGATGGAAGTTCCGCCAAGCGCCATGCCCCTTATCGAGACGCTTTGCGTGCAT
ACCTTTCGCAGCCTCTCTGCGCTGGGAACGCCCGGCGATGGCAATGAGCCCACGCCCTTGACGGCGCGCGAGCGCGAACT
CCTGGAGTGGAGCGCGCAAGGCAAATCCACCGATGACATTGCTTGTATCCTCGGTGTTACCAGGAACACGGTTGAAAGCC
ATCAGCGCAACATTCGAGGAAAGCTCGATGCGATCAATGTCGCGCATGCCATCGTAAAGGCGCTGCGACGGCAGGAAATC
CAGATTTAG

Upstream 100 bases:

>100_bases
TCCTTCAGTGTACATTCGATGCGCGTCCTATTGAAGATTGTGTCTAGACAGCCATAGGTTGTTCCGCGGGGTAGGGCCTG
ACTGTGGTTGAGGTCTGCCA

Downstream 100 bases:

>100_bases
CAATACCTGAATACCGTCATACGTACGCCAAGTGCGTTTTCCTACGACCCTCCGCCTGGAGGCGTCATGGTTCGTATACA
TTTGGTCAATTGGGACAACA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MENETVVDLFAAITKIDTARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREILADGWSPEWHHRYVTEAYFLHD
PCVAQCRHSPEPFRWGELPVARLVPRAKLVMDEAAEFGMKEGICIPIHVPLAGPGVVTMASDRMEVPPSAMPLIETLCVH
TFRSLSALGTPGDGNEPTPLTARERELLEWSAQGKSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRRQEI
QI

Sequences:

>Translated_242_residues
MENETVVDLFAAITKIDTARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREILADGWSPEWHHRYVTEAYFLHD
PCVAQCRHSPEPFRWGELPVARLVPRAKLVMDEAAEFGMKEGICIPIHVPLAGPGVVTMASDRMEVPPSAMPLIETLCVH
TFRSLSALGTPGDGNEPTPLTARERELLEWSAQGKSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRRQEI
QI
>Mature_242_residues
MENETVVDLFAAITKIDTARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREILADGWSPEWHHRYVTEAYFLHD
PCVAQCRHSPEPFRWGELPVARLVPRAKLVMDEAAEFGMKEGICIPIHVPLAGPGVVTMASDRMEVPPSAMPLIETLCVH
TFRSLSALGTPGDGNEPTPLTARERELLEWSAQGKSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRRQEI
QI

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27049; Mature: 27049

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENETVVDLFAAITKIDTARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREILA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHEECCCCCCCCCHHHHHHH
DGWSPEWHHRYVTEAYFLHDPCVAQCRHSPEPFRWGELPVARLVPRAKLVMDEAAEFGMK
CCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCC
EGICIPIHVPLAGPGVVTMASDRMEVPPSAMPLIETLCVHTFRSLSALGTPGDGNEPTPL
CCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TARERELLEWSAQGKSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRRQEI
CHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
QI
CC
>Mature Secondary Structure
MENETVVDLFAAITKIDTARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREILA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHEECCCCCCCCCHHHHHHH
DGWSPEWHHRYVTEAYFLHDPCVAQCRHSPEPFRWGELPVARLVPRAKLVMDEAAEFGMK
CCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCC
EGICIPIHVPLAGPGVVTMASDRMEVPPSAMPLIETLCVHTFRSLSALGTPGDGNEPTPL
CCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TARERELLEWSAQGKSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRRQEI
CHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
QI
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]