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The map label for this gene is glpR [H]

Identifier: 13488273

GI number: 13488273

Start: 242844

End: 243620

Strand: Direct

Name: glpR [H]

Synonym: mlr9266

Alternate gene names: 13488273

Gene position: 242844-243620 (Clockwise)

Preceding gene: 13488272

Following gene: 13488274

Centisome position: 69.01

GC content: 58.43

Gene sequence:

>777_bases
ATGTCGCTCAGTCACAATCGTCATAAGAAGCTCATCGAGATGGTCCAAACGGACGGCGAAGTTCGGATCCGCGATCTGAT
GGTGCATTTCAATGTATCCGAAGAGACCGCCCGACGGGACATCAAGCAACTCGAGCAAGATGGGTTGGTCGTGCGCGTAC
ATGGCGGTGCAGTCGCCACACAGCAACCGAAGCTCCTGACGATCTCGTCGCGTGCCATTTCTGAGCTGGCAGAAAAGAAC
GTTATCGCCGAAATAGCGCTCGGCCTCTTGAAGCCGGGGCAGAATCTTTTCTTTGGTGGGGGGAGCACGGTGCTGGCTCT
GGCGCGTCGGATATCCATGCTGCCGGAAATGCGTATCGTCACCAACATGGTTGATACTGCAATCGCCGCCTCCGAAGGCC
GCCGGCATCGCGTCGTCTTGCTCGGCGGCGATTTCAACGGCGACTATCGCGTCGTGACCGGATTTGCGGCGCTGCGCACG
CTTCGCGAACAGCAGATCGATATCGCATTCATCGGGGTCAATGCGGTGCACCCGACGCTCGGCGTTTTTGATCATGAGCA
GGGTGGGCAGGAACTCGCAGCGACGCTTGCAGAACAGGCACGGAAGATCACTGTGCTCGCCGACCATAGCAAGTTCGGGC
GGTCGGCGCGTTACCGAACCCTGCCCCATTCTGCCATCGCTACAATCATCACCGATCAGCAACCGGAACCGCATGTGCTG
ACTGCCATCGAAGGCGCTGGCGCTGACGTCCTATATCCGCCGCAAAATCCGTCATAA

Upstream 100 bases:

>100_bases
AATAGGGAAAACTGCGCTCTATGAAGCGCTGAAGGCCGAAAAGTCAGTCGCATCTACCGTCAAACCGGTATGAGTTCTGC
GCGCGAGAGAAGAGAGAAGA

Downstream 100 bases:

>100_bases
CACCGCATTGAAACCCTTCGTAGCGGCGTACGGAGGGAAGAAATGCCTCAAATTCTTGTTTGGTTGACACAATTTAACCG
CCACTCCTGCCTGTCTCCAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSLSHNRHKKLIEMVQTDGEVRIRDLMVHFNVSEETARRDIKQLEQDGLVVRVHGGAVATQQPKLLTISSRAISELAEKN
VIAEIALGLLKPGQNLFFGGGSTVLALARRISMLPEMRIVTNMVDTAIAASEGRRHRVVLLGGDFNGDYRVVTGFAALRT
LREQQIDIAFIGVNAVHPTLGVFDHEQGGQELAATLAEQARKITVLADHSKFGRSARYRTLPHSAIATIITDQQPEPHVL
TAIEGAGADVLYPPQNPS

Sequences:

>Translated_258_residues
MSLSHNRHKKLIEMVQTDGEVRIRDLMVHFNVSEETARRDIKQLEQDGLVVRVHGGAVATQQPKLLTISSRAISELAEKN
VIAEIALGLLKPGQNLFFGGGSTVLALARRISMLPEMRIVTNMVDTAIAASEGRRHRVVLLGGDFNGDYRVVTGFAALRT
LREQQIDIAFIGVNAVHPTLGVFDHEQGGQELAATLAEQARKITVLADHSKFGRSARYRTLPHSAIATIITDQQPEPHVL
TAIEGAGADVLYPPQNPS
>Mature_257_residues
SLSHNRHKKLIEMVQTDGEVRIRDLMVHFNVSEETARRDIKQLEQDGLVVRVHGGAVATQQPKLLTISSRAISELAEKNV
IAEIALGLLKPGQNLFFGGGSTVLALARRISMLPEMRIVTNMVDTAIAASEGRRHRVVLLGGDFNGDYRVVTGFAALRTL
REQQIDIAFIGVNAVHPTLGVFDHEQGGQELAATLAEQARKITVLADHSKFGRSARYRTLPHSAIATIITDQQPEPHVLT
AIEGAGADVLYPPQNPS

Specific function: Repressor of the glycerol-3-phosphate regulon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=248, Percent_Identity=27.4193548387097, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1789829, Length=239, Percent_Identity=28.8702928870293, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788069, Length=236, Percent_Identity=30.0847457627119, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789059, Length=246, Percent_Identity=26.0162601626016, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI226510968, Length=230, Percent_Identity=29.5652173913043, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082344, Length=250, Percent_Identity=25.2, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787540, Length=232, Percent_Identity=28.0172413793103, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1790635, Length=260, Percent_Identity=26.1538461538462, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789170, Length=233, Percent_Identity=24.4635193133047, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787063, Length=232, Percent_Identity=28.448275862069, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790753, Length=254, Percent_Identity=24.4094488188976, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28145; Mature: 28014

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSHNRHKKLIEMVQTDGEVRIRDLMVHFNVSEETARRDIKQLEQDGLVVRVHGGAVAT
CCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCEEEC
QQPKLLTISSRAISELAEKNVIAEIALGLLKPGQNLFFGGGSTVLALARRISMLPEMRIV
CCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCHHHHH
TNMVDTAIAASEGRRHRVVLLGGDFNGDYRVVTGFAALRTLREQQIDIAFIGVNAVHPTL
HHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCC
GVFDHEQGGQELAATLAEQARKITVLADHSKFGRSARYRTLPHSAIATIITDQQPEPHVL
CCCCCCCCHHHHHHHHHHHHHEEEEEECCHHHCCCCCCCCCCHHHHHHEEECCCCCCCEE
TAIEGAGADVLYPPQNPS
EEECCCCCCEECCCCCCC
>Mature Secondary Structure 
SLSHNRHKKLIEMVQTDGEVRIRDLMVHFNVSEETARRDIKQLEQDGLVVRVHGGAVAT
CCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCEEEC
QQPKLLTISSRAISELAEKNVIAEIALGLLKPGQNLFFGGGSTVLALARRISMLPEMRIV
CCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCHHHHH
TNMVDTAIAASEGRRHRVVLLGGDFNGDYRVVTGFAALRTLREQQIDIAFIGVNAVHPTL
HHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCC
GVFDHEQGGQELAATLAEQARKITVLADHSKFGRSARYRTLPHSAIATIITDQQPEPHVL
CCCCCCCCHHHHHHHHHHHHHEEEEEECCHHHCCCCCCCCCCHHHHHHEEECCCCCCCEE
TAIEGAGADVLYPPQNPS
EEECCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8752340; 10984043 [H]