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The map label for this gene is virD4 [H]

Identifier: 13488270

GI number: 13488270

Start: 238965

End: 241292

Strand: Direct

Name: virD4 [H]

Synonym: mlr9261

Alternate gene names: 13488270

Gene position: 238965-241292 (Clockwise)

Preceding gene: 13488269

Following gene: 13488271

Centisome position: 67.9

GC content: 61.55

Gene sequence:

>2328_bases
ATGTCGCGCGTATTGGCTTATAGGCTTTTCCTCGGCCTCATGGGCCTCGCCGCCTTCTTCGCCCTTTGGAGCCTGGCCTA
CGAGCTGGTGGCGACATGGCGGTGGAACCCCGCCCTCCCTTCCGAAGGCGCCTCGCGCTGGGGGCTTCTAAAATACCAGA
ATGCGCAACGCAGCCTAAGCGGCCTGTTGGTTGCCTGGCAGCATTTCAGCCAGCGCCTGGCCTATCGTCCCACGCAGGGC
GAGACGATCATCCGCGGCGCGATCGCGGCCGCGGTTGTCGTGGCGATCGGCGTCGGCCTGATCTTTGCAAGCCTGATCAA
TCGCAAGCCAAAGCACTACGGCGATGCGCGGTTCGGCACGATCATGGACGCCGAAAGGAAAAACCTGCTGGCAAAGCAAG
GCTTGATCCTCGGCAAGATGGGTGGGGCGACGATCCGCTCGGACGATCCCGCGCACGTCCTGGTGGTCGGGCCGACCCGA
TCCGGCAAGGGCGTCAGCTTTGTCATTCCGAACGGTTATATGTGGCGAGGATCCTCGGTGTGGTTCGATCCGAAGCGGGA
GAATTTCGAGGCGTTCGGTGCACACCGGCAGGCTCTCGGCGACAAGGTCTTTTTCTTTTCCCCCGGCGAGCGGGACTCGC
ATCGCTATAATCCGCTGGATTTCATCCGGCCCGATGCGCGCATGCCGACGGACTGCGCGGTGGTCTCCTCCTTCATCATC
CCGGAGGCCACAGGGAGTTCCGAGATCTGGGCGCGCGCCGGCCGGCAGCTGCTTACGGCCATGATCGGCTATGTCCTGAC
ATCGCCACGCTATGAGGGGCAGCGTCATTTGCGAGCTGTCGCGATGCTTCTGTCGACCGGCGTGGATTTTCTCAGGGTAC
TGACGAATATCCGTAATGACGAGGAAAAATATCTGCCTTCGTGGGTCGTGCAGGGGCTCAACCAGTTCATCGCGCTGGAA
AAGGAAACGCGAAACTCGGCCTACTTCAACCTGACGGCGGCTCTCAACCCCTGGACCAATGATCTCGTTGCAGCCGCTAC
GGCGTCGACCGATTTCGATATCTCGAAGCTTCGCAAGGACCCGACGGCTCTCTTCATCGGCTGCTCGGTGGCGCAGCTCG
ACGTGTTCCGGCCCATCATCAAAATCCTGGTTCAGCAAATCCATGATGTGTTGATGGCCTCCTTGCCGGGCCCGGACGAG
CCCTACCAGGTCCTGGTGATGATCGACGAGTTTCGCCAACTCGGCAAAATGGAGTCTATAGTGTCCAAGCTGGCGATCAA
CGCGGGATACGGCTTCCGCATGGTCCTGGTCCTGCAGGACCTCGCCCAGCTCGACGAAGTCTATGGAAAAGCGACGCGGC
AGACCACGGTGTCCGCGTGCCAGGTGAAGCTTTTTATCCGCATGAACGACGTGGAGACCTCGGAATATGTCTCTGTAATG
CTGGGACCGACCACGATCGAGGTGCCCACACCGATTATCAGAGCCGGTCAAGGTATATTCGGCGCCCGAGACAAGAGTTT
AAGTTATCAGGAAAGGCCGCTCCGGACGGCGGCGGAGCTTCGACAGATGCCAGCGAAGCAGGCCGTGGTTCTGGTGCCGA
GCGCACCTGGTTTCATGGTGCGCAAGGTCACCTATTATAAGGACGCTCCCTATAAGGCGACCTATCAGGAATTTCGCCAC
CGGCGCTTGAAGGTTCCGCCTCTCTCCCGATGGCAGGATCTTCCGCTGCGCTCCCTGGCCGACGTCGAAGCGGCGGCTCA
CACCGCACCAGCGGCGCCTTTCGAGTTGCGGGAACCCGATACCGTCGAAGCGCCGGTTTCGGGCGATAAAGCCTTTGCCG
ATGCTGCGCCGCCGGCGACCGGTGCGGCCGCTGACGGGGTTGATCCTGTTGGGCCAAAGCCGAAAGTGGATAGCGACAGC
GCGGGCGCATCTCGGGCGCTGCCAAGCCCAGGCCTTCGAGCGAGTGGCGAGGCTGAAGCAAAGAGTGAGGACGCCGCTGA
AGTTTCGGAGTTGAAACCGAAGCGGACCGATCAGACGGCCGACAATGCGCCGCGACCGCTTCCCACCCTTGGCCGGCGAT
CGGCGCCGGCAGCATCAAACGCGTCCGACCCGAGCGCGTCTGAAGGCAAGGCAAGCGTCTTGCAATTCCAAGTCCGGCCG
GGAAACAAGTCCACGTCGGTCGCCGCGCTGCTCGCATCGCTCGATCAGGAGGTGGAGGCCGGCGCTCGTTCACTGTCGCC
GTCAGTGGATAGCGGAGATGTCGACGGGGTACCGTCAGCCGCAATTGAAGAGCTGCAGGATCAAATTAGACGTCACGGCG
ATCGCTAG

Upstream 100 bases:

>100_bases
ATTGTCATCCAACAGACGCGCCGGGGCGGCTGGCGTGGAACTTCGGCGATCTGGTTCAGCCGCATGACCGAATGGAGAGC
CGCCAGAAAGGTTTCCCAGA

Downstream 100 bases:

>100_bases
GACACGCCCGCCGAAACTGCTTAAGGCAAGCCGTGATCTCATGAAGTCATGAGGTCATCACACTATTCCCGGCCGGGCCG
ATGGCGCTGGTTCCTTGATA

Product: type IV secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 775; Mature: 774

Protein sequence:

>775_residues
MSRVLAYRLFLGLMGLAAFFALWSLAYELVATWRWNPALPSEGASRWGLLKYQNAQRSLSGLLVAWQHFSQRLAYRPTQG
ETIIRGAIAAAVVVAIGVGLIFASLINRKPKHYGDARFGTIMDAERKNLLAKQGLILGKMGGATIRSDDPAHVLVVGPTR
SGKGVSFVIPNGYMWRGSSVWFDPKRENFEAFGAHRQALGDKVFFFSPGERDSHRYNPLDFIRPDARMPTDCAVVSSFII
PEATGSSEIWARAGRQLLTAMIGYVLTSPRYEGQRHLRAVAMLLSTGVDFLRVLTNIRNDEEKYLPSWVVQGLNQFIALE
KETRNSAYFNLTAALNPWTNDLVAAATASTDFDISKLRKDPTALFIGCSVAQLDVFRPIIKILVQQIHDVLMASLPGPDE
PYQVLVMIDEFRQLGKMESIVSKLAINAGYGFRMVLVLQDLAQLDEVYGKATRQTTVSACQVKLFIRMNDVETSEYVSVM
LGPTTIEVPTPIIRAGQGIFGARDKSLSYQERPLRTAAELRQMPAKQAVVLVPSAPGFMVRKVTYYKDAPYKATYQEFRH
RRLKVPPLSRWQDLPLRSLADVEAAAHTAPAAPFELREPDTVEAPVSGDKAFADAAPPATGAAADGVDPVGPKPKVDSDS
AGASRALPSPGLRASGEAEAKSEDAAEVSELKPKRTDQTADNAPRPLPTLGRRSAPAASNASDPSASEGKASVLQFQVRP
GNKSTSVAALLASLDQEVEAGARSLSPSVDSGDVDGVPSAAIEELQDQIRRHGDR

Sequences:

>Translated_775_residues
MSRVLAYRLFLGLMGLAAFFALWSLAYELVATWRWNPALPSEGASRWGLLKYQNAQRSLSGLLVAWQHFSQRLAYRPTQG
ETIIRGAIAAAVVVAIGVGLIFASLINRKPKHYGDARFGTIMDAERKNLLAKQGLILGKMGGATIRSDDPAHVLVVGPTR
SGKGVSFVIPNGYMWRGSSVWFDPKRENFEAFGAHRQALGDKVFFFSPGERDSHRYNPLDFIRPDARMPTDCAVVSSFII
PEATGSSEIWARAGRQLLTAMIGYVLTSPRYEGQRHLRAVAMLLSTGVDFLRVLTNIRNDEEKYLPSWVVQGLNQFIALE
KETRNSAYFNLTAALNPWTNDLVAAATASTDFDISKLRKDPTALFIGCSVAQLDVFRPIIKILVQQIHDVLMASLPGPDE
PYQVLVMIDEFRQLGKMESIVSKLAINAGYGFRMVLVLQDLAQLDEVYGKATRQTTVSACQVKLFIRMNDVETSEYVSVM
LGPTTIEVPTPIIRAGQGIFGARDKSLSYQERPLRTAAELRQMPAKQAVVLVPSAPGFMVRKVTYYKDAPYKATYQEFRH
RRLKVPPLSRWQDLPLRSLADVEAAAHTAPAAPFELREPDTVEAPVSGDKAFADAAPPATGAAADGVDPVGPKPKVDSDS
AGASRALPSPGLRASGEAEAKSEDAAEVSELKPKRTDQTADNAPRPLPTLGRRSAPAASNASDPSASEGKASVLQFQVRP
GNKSTSVAALLASLDQEVEAGARSLSPSVDSGDVDGVPSAAIEELQDQIRRHGDR
>Mature_774_residues
SRVLAYRLFLGLMGLAAFFALWSLAYELVATWRWNPALPSEGASRWGLLKYQNAQRSLSGLLVAWQHFSQRLAYRPTQGE
TIIRGAIAAAVVVAIGVGLIFASLINRKPKHYGDARFGTIMDAERKNLLAKQGLILGKMGGATIRSDDPAHVLVVGPTRS
GKGVSFVIPNGYMWRGSSVWFDPKRENFEAFGAHRQALGDKVFFFSPGERDSHRYNPLDFIRPDARMPTDCAVVSSFIIP
EATGSSEIWARAGRQLLTAMIGYVLTSPRYEGQRHLRAVAMLLSTGVDFLRVLTNIRNDEEKYLPSWVVQGLNQFIALEK
ETRNSAYFNLTAALNPWTNDLVAAATASTDFDISKLRKDPTALFIGCSVAQLDVFRPIIKILVQQIHDVLMASLPGPDEP
YQVLVMIDEFRQLGKMESIVSKLAINAGYGFRMVLVLQDLAQLDEVYGKATRQTTVSACQVKLFIRMNDVETSEYVSVML
GPTTIEVPTPIIRAGQGIFGARDKSLSYQERPLRTAAELRQMPAKQAVVLVPSAPGFMVRKVTYYKDAPYKATYQEFRHR
RLKVPPLSRWQDLPLRSLADVEAAAHTAPAAPFELREPDTVEAPVSGDKAFADAAPPATGAAADGVDPVGPKPKVDSDSA
GASRALPSPGLRASGEAEAKSEDAAEVSELKPKRTDQTADNAPRPLPTLGRRSAPAASNASDPSASEGKASVLQFQVRPG
NKSTSVAALLASLDQEVEAGARSLSPSVDSGDVDGVPSAAIEELQDQIRRHGDR

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 84427; Mature: 84296

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00318 HMG_COA_REDUCTASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVLAYRLFLGLMGLAAFFALWSLAYELVATWRWNPALPSEGASRWGLLKYQNAQRSLS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHH
GLLVAWQHFSQRLAYRPTQGETIIRGAIAAAVVVAIGVGLIFASLINRKPKHYGDARFGT
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
IMDAERKNLLAKQGLILGKMGGATIRSDDPAHVLVVGPTRSGKGVSFVIPNGYMWRGSSV
HHHHHHHHHHHHCCCEEECCCCCEECCCCCCEEEEEECCCCCCCEEEEECCCEEECCCCE
WFDPKRENFEAFGAHRQALGDKVFFFSPGERDSHRYNPLDFIRPDARMPTDCAVVSSFII
EECCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHC
PEATGSSEIWARAGRQLLTAMIGYVLTSPRYEGQRHLRAVAMLLSTGVDFLRVLTNIRND
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
EEKYLPSWVVQGLNQFIALEKETRNSAYFNLTAALNPWTNDLVAAATASTDFDISKLRKD
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHCCC
PTALFIGCSVAQLDVFRPIIKILVQQIHDVLMASLPGPDEPYQVLVMIDEFRQLGKMESI
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHH
VSKLAINAGYGFRMVLVLQDLAQLDEVYGKATRQTTVSACQVKLFIRMNDVETSEYVSVM
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHEEEE
LGPTTIEVPTPIIRAGQGIFGARDKSLSYQERPLRTAAELRQMPAKQAVVLVPSAPGFMV
ECCEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEE
RKVTYYKDAPYKATYQEFRHRRLKVPPLSRWQDLPLRSLADVEAAAHTAPAAPFELREPD
EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
TVEAPVSGDKAFADAAPPATGAAADGVDPVGPKPKVDSDSAGASRALPSPGLRASGEAEA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KSEDAAEVSELKPKRTDQTADNAPRPLPTLGRRSAPAASNASDPSASEGKASVLQFQVRP
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
GNKSTSVAALLASLDQEVEAGARSLSPSVDSGDVDGVPSAAIEELQDQIRRHGDR
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRVLAYRLFLGLMGLAAFFALWSLAYELVATWRWNPALPSEGASRWGLLKYQNAQRSLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHH
GLLVAWQHFSQRLAYRPTQGETIIRGAIAAAVVVAIGVGLIFASLINRKPKHYGDARFGT
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
IMDAERKNLLAKQGLILGKMGGATIRSDDPAHVLVVGPTRSGKGVSFVIPNGYMWRGSSV
HHHHHHHHHHHHCCCEEECCCCCEECCCCCCEEEEEECCCCCCCEEEEECCCEEECCCCE
WFDPKRENFEAFGAHRQALGDKVFFFSPGERDSHRYNPLDFIRPDARMPTDCAVVSSFII
EECCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHC
PEATGSSEIWARAGRQLLTAMIGYVLTSPRYEGQRHLRAVAMLLSTGVDFLRVLTNIRND
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
EEKYLPSWVVQGLNQFIALEKETRNSAYFNLTAALNPWTNDLVAAATASTDFDISKLRKD
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHCCC
PTALFIGCSVAQLDVFRPIIKILVQQIHDVLMASLPGPDEPYQVLVMIDEFRQLGKMESI
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHH
VSKLAINAGYGFRMVLVLQDLAQLDEVYGKATRQTTVSACQVKLFIRMNDVETSEYVSVM
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHEEEE
LGPTTIEVPTPIIRAGQGIFGARDKSLSYQERPLRTAAELRQMPAKQAVVLVPSAPGFMV
ECCEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEE
RKVTYYKDAPYKATYQEFRHRRLKVPPLSRWQDLPLRSLADVEAAAHTAPAAPFELREPD
EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
TVEAPVSGDKAFADAAPPATGAAADGVDPVGPKPKVDSDSAGASRALPSPGLRASGEAEA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KSEDAAEVSELKPKRTDQTADNAPRPLPTLGRRSAPAASNASDPSASEGKASVLQFQVRP
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
GNKSTSVAALLASLDQEVEAGARSLSPSVDSGDVDGVPSAAIEELQDQIRRHGDR
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3658701; 2822660 [H]