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The map label for this gene is 13488389

Identifier: 13488389

GI number: 13488389

Start: 18701

End: 19558

Strand: Direct

Name: 13488389

Synonym: mlr9524

Alternate gene names: NA

Gene position: 18701-19558 (Clockwise)

Preceding gene: 13488388

Following gene: 13488390

Centisome position: 8.98

GC content: 60.02

Gene sequence:

>858_bases
ATGCGTTTGAAGTTCGTAGCCCCCCTAATGCCGACCCTTGTTGAGAAGCCTCCCGAGGGCGACGCCTGGATTCACGAGGT
CAAGTTCGACGGCTACCGATCGCAGTTGATCATCGATGAGGACGGGACGCGCATCTACACGCGCAATGGTCACGACTGGA
CAGCCAAATATTCCGACTTGGTGCAGGAGGCGAAGAGCCTCGGCGCCGAAAGTGCCATCATCGACGGCGAGATCATCGTT
CTGAACGAAGCCGGCCTGTCCGACTTCGGCGAACTCCGCAAGGCCATAACCCACCGGCAGCACGACCTCTATTTCGTGGC
ATTCGATCTGTTGCACCTCAACGGATTCGATCTTCGCGATATGGCGCTCAAAGACCGCAGGGCTGGGCTCTACGCGATAA
TTCCGCCTGGCCTTCGTATCCAATTCAGCGACGCGCTGCCCGGCGATGCCAAGGCGATCTTCGAACTGGTCGATAAGGCC
GGGCTTGAAGGCATGGTCTCGAAGCGCAAAGACAGTAAGTATCGAAGCGGCAACTCGACGGCCTGGCTCAAGATCAAGGC
ATACACCGTCGACGAATATGAACTGCTCGGGGTCGAGCGTGAGGCGGGCAAGCCGGCTTTCGCCCTGATGGCCGATCGCA
AGACCGGCCGCTATGTCGGCTCGGCTTTCATCAACTCCAGCCGCGCCATCCGTGAGCGGCTGTGGAAACGTGTCCAAGAG
CACGCAGGGTCGCCTCCGAAGGGGATGAAGCGGCCGGGGACGCAATGGGTCAAGCCGGGCCTGATTGGCCGTGTGAAGCA
CCTACGGGGCGAGGAAGACCTCCGCCACGCCTCGCTGCAGGATTTTCGTGAAGAATGA

Upstream 100 bases:

>100_bases
GCGCTGTTCCAAATTAGGACTGCGCGGTCAATTAACTGTTAAAATCTTCCGGAACTAATTAAGCGCATGCTAATTGAATC
GCGGTTTGCGAGTCCTGTGC

Downstream 100 bases:

>100_bases
GCAAGCGAGGCAACGTTTTTCTCTACCATTGGATATCGGACCATTTATCCGACGATCCGATCACTGACCACGTGCTGTTG
GTCATTGAAATGGCTGTGGA

Product: DNA ligase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MRLKFVAPLMPTLVEKPPEGDAWIHEVKFDGYRSQLIIDEDGTRIYTRNGHDWTAKYSDLVQEAKSLGAESAIIDGEIIV
LNEAGLSDFGELRKAITHRQHDLYFVAFDLLHLNGFDLRDMALKDRRAGLYAIIPPGLRIQFSDALPGDAKAIFELVDKA
GLEGMVSKRKDSKYRSGNSTAWLKIKAYTVDEYELLGVEREAGKPAFALMADRKTGRYVGSAFINSSRAIRERLWKRVQE
HAGSPPKGMKRPGTQWVKPGLIGRVKHLRGEEDLRHASLQDFREE

Sequences:

>Translated_285_residues
MRLKFVAPLMPTLVEKPPEGDAWIHEVKFDGYRSQLIIDEDGTRIYTRNGHDWTAKYSDLVQEAKSLGAESAIIDGEIIV
LNEAGLSDFGELRKAITHRQHDLYFVAFDLLHLNGFDLRDMALKDRRAGLYAIIPPGLRIQFSDALPGDAKAIFELVDKA
GLEGMVSKRKDSKYRSGNSTAWLKIKAYTVDEYELLGVEREAGKPAFALMADRKTGRYVGSAFINSSRAIRERLWKRVQE
HAGSPPKGMKRPGTQWVKPGLIGRVKHLRGEEDLRHASLQDFREE
>Mature_285_residues
MRLKFVAPLMPTLVEKPPEGDAWIHEVKFDGYRSQLIIDEDGTRIYTRNGHDWTAKYSDLVQEAKSLGAESAIIDGEIIV
LNEAGLSDFGELRKAITHRQHDLYFVAFDLLHLNGFDLRDMALKDRRAGLYAIIPPGLRIQFSDALPGDAKAIFELVDKA
GLEGMVSKRKDSKYRSGNSTAWLKIKAYTVDEYELLGVEREAGKPAFALMADRKTGRYVGSAFINSSRAIRERLWKRVQE
HAGSPPKGMKRPGTQWVKPGLIGRVKHLRGEEDLRHASLQDFREE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 32206; Mature: 32206

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKFVAPLMPTLVEKPPEGDAWIHEVKFDGYRSQLIIDEDGTRIYTRNGHDWTAKYSDL
CCEEEHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCHHHHHHH
VQEAKSLGAESAIIDGEIIVLNEAGLSDFGELRKAITHRQHDLYFVAFDLLHLNGFDLRD
HHHHHHCCCCCEEECCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEHHCCCCCHHH
MALKDRRAGLYAIIPPGLRIQFSDALPGDAKAIFELVDKAGLEGMVSKRKDSKYRSGNST
HHHHHHCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCE
AWLKIKAYTVDEYELLGVEREAGKPAFALMADRKTGRYVGSAFINSSRAIRERLWKRVQE
EEEEEEEEEECCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHH
HAGSPPKGMKRPGTQWVKPGLIGRVKHLRGEEDLRHASLQDFREE
HCCCCCCCCCCCCCHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLKFVAPLMPTLVEKPPEGDAWIHEVKFDGYRSQLIIDEDGTRIYTRNGHDWTAKYSDL
CCEEEHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCHHHHHHH
VQEAKSLGAESAIIDGEIIVLNEAGLSDFGELRKAITHRQHDLYFVAFDLLHLNGFDLRD
HHHHHHCCCCCEEECCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEHHCCCCCHHH
MALKDRRAGLYAIIPPGLRIQFSDALPGDAKAIFELVDKAGLEGMVSKRKDSKYRSGNST
HHHHHHCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCE
AWLKIKAYTVDEYELLGVEREAGKPAFALMADRKTGRYVGSAFINSSRAIRERLWKRVQE
EEEEEEEEEECCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHH
HAGSPPKGMKRPGTQWVKPGLIGRVKHLRGEEDLRHASLQDFREE
HCCCCCCCCCCCCCHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]