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The map label for this gene is bkdR [H]

Identifier: 13488398

GI number: 13488398

Start: 24168

End: 24635

Strand: Reverse

Name: bkdR [H]

Synonym: mll9538

Alternate gene names: 13488398

Gene position: 24635-24168 (Counterclockwise)

Preceding gene: 13488402

Following gene: 13488392

Centisome position: 11.83

GC content: 61.97

Gene sequence:

>468_bases
GTGCCAAATCCGACGCTTGATGCCATCGACCTCAAAATCATTGCCGCGCTGCAGAAGAACGCAAAAGCGACGACAAACGA
TCTCGCTGAAGCCGTCGGTCTTTCGCCTTCGCCTTGCGCCCGGCGCGTGAGGCTCCTGGAGCGCGCCGGCGTCATCAAGG
GCTACACCGTGGTCCTCGACCAGAAGAAGCTCGGCCTGCCGATCAGCGCTTTCGCATCGATCAAGCTTGAGCGGCAACGC
GAGGACGATCTCGACCGCTTCTCGCAAGCCGTGCTGCGCTGGCCGGAGGTCGTCGACTGCTATCTGATGACCGGCCAGCG
CGACTACCTGATGCGCATCGTGGTGCGTGACCTCGAAGCCTATGAGCGGTTCATCAAGGACAAGCTGACGCGGCTGGACA
ACATCGCGTCGATCGAAAGCAGCTTCGCCCTGGGCCAGGTCAAGCGGTCGGAAGCCCTGCCTGCCTAA

Upstream 100 bases:

>100_bases
GAGGATAGCTAGATCGGTCGTCGAAATGTGGCTATTCTTGCTCGATGCATTCAGCAAGATTGGCTGATCTAGCTAACTGT
GATCGTCAAATGAGGGAAAT

Downstream 100 bases:

>100_bases
CCGACCGGTAGGGCTTTAACGGCGGTAACAGGGGTTAGATTCCCCGTGGGCGTACCACCTTCATCTAATTTCCCTTTTCG
TTCAATGCCTTGCGGCGATG

Product: transcriptional regulator-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MPNPTLDAIDLKIIAALQKNAKATTNDLAEAVGLSPSPCARRVRLLERAGVIKGYTVVLDQKKLGLPISAFASIKLERQR
EDDLDRFSQAVLRWPEVVDCYLMTGQRDYLMRIVVRDLEAYERFIKDKLTRLDNIASIESSFALGQVKRSEALPA

Sequences:

>Translated_155_residues
MPNPTLDAIDLKIIAALQKNAKATTNDLAEAVGLSPSPCARRVRLLERAGVIKGYTVVLDQKKLGLPISAFASIKLERQR
EDDLDRFSQAVLRWPEVVDCYLMTGQRDYLMRIVVRDLEAYERFIKDKLTRLDNIASIESSFALGQVKRSEALPA
>Mature_154_residues
PNPTLDAIDLKIIAALQKNAKATTNDLAEAVGLSPSPCARRVRLLERAGVIKGYTVVLDQKKLGLPISAFASIKLERQRE
DDLDRFSQAVLRWPEVVDCYLMTGQRDYLMRIVVRDLEAYERFIKDKLTRLDNIASIESSFALGQVKRSEALPA

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=149, Percent_Identity=37.5838926174497, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1787116, Length=152, Percent_Identity=36.8421052631579, Blast_Score=110, Evalue=4e-26,
Organism=Escherichia coli, GI1790182, Length=147, Percent_Identity=27.2108843537415, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17388; Mature: 17257

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNPTLDAIDLKIIAALQKNAKATTNDLAEAVGLSPSPCARRVRLLERAGVIKGYTVVLD
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEE
QKKLGLPISAFASIKLERQREDDLDRFSQAVLRWPEVVDCYLMTGQRDYLMRIVVRDLEA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHH
YERFIKDKLTRLDNIASIESSFALGQVKRSEALPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PNPTLDAIDLKIIAALQKNAKATTNDLAEAVGLSPSPCARRVRLLERAGVIKGYTVVLD
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEE
QKKLGLPISAFASIKLERQREDDLDRFSQAVLRWPEVVDCYLMTGQRDYLMRIVVRDLEA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHH
YERFIKDKLTRLDNIASIESSFALGQVKRSEALPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]