| Definition | Mesorhizobium loti MAFF303099 plasmid pMLa, complete sequence. |
|---|---|
| Accession | NC_002679 |
| Length | 351,911 |
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The map label for this gene is 13488261
Identifier: 13488261
GI number: 13488261
Start: 229432
End: 229740
Strand: Direct
Name: 13488261
Synonym: mlr9250
Alternate gene names: NA
Gene position: 229432-229740 (Clockwise)
Preceding gene: 13488260
Following gene: 13488262
Centisome position: 65.2
GC content: 60.19
Gene sequence:
>309_bases ATGGCAGACGGCCGGATCGATCCTGGCGAGCCCAAATTGTTGATCACTCCGCTCGTCAAGGGCTTGACCCGAGCGCCGAC GGTGCTCGGCATTCCCTACGAGCTTGCCGGGTTCATCGGCGTGCTGACGGCGGTCGTGTTCCTCGCAACCCATAATCTGC TCATGCTCTGTATCTGCGTGCCGCTCTATGCGGTCGCCAGGATCGCGATCATGCGCGATTCCATGTTCATCGAGATCATG TTCATCCGTTCACGAAAGACGCCACCCCGAAGCGCCAGCTTCTGGGGTGCGCGCAGTTATCGGGTGTGA
Upstream 100 bases:
>100_bases CATGGTTTGTGGCCGGAAGCTGGGTTTTGGGCATCGTGCTGGTCTTCGGCTCGGCCCAGATCGTCGAATTCTTTCAGTCC GCGGTCGGCAGGTGATCGGG
Downstream 100 bases:
>100_bases CCGTGGCAATCGCGCGGGCTCTTCGTGATGAACTGAGTTTCGGGGCCGTATCTCGTCGGGAAAACCCCGTTTCGGCTCAC ATACCCTATTCACGGCATGT
Product: conjugal transfer protein
Products: NA
Alternate protein names: Conjugal Transfer Protein
Number of amino acids: Translated: 102; Mature: 101
Protein sequence:
>102_residues MADGRIDPGEPKLLITPLVKGLTRAPTVLGIPYELAGFIGVLTAVVFLATHNLLMLCICVPLYAVARIAIMRDSMFIEIM FIRSRKTPPRSASFWGARSYRV
Sequences:
>Translated_102_residues MADGRIDPGEPKLLITPLVKGLTRAPTVLGIPYELAGFIGVLTAVVFLATHNLLMLCICVPLYAVARIAIMRDSMFIEIM FIRSRKTPPRSASFWGARSYRV >Mature_101_residues ADGRIDPGEPKLLITPLVKGLTRAPTVLGIPYELAGFIGVLTAVVFLATHNLLMLCICVPLYAVARIAIMRDSMFIEIMF IRSRKTPPRSASFWGARSYRV
Specific function: Unknown
COG id: COG3702
COG function: function code U; Type IV secretory pathway, VirB3 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11278; Mature: 11147
Theoretical pI: Translated: 10.44; Mature: 10.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADGRIDPGEPKLLITPLVKGLTRAPTVLGIPYELAGFIGVLTAVVFLATHNLLMLCICV CCCCCCCCCCCCEEHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLYAVARIAIMRDSMFIEIMFIRSRKTPPRSASFWGARSYRV HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ADGRIDPGEPKLLITPLVKGLTRAPTVLGIPYELAGFIGVLTAVVFLATHNLLMLCICV CCCCCCCCCCCEEHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLYAVARIAIMRDSMFIEIMFIRSRKTPPRSASFWGARSYRV HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA