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The map label for this gene is cph2 [H]

Identifier: 13488377

GI number: 13488377

Start: 4871

End: 5935

Strand: Reverse

Name: cph2 [H]

Synonym: mll9509

Alternate gene names: 13488377

Gene position: 5935-4871 (Counterclockwise)

Preceding gene: 13488378

Following gene: 13488376

Centisome position: 2.85

GC content: 57.18

Gene sequence:

>1065_bases
GTGCGATCGGCTCACGTATTATCGAAGCCTGCGAGCGCTCCACATGAAAGGGCTCGTCCGATGACGCAAGAACCAGAGCT
GGTCCCGCCACTCGCAGATAACTATTCATCCATGGTTCTGCTCATCGATGATCAGATCATGGTTTGCGAGGCGGTCAGGC
GTGCTCTAGCCAACGAGCCCGATATTTCCTTACACTTCTGCACCGACCCGTTGAGAGCGATGACGGTCGCGGATGAGGTA
AAGCCAACCGTTATCCTGCAGGATCTCGTCATGCCCGGGGTCGATGGGCTGCATCTGGTGCGAGAATACAGGAAGCATGC
GTCGACACGCGCGGTCCCAGTCATTGTGCTGTCGAGCAAGGAAGATCCAGCCACCAAGGGCGTAGCCTTCGCTGCGGGAG
CGAACGACTATCTCGTCAAACTGCCGGATCGTATCGAGCTGATTGCACGTATTCGATATCACACGCGGGCCTATCTGGAT
CACGTCCAGCGAGACGCGGCATACCGAGCGCTAAGGGAAAGCCAGCGACAGCTGATCAGTGCAAATCTCGAGCTTGAACG
TCTGACGCGGATCGATGGCCTGACGGGTCTCGGCAACAGGCGCTATTTTGATGAATATCTGGCGGCTGAATGGAAGCGCG
CTTTTCGCGCACAGTCCCCATTGTCGCTGTTGATGATCGATGCCGACAACTTCAAACGATACAACGATACCTATGGCCAT
ATGGCCGGCGACGAGGTGCTCAAGCAAATCGCCCGCGTAATCCATAGCGGTTCCGGCCGCTCCACCGATCTCGCTGCGCG
GTACGGAGGCGAAGAGTTCGTCATCGTGCTGGTCGACACTTTACTGGAAGAATCCAGTGCGATCGCAGAGCAACTCGTCC
AGGGGGTGCGGGAGTTGAACATACCCCACGGCCCGGATCGCGTGACCATCAGCGTTGGCGTCGCAACAACGGTGCCCAAC
GAAAACGAGACGCCAAACGATTTCGTCAATGCCGCCGATTTGGCTCTGTTTCGTGCCAAATCGGAAGGACGGAATCGTGT
GGCGCTTCATCTGTCTCGCAGCTAG

Upstream 100 bases:

>100_bases
GGGCATCTCACAATCGCGCAGGATAGAGCAACCAGTGCCGTCTATGGCATGCCGAAGGCCGCCGCCGACATCGGCGCGGC
TGTTGATATTCTTCCTTTGA

Downstream 100 bases:

>100_bases
AGAAGCTCAACGCTGGACGGCGAGAGGCGCAACCATTTGGCCAGCCGCACAGGCGGCGAACCGCTGGCGCGAGATTGTTG
GGTTTAGCCATCCGGATTCC

Product: regulatory components of sensory transduction system

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MRSAHVLSKPASAPHERARPMTQEPELVPPLADNYSSMVLLIDDQIMVCEAVRRALANEPDISLHFCTDPLRAMTVADEV
KPTVILQDLVMPGVDGLHLVREYRKHASTRAVPVIVLSSKEDPATKGVAFAAGANDYLVKLPDRIELIARIRYHTRAYLD
HVQRDAAYRALRESQRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRYNDTYGH
MAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQGVRELNIPHGPDRVTISVGVATTVPN
ENETPNDFVNAADLALFRAKSEGRNRVALHLSRS

Sequences:

>Translated_354_residues
MRSAHVLSKPASAPHERARPMTQEPELVPPLADNYSSMVLLIDDQIMVCEAVRRALANEPDISLHFCTDPLRAMTVADEV
KPTVILQDLVMPGVDGLHLVREYRKHASTRAVPVIVLSSKEDPATKGVAFAAGANDYLVKLPDRIELIARIRYHTRAYLD
HVQRDAAYRALRESQRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRYNDTYGH
MAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQGVRELNIPHGPDRVTISVGVATTVPN
ENETPNDFVNAADLALFRAKSEGRNRVALHLSRS
>Mature_354_residues
MRSAHVLSKPASAPHERARPMTQEPELVPPLADNYSSMVLLIDDQIMVCEAVRRALANEPDISLHFCTDPLRAMTVADEV
KPTVILQDLVMPGVDGLHLVREYRKHASTRAVPVIVLSSKEDPATKGVAFAAGANDYLVKLPDRIELIARIRYHTRAYLD
HVQRDAAYRALRESQRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRYNDTYGH
MAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQGVRELNIPHGPDRVTISVGVATTVPN
ENETPNDFVNAADLALFRAKSEGRNRVALHLSRS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=164, Percent_Identity=41.4634146341463, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI145693134, Length=186, Percent_Identity=36.5591397849462, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=39.5061728395062, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=35.5828220858896, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787816, Length=203, Percent_Identity=33.9901477832512, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=37.1069182389937, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=161, Percent_Identity=34.1614906832298, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788956, Length=176, Percent_Identity=30.6818181818182, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=34.5454545454545, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787056, Length=158, Percent_Identity=31.0126582278481, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=32.258064516129, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787802, Length=138, Percent_Identity=35.5072463768116, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87081977, Length=188, Percent_Identity=28.1914893617021, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=28.8343558282209, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 39408; Mature: 39408

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSAHVLSKPASAPHERARPMTQEPELVPPLADNYSSMVLLIDDQIMVCEAVRRALANEP
CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCC
DISLHFCTDPLRAMTVADEVKPTVILQDLVMPGVDGLHLVREYRKHASTRAVPVIVLSSK
CCEEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECC
EDPATKGVAFAAGANDYLVKLPDRIELIARIRYHTRAYLDHVQRDAAYRALRESQRQLIS
CCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRYNDTYGH
CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCCCCCC
MAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQGVRELN
CCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCC
IPHGPDRVTISVGVATTVPNENETPNDFVNAADLALFRAKSEGRNRVALHLSRS
CCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECC
>Mature Secondary Structure
MRSAHVLSKPASAPHERARPMTQEPELVPPLADNYSSMVLLIDDQIMVCEAVRRALANEP
CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCC
DISLHFCTDPLRAMTVADEVKPTVILQDLVMPGVDGLHLVREYRKHASTRAVPVIVLSSK
CCEEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECC
EDPATKGVAFAAGANDYLVKLPDRIELIARIRYHTRAYLDHVQRDAAYRALRESQRQLIS
CCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRYNDTYGH
CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCCCCCC
MAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQGVRELN
CCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCC
IPHGPDRVTISVGVATTVPNENETPNDFVNAADLALFRAKSEGRNRVALHLSRS
CCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]