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The map label for this gene is yjbJ [H]

Identifier: 13488259

GI number: 13488259

Start: 228254

End: 229105

Strand: Direct

Name: yjbJ [H]

Synonym: mlr9248

Alternate gene names: 13488259

Gene position: 228254-229105 (Clockwise)

Preceding gene: 13488258

Following gene: 13488260

Centisome position: 64.86

GC content: 62.56

Gene sequence:

>852_bases
GTGATTCGATCCCGCAAAACGGTACTGGCGGCGGCCCTGGTGGTGTGCCAAGTGGCGTTTGCGAAGGAAGCTTCGCAGAA
ATTCCAGTACCGAGTTACGGCACCTGTCACGCGCATCGTTAATGCTGCCGTCGACGCCAATGGCCGGGTGATGCCGGCCT
ATCAGGTTGAGAGCCAAGACGTGCAACGGATCGGGACGGCGCAAAGCACTGACGGCGCGGCCGCTACGGTGACATCGGCC
AAGGCTGACAACCCCTGCCCCGGCGTCGCTGCCCTGTCGAAGGAAGACGGACAGCGTATCGTCGAAACGGTCGCGCGCCA
GCAAGGCTTTGCCCCGCCGCTCGTCCTCGCGGTTGCCCGGGCCGAAAGCCGCTTCAATTCCGGCGCGCTATCGCCCAAAG
GTGCCTATGGCCTGATGCAGCTTCTGCCGTCCACGGCAGAAAGCTACGGGGTCGATATCTGCGATCCCGCGGATAATGTG
AAAGGTGGGATCGGCTTTCTGCGCGATCTGCATCGCAGGTTTCCGAACCCTATATACATGCTCGCCGCCTACAACGCCGG
CGAGGTCGCGGTTCTCAAATATAAGGGCGTGCCGCCCTACACCGAGACGGTTGGCTACGTCGCCAACGTCATCAACGATT
TCTACCAATGGCCATCGGTCGGATCTGAGGCAGTGATGCCCGCAGGGGCGGTGAGCCTTGACCTGGCCGGCGTTCAACCG
GCTGCGGCCGGCGCGGCGGATCAACAAAATGATCCGACATCCCGCACCAACTCCCGCAATGGCGGCACCACGAAGTCTGG
CGAAGCGACGGCGCCGGTCTGGCAGGGCGGGATGGTGCAAAACTTTGACTGA

Upstream 100 bases:

>100_bases
CTCATTTTCATTGTGCCAGCCTCAATTTCGGGATTGCAGTTCATCGAATCATTGTATTAATTCGATATCGTCAAATCAAC
AACGGCGCAGGATTATTTTA

Downstream 100 bases:

>100_bases
GGAGAAGCTTTGATGACCTTGTGGAAGATGATTGCGACACGCAGCGCTGGTGTGGCGATGCCGCTCATGCTCTTGGCAAC
GCAGGCGATGGCCGGGGGCG

Product: lytic transglycosylase-like protein

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MIRSRKTVLAAALVVCQVAFAKEASQKFQYRVTAPVTRIVNAAVDANGRVMPAYQVESQDVQRIGTAQSTDGAAATVTSA
KADNPCPGVAALSKEDGQRIVETVARQQGFAPPLVLAVARAESRFNSGALSPKGAYGLMQLLPSTAESYGVDICDPADNV
KGGIGFLRDLHRRFPNPIYMLAAYNAGEVAVLKYKGVPPYTETVGYVANVINDFYQWPSVGSEAVMPAGAVSLDLAGVQP
AAAGAADQQNDPTSRTNSRNGGTTKSGEATAPVWQGGMVQNFD

Sequences:

>Translated_283_residues
MIRSRKTVLAAALVVCQVAFAKEASQKFQYRVTAPVTRIVNAAVDANGRVMPAYQVESQDVQRIGTAQSTDGAAATVTSA
KADNPCPGVAALSKEDGQRIVETVARQQGFAPPLVLAVARAESRFNSGALSPKGAYGLMQLLPSTAESYGVDICDPADNV
KGGIGFLRDLHRRFPNPIYMLAAYNAGEVAVLKYKGVPPYTETVGYVANVINDFYQWPSVGSEAVMPAGAVSLDLAGVQP
AAAGAADQQNDPTSRTNSRNGGTTKSGEATAPVWQGGMVQNFD
>Mature_283_residues
MIRSRKTVLAAALVVCQVAFAKEASQKFQYRVTAPVTRIVNAAVDANGRVMPAYQVESQDVQRIGTAQSTDGAAATVTSA
KADNPCPGVAALSKEDGQRIVETVARQQGFAPPLVLAVARAESRFNSGALSPKGAYGLMQLLPSTAESYGVDICDPADNV
KGGIGFLRDLHRRFPNPIYMLAAYNAGEVAVLKYKGVPPYTETVGYVANVINDFYQWPSVGSEAVMPAGAVSLDLAGVQP
AAAGAADQQNDPTSRTNSRNGGTTKSGEATAPVWQGGMVQNFD

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 29698; Mature: 29698

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSRKTVLAAALVVCQVAFAKEASQKFQYRVTAPVTRIVNAAVDANGRVMPAYQVESQD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCEEEEEECCHHH
VQRIGTAQSTDGAAATVTSAKADNPCPGVAALSKEDGQRIVETVARQQGFAPPLVLAVAR
HHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHH
AESRFNSGALSPKGAYGLMQLLPSTAESYGVDICDPADNVKGGIGFLRDLHRRFPNPIYM
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
LAAYNAGEVAVLKYKGVPPYTETVGYVANVINDFYQWPSVGSEAVMPAGAVSLDLAGVQP
EEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
AAAGAADQQNDPTSRTNSRNGGTTKSGEATAPVWQGGMVQNFD
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRSRKTVLAAALVVCQVAFAKEASQKFQYRVTAPVTRIVNAAVDANGRVMPAYQVESQD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCEEEEEECCHHH
VQRIGTAQSTDGAAATVTSAKADNPCPGVAALSKEDGQRIVETVARQQGFAPPLVLAVAR
HHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHH
AESRFNSGALSPKGAYGLMQLLPSTAESYGVDICDPADNVKGGIGFLRDLHRRFPNPIYM
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
LAAYNAGEVAVLKYKGVPPYTETVGYVANVINDFYQWPSVGSEAVMPAGAVSLDLAGVQP
EEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
AAAGAADQQNDPTSRTNSRNGGTTKSGEATAPVWQGGMVQNFD
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]