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The map label for this gene is pinE [H]

Identifier: 13488272

GI number: 13488272

Start: 242196

End: 242816

Strand: Direct

Name: pinE [H]

Synonym: mlr9265

Alternate gene names: 13488272

Gene position: 242196-242816 (Clockwise)

Preceding gene: 13488359

Following gene: 13488273

Centisome position: 68.82

GC content: 57.49

Gene sequence:

>621_bases
GTGTCCGAATTCAACGAGAAAACGGACACGTCATGCCTCATGACCGCCATCGGCTATGCAAGGGTCTCCACCGGCGACCA
GGAAACTGCCCTGCAGCTCGACGCATTGCGCAAAGCAGGCTGTGATAGGGTATTTGAAGACAGAGCATCGGGCGTGAAGA
CTGATCGGCCTGGTCTCGGCGAAGCCATTCGATATGTCCGGGAGGGCGACACACTCACTGTCTGGAAGCTGGACCGCCTC
GGCCGCTCGATGAAGCACCTAATCGAGATCATCGCTGAATTGGAGGCTAAAGGCGTCGGTTTCCGATCCATTACTGAAAA
TATCGATACGACGACATCTGGCGGGAGCTTGGTGTTCCATTTTTTCGGCGCTTTGGCCCAATTCGAGCGCGATCTGATCA
GGGAAAGAACCCGCGCCGGCCTGCAAGCCGCAAGGGAAAGAGGCCGACGCGGTGGGCGGCAGGCTGTCGTGACGCCTGAA
AAACTTGAAAGGGCTCGCCAGTTGCTCGCAGCCGGTCTCAACGTGCGCGAAGCTGCCGCGCGCGTCAAAATAGGGAAAAC
TGCGCTCTATGAAGCGCTGAAGGCCGAAAAGTCAGTCGCATCTACCGTCAAACCGGTATGA

Upstream 100 bases:

>100_bases
CGACTGCAGCAGAGGTCAAAAGAGGATTTCAGTAGGGACGTTTTGGAACGAGTACGCAGAATTTGTCCGAAAACCTTGCC
ATTCGTCGGCAAATCGGACA

Downstream 100 bases:

>100_bases
GTTCTGCGCGCGAGAGAAGAGAGAAGAATGTCGCTCAGTCACAATCGTCATAAGAAGCTCATCGAGATGGTCCAAACGGA
CGGCGAAGTTCGGATCCGCG

Product: invertase/recombinase like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSEFNEKTDTSCLMTAIGYARVSTGDQETALQLDALRKAGCDRVFEDRASGVKTDRPGLGEAIRYVREGDTLTVWKLDRL
GRSMKHLIEIIAELEAKGVGFRSITENIDTTTSGGSLVFHFFGALAQFERDLIRERTRAGLQAARERGRRGGRQAVVTPE
KLERARQLLAAGLNVREAAARVKIGKTALYEALKAEKSVASTVKPV

Sequences:

>Translated_206_residues
MSEFNEKTDTSCLMTAIGYARVSTGDQETALQLDALRKAGCDRVFEDRASGVKTDRPGLGEAIRYVREGDTLTVWKLDRL
GRSMKHLIEIIAELEAKGVGFRSITENIDTTTSGGSLVFHFFGALAQFERDLIRERTRAGLQAARERGRRGGRQAVVTPE
KLERARQLLAAGLNVREAAARVKIGKTALYEALKAEKSVASTVKPV
>Mature_205_residues
SEFNEKTDTSCLMTAIGYARVSTGDQETALQLDALRKAGCDRVFEDRASGVKTDRPGLGEAIRYVREGDTLTVWKLDRLG
RSMKHLIEIIAELEAKGVGFRSITENIDTTTSGGSLVFHFFGALAQFERDLIRERTRAGLQAARERGRRGGRQAVVTPEK
LERARQLLAAGLNVREAAARVKIGKTALYEALKAEKSVASTVKPV

Specific function: This protein catalyzes the inversion of an 1800-bp E.coli DNA fragment, the P region, which can exist in either orientation. The function of the inversion is not yet clear [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=179, Percent_Identity=51.9553072625698, Blast_Score=191, Evalue=3e-50,
Organism=Escherichia coli, GI1787827, Length=182, Percent_Identity=30.2197802197802, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787638, Length=182, Percent_Identity=30.2197802197802, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 22625; Mature: 22494

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFNEKTDTSCLMTAIGYARVSTGDQETALQLDALRKAGCDRVFEDRASGVKTDRPGLG
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHH
EAIRYVREGDTLTVWKLDRLGRSMKHLIEIIAELEAKGVGFRSITENIDTTTSGGSLVFH
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHH
FFGALAQFERDLIRERTRAGLQAARERGRRGGRQAVVTPEKLERARQLLAAGLNVREAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
RVKIGKTALYEALKAEKSVASTVKPV
HHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SEFNEKTDTSCLMTAIGYARVSTGDQETALQLDALRKAGCDRVFEDRASGVKTDRPGLG
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHH
EAIRYVREGDTLTVWKLDRLGRSMKHLIEIIAELEAKGVGFRSITENIDTTTSGGSLVFH
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHH
FFGALAQFERDLIRERTRAGLQAARERGRRGGRQAVVTPEKLERARQLLAAGLNVREAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
RVKIGKTALYEALKAEKSVASTVKPV
HHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3894006; 6310572; 8905232; 9278503 [H]