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The map label for this gene is yoaH [H]

Identifier: 13488383

GI number: 13488383

Start: 11634

End: 13271

Strand: Reverse

Name: yoaH [H]

Synonym: mll9517

Alternate gene names: 13488383

Gene position: 13271-11634 (Counterclockwise)

Preceding gene: 13488392

Following gene: 13488382

Centisome position: 6.37

GC content: 57.63

Gene sequence:

>1638_bases
ATGAAGAGTCTGACAATACGCCACCGCATCCTCGTCAGTTTCGCTGCCGTTCTGGTGGTCATGTCCGTGATCGCCGTCAT
CGCGTACGCCTGGTTTCTTCAGGCGGGGCAGGAGGCGACTGAGGTCGAGAAGGGCATCCTTCCAGACGTCTATCACAGCA
CCGAGATCATGATTGGCCAGATGACGGCCCATAGTCTGCTTCAGGAATATGCCCTTCAGGACAACCCGTCAGATAGAAGC
ACGCTTGAAAGCGCGATCACGACCAATCGCGACCAAGTGCAGCGGTCGATGGACGACTATGAAGCAACAATCGTCTCCGA
CATCGACAAGCAGAATTATGCAGTCGTCAAAGAACTCGCCAACCAATTTCGTCTGGCTGAAACTGCTGTGCTGGACACAA
GCCGGGCTGCCTTGTCGAAAGGTGAAACTCCCAATGAAAGCCCGGCCATCAAGAACACCGTAGAGCCGATCTTTGTAAAA
TTGCAGTCCGCTCTGCAGGCCATGGTCGCGGACCACAGAGGCGAGGCAAACAGCGCGACGCAGCGGATCAGCTCGATCGT
TAGAACGGCGGAAGTCGGTTTGAGCGTTGGCTTGTTGATAGCCCTCGGGCTAGCCCTTCTTTTGGGTTACCAGCTGTTTC
GCGCCATTACAGGTCCGCTCACCCGTTTGGTCGCCGCGGTTCAATTGATGCGGCAAGGCGACTTCAGCGAACGCCTCGAC
CTGAGGCGCAAAGACGAATTCAGCGTGCTTGCCGACGGCTTCAACGCAATGGCGGACGATCTCACAACCCTCATTGGTCA
GGTTCAAAGGTCCAGCATACAGGTCGGCACGTCGATAACTGAGATCGCCGCCACCTCCAAGCAACAGCAGGCAACTGCGA
CTGAAATCGCAGCGACCACAACAGAAATCCGCGCGACAGCCAAGGAAATCTCCGCCACATCAAACGAGCTGGTCCGCACG
ATGAACGAGGTCTCGACAGTTGCCGAGCAAACGGCCGCCGTCGCCGGCGGAGGGCAAGCGGGGCTGACCCGTATGGAAGA
AACCATGCAGCAGGTCATGGAAGCGGCCGGCGCGATCAATTCCAAACTCGCGATCTTGAGTGAGAAAGCCGGCACCATCA
ATCAGGTGGTGACGACCATCACCAAAGTCGCCGATCAGACGAATCTGTTGTCGCTCAACGCTTCCATCGAGGCGGAGAAG
GCAGGCCAATATGGCCGGGGTTTTGCAGTGGTGGCGACGGAAATCCGAAGGCTCGCGGACCAGACGGCTGTCTCCACCTA
CGATATCGAGCAGATGGTCAAGGACATCCAGTCGGCAGTCGCGGCCGGGGTGATGGGCATGGACAAGTTTTCCGAGCAGG
TCCGCCGCGGTATGCAGGAAATCCAGCAGGTCGGCGGGCAACTCTTCGAGATCATTCAGCAGGTTCAGGGGCTGGTGCCA
CGTTTCGAAGTCGCCAATGAAGCCATGCAAGCACAGGCGACCGGCGCGGGGCAGATCAGCGACACGCTAACCCAGCTAAG
CGAGGCAGCTCAGCAAACAGTCGAATCCCTTCAGCAATCAACGCTCGCGATCGACGAGCTCAATCAAGTCTCAGGCGGCA
TGCGAAGTAGCATTTCGAGGTTCAAGCTGCGAGCGTAG

Upstream 100 bases:

>100_bases
TTCAGCATCAGACTACCGATTTTCGACGCACCTTTTTCGAATACGCCGGAACGAGCGCTTGTCGCGCAGCCCACGATGCC
CCCATTGGTGAACCGGTTCC

Downstream 100 bases:

>100_bases
CGAGCCGGCAGTAGGAGGTGACAATGCTATTCCTCGCCTTCAGCATGGGTCCGGATCGCTACTTGATCGATGTCCACCAA
ATTGAAGAGGTGCTGCCCTA

Product: chemotaxis transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MKSLTIRHRILVSFAAVLVVMSVIAVIAYAWFLQAGQEATEVEKGILPDVYHSTEIMIGQMTAHSLLQEYALQDNPSDRS
TLESAITTNRDQVQRSMDDYEATIVSDIDKQNYAVVKELANQFRLAETAVLDTSRAALSKGETPNESPAIKNTVEPIFVK
LQSALQAMVADHRGEANSATQRISSIVRTAEVGLSVGLLIALGLALLLGYQLFRAITGPLTRLVAAVQLMRQGDFSERLD
LRRKDEFSVLADGFNAMADDLTTLIGQVQRSSIQVGTSITEIAATSKQQQATATEIAATTTEIRATAKEISATSNELVRT
MNEVSTVAEQTAAVAGGGQAGLTRMEETMQQVMEAAGAINSKLAILSEKAGTINQVVTTITKVADQTNLLSLNASIEAEK
AGQYGRGFAVVATEIRRLADQTAVSTYDIEQMVKDIQSAVAAGVMGMDKFSEQVRRGMQEIQQVGGQLFEIIQQVQGLVP
RFEVANEAMQAQATGAGQISDTLTQLSEAAQQTVESLQQSTLAIDELNQVSGGMRSSISRFKLRA

Sequences:

>Translated_545_residues
MKSLTIRHRILVSFAAVLVVMSVIAVIAYAWFLQAGQEATEVEKGILPDVYHSTEIMIGQMTAHSLLQEYALQDNPSDRS
TLESAITTNRDQVQRSMDDYEATIVSDIDKQNYAVVKELANQFRLAETAVLDTSRAALSKGETPNESPAIKNTVEPIFVK
LQSALQAMVADHRGEANSATQRISSIVRTAEVGLSVGLLIALGLALLLGYQLFRAITGPLTRLVAAVQLMRQGDFSERLD
LRRKDEFSVLADGFNAMADDLTTLIGQVQRSSIQVGTSITEIAATSKQQQATATEIAATTTEIRATAKEISATSNELVRT
MNEVSTVAEQTAAVAGGGQAGLTRMEETMQQVMEAAGAINSKLAILSEKAGTINQVVTTITKVADQTNLLSLNASIEAEK
AGQYGRGFAVVATEIRRLADQTAVSTYDIEQMVKDIQSAVAAGVMGMDKFSEQVRRGMQEIQQVGGQLFEIIQQVQGLVP
RFEVANEAMQAQATGAGQISDTLTQLSEAAQQTVESLQQSTLAIDELNQVSGGMRSSISRFKLRA
>Mature_545_residues
MKSLTIRHRILVSFAAVLVVMSVIAVIAYAWFLQAGQEATEVEKGILPDVYHSTEIMIGQMTAHSLLQEYALQDNPSDRS
TLESAITTNRDQVQRSMDDYEATIVSDIDKQNYAVVKELANQFRLAETAVLDTSRAALSKGETPNESPAIKNTVEPIFVK
LQSALQAMVADHRGEANSATQRISSIVRTAEVGLSVGLLIALGLALLLGYQLFRAITGPLTRLVAAVQLMRQGDFSERLD
LRRKDEFSVLADGFNAMADDLTTLIGQVQRSSIQVGTSITEIAATSKQQQATATEIAATTTEIRATAKEISATSNELVRT
MNEVSTVAEQTAAVAGGGQAGLTRMEETMQQVMEAAGAINSKLAILSEKAGTINQVVTTITKVADQTNLLSLNASIEAEK
AGQYGRGFAVVATEIRRLADQTAVSTYDIEQMVKDIQSAVAAGVMGMDKFSEQVRRGMQEIQQVGGQLFEIIQQVQGLVP
RFEVANEAMQAQATGAGQISDTLTQLSEAAQQTVESLQQSTLAIDELNQVSGGMRSSISRFKLRA

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=351, Percent_Identity=24.5014245014245, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1788194, Length=348, Percent_Identity=26.7241379310345, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI2367378, Length=238, Percent_Identity=24.3697478991597, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788195, Length=240, Percent_Identity=27.5, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1789453, Length=351, Percent_Identity=24.2165242165242, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007891
- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF05227 CHASE3; PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 58697; Mature: 58697

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLTIRHRILVSFAAVLVVMSVIAVIAYAWFLQAGQEATEVEKGILPDVYHSTEIMIGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHCCHHHHHHH
MTAHSLLQEYALQDNPSDRSTLESAITTNRDQVQRSMDDYEATIVSDIDKQNYAVVKELA
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
NQFRLAETAVLDTSRAALSKGETPNESPAIKNTVEPIFVKLQSALQAMVADHRGEANSAT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QRISSIVRTAEVGLSVGLLIALGLALLLGYQLFRAITGPLTRLVAAVQLMRQGDFSERLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
LRRKDEFSVLADGFNAMADDLTTLIGQVQRSSIQVGTSITEIAATSKQQQATATEIAATT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
TEIRATAKEISATSNELVRTMNEVSTVAEQTAAVAGGGQAGLTRMEETMQQVMEAAGAIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
SKLAILSEKAGTINQVVTTITKVADQTNLLSLNASIEAEKAGQYGRGFAVVATEIRRLAD
HHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHH
QTAVSTYDIEQMVKDIQSAVAAGVMGMDKFSEQVRRGMQEIQQVGGQLFEIIQQVQGLVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RFEVANEAMQAQATGAGQISDTLTQLSEAAQQTVESLQQSTLAIDELNQVSGGMRSSISR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FKLRA
HHCCC
>Mature Secondary Structure
MKSLTIRHRILVSFAAVLVVMSVIAVIAYAWFLQAGQEATEVEKGILPDVYHSTEIMIGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHCCHHHHHHH
MTAHSLLQEYALQDNPSDRSTLESAITTNRDQVQRSMDDYEATIVSDIDKQNYAVVKELA
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
NQFRLAETAVLDTSRAALSKGETPNESPAIKNTVEPIFVKLQSALQAMVADHRGEANSAT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QRISSIVRTAEVGLSVGLLIALGLALLLGYQLFRAITGPLTRLVAAVQLMRQGDFSERLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
LRRKDEFSVLADGFNAMADDLTTLIGQVQRSSIQVGTSITEIAATSKQQQATATEIAATT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
TEIRATAKEISATSNELVRTMNEVSTVAEQTAAVAGGGQAGLTRMEETMQQVMEAAGAIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
SKLAILSEKAGTINQVVTTITKVADQTNLLSLNASIEAEKAGQYGRGFAVVATEIRRLAD
HHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHH
QTAVSTYDIEQMVKDIQSAVAAGVMGMDKFSEQVRRGMQEIQQVGGQLFEIIQQVQGLVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RFEVANEAMQAQATGAGQISDTLTQLSEAAQQTVESLQQSTLAIDELNQVSGGMRSSISR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FKLRA
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]