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The map label for this gene is ydcR [H]

Identifier: 13488246

GI number: 13488246

Start: 201349

End: 202767

Strand: Direct

Name: ydcR [H]

Synonym: mlr9219

Alternate gene names: 13488246

Gene position: 201349-202767 (Clockwise)

Preceding gene: 13488245

Following gene: 13488247

Centisome position: 57.22

GC content: 53.28

Gene sequence:

>1419_bases
ATGTCTTATCGCTACAATTCTGTTGTCGACCTTATTCACAAGCAAATAAGCGCTGGCACTCTAAAGGTTGGCGACCGTCT
GCCGTCGATCAGGCAGCTCAGCCTCCTGACCGGTTTCAGCACCGTCACGATCCACCACGCGTACGAACTGCTTGAAAGCC
ATGGGTATTGCAGTGCGCGCCCCCGATCAGGGTTTTACCTGGTGCGTACCCCACTACAACAAATGGGCGATTTTCCACAT
GACGGCGAGAACTCGATCGAACCTATCTCGATCGTGGACTTCCCACATGCCCTGCTGCTGTCATGGCAAAAGCGGACGCT
GGATGCCTTCGGCGCACCTCATCCCAGCGCCGACCTGTTCGATTGCGCTGACGTCGACAGGGTGATGTGTCGCCTTCTAA
GGCGGAGAAAGGCGATTGCCGCCAACTCCGTAGGAGGCGACCCTGAACTCCGCCTCCAAATTGCGAAGCGCGCAGCGCAG
CGCGGCGTCGTTACCCGTCCTCAAGACATTGTCATTACCGGTTCAGCGATACAGGCGTTCAACCTCTGTCTCGATGCCCT
TACTGATCCCGGCGATGTCGTCTTAGTAGAAAGTCCGTCGTATTTCCCTGCCTTGTCGAGTATTAAGCGACGAAATTTAC
GTGTGATCGAGATCTATTCACACCCAGTAAATGGCATTGATCCTGACCAGCTGGAGCATTTGGTCAGGAACAATGAAATC
CGGGTGGCCGTTTTAATGGCGAGCAACCATTTTCCGACCGGAATCACCTATAGCGAAGATCGAATGAAAAGGATCGTCTC
GGTAGCAAAAAAGAATGACGTTACGATCATAGCGAATAGCATGCTCGATGATATAACGTACGACAGTGTAACTGATAACT
CGTTGCGAAAATTCGACTCCGGTGAAACCGTATTGCAATTTAGCAGCTTTGAGTGCGGTCTATCCCCACAATATGGGCTT
GGATGGATTGTCGCCGGAAAACATTCGCAGAAAATATTGGCCGCGTCCTACTTGGGCGACTACGCGCCGAATGATCAGCG
CATACAGCAGGCCGTAGCGGAGTATCTTTCCAGCCGAAGCCACGACAGGCAGTTGCGACGCATTCGGGAGACTCTTGCAT
CGCGCATGGAGCGAGGGCTTCAACTGCTCGCCGACAGCTTGCCGACGGGATGTTCCGTAAGCCGACCAACGGGCGGTTAC
ATGTGTTGGGTTCGTGGTCCACAAAAATTTACGTCCATGACTGCGGTGCTCCAACTGCACAAGCAGAACGTCAGCATTTT
GCCCGGCTCGGTATTTTCCGCCGCAGCCCGGTCATTCGAAAATTTCTTTGCCCTGAACTTGTCGTTTCCATGGTCAGCGG
AAAACGAAGCGAAGATTGGCAGCATCGGCGATTTGATCGCACAAATTGTCGGACGCTGA

Upstream 100 bases:

>100_bases
AGACCGGCTGTCGGTGCGCCGCTCACGAGTCAACGCGCCGAAAACTGTCATGGTTTTACGTCCATTGGACAGCGAAGATC
AGCACTGTTACGCTGGCATA

Downstream 100 bases:

>100_bases
CTTCTGCGACCTTTGGGAGACCGCGAGGCATTCCGTTTCGAGAGCCCGTCCAGGGCCTGGGTCGAGAGCTTCAACTCCCG
CGTCCGCCTTGCCATAGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MSYRYNSVVDLIHKQISAGTLKVGDRLPSIRQLSLLTGFSTVTIHHAYELLESHGYCSARPRSGFYLVRTPLQQMGDFPH
DGENSIEPISIVDFPHALLLSWQKRTLDAFGAPHPSADLFDCADVDRVMCRLLRRRKAIAANSVGGDPELRLQIAKRAAQ
RGVVTRPQDIVITGSAIQAFNLCLDALTDPGDVVLVESPSYFPALSSIKRRNLRVIEIYSHPVNGIDPDQLEHLVRNNEI
RVAVLMASNHFPTGITYSEDRMKRIVSVAKKNDVTIIANSMLDDITYDSVTDNSLRKFDSGETVLQFSSFECGLSPQYGL
GWIVAGKHSQKILAASYLGDYAPNDQRIQQAVAEYLSSRSHDRQLRRIRETLASRMERGLQLLADSLPTGCSVSRPTGGY
MCWVRGPQKFTSMTAVLQLHKQNVSILPGSVFSAAARSFENFFALNLSFPWSAENEAKIGSIGDLIAQIVGR

Sequences:

>Translated_472_residues
MSYRYNSVVDLIHKQISAGTLKVGDRLPSIRQLSLLTGFSTVTIHHAYELLESHGYCSARPRSGFYLVRTPLQQMGDFPH
DGENSIEPISIVDFPHALLLSWQKRTLDAFGAPHPSADLFDCADVDRVMCRLLRRRKAIAANSVGGDPELRLQIAKRAAQ
RGVVTRPQDIVITGSAIQAFNLCLDALTDPGDVVLVESPSYFPALSSIKRRNLRVIEIYSHPVNGIDPDQLEHLVRNNEI
RVAVLMASNHFPTGITYSEDRMKRIVSVAKKNDVTIIANSMLDDITYDSVTDNSLRKFDSGETVLQFSSFECGLSPQYGL
GWIVAGKHSQKILAASYLGDYAPNDQRIQQAVAEYLSSRSHDRQLRRIRETLASRMERGLQLLADSLPTGCSVSRPTGGY
MCWVRGPQKFTSMTAVLQLHKQNVSILPGSVFSAAARSFENFFALNLSFPWSAENEAKIGSIGDLIAQIVGR
>Mature_471_residues
SYRYNSVVDLIHKQISAGTLKVGDRLPSIRQLSLLTGFSTVTIHHAYELLESHGYCSARPRSGFYLVRTPLQQMGDFPHD
GENSIEPISIVDFPHALLLSWQKRTLDAFGAPHPSADLFDCADVDRVMCRLLRRRKAIAANSVGGDPELRLQIAKRAAQR
GVVTRPQDIVITGSAIQAFNLCLDALTDPGDVVLVESPSYFPALSSIKRRNLRVIEIYSHPVNGIDPDQLEHLVRNNEIR
VAVLMASNHFPTGITYSEDRMKRIVSVAKKNDVTIIANSMLDDITYDSVTDNSLRKFDSGETVLQFSSFECGLSPQYGLG
WIVAGKHSQKILAASYLGDYAPNDQRIQQAVAEYLSSRSHDRQLRRIRETLASRMERGLQLLADSLPTGCSVSRPTGGYM
CWVRGPQKFTSMTAVLQLHKQNVSILPGSVFSAAARSFENFFALNLSFPWSAENEAKIGSIGDLIAQIVGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=467, Percent_Identity=30.406852248394, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1790797, Length=467, Percent_Identity=24.4111349036403, Blast_Score=183, Evalue=2e-47,
Organism=Drosophila melanogaster, GI21356535, Length=367, Percent_Identity=24.2506811989101, Blast_Score=95, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52320; Mature: 52189

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYRYNSVVDLIHKQISAGTLKVGDRLPSIRQLSLLTGFSTVTIHHAYELLESHGYCSAR
CCCCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
PRSGFYLVRTPLQQMGDFPHDGENSIEPISIVDFPHALLLSWQKRTLDAFGAPHPSADLF
CCCCEEEEECCHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
DCADVDRVMCRLLRRRKAIAANSVGGDPELRLQIAKRAAQRGVVTRPQDIVITGSAIQAF
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHH
NLCLDALTDPGDVVLVESPSYFPALSSIKRRNLRVIEIYSHPVNGIDPDQLEHLVRNNEI
HHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCE
RVAVLMASNHFPTGITYSEDRMKRIVSVAKKNDVTIIANSMLDDITYDSVTDNSLRKFDS
EEEEEEECCCCCCCCEECHHHHHHHHHHHHCCCEEEEECHHHHHCCCCCCCCHHHHHCCC
GETVLQFSSFECGLSPQYGLGWIVAGKHSQKILAASYLGDYAPNDQRIQQAVAEYLSSRS
CCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
HDRQLRRIRETLASRMERGLQLLADSLPTGCSVSRPTGGYMCWVRGPQKFTSMTAVLQLH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
KQNVSILPGSVFSAAARSFENFFALNLSFPWSAENEAKIGSIGDLIAQIVGR
HCCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SYRYNSVVDLIHKQISAGTLKVGDRLPSIRQLSLLTGFSTVTIHHAYELLESHGYCSAR
CCCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
PRSGFYLVRTPLQQMGDFPHDGENSIEPISIVDFPHALLLSWQKRTLDAFGAPHPSADLF
CCCCEEEEECCHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
DCADVDRVMCRLLRRRKAIAANSVGGDPELRLQIAKRAAQRGVVTRPQDIVITGSAIQAF
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHH
NLCLDALTDPGDVVLVESPSYFPALSSIKRRNLRVIEIYSHPVNGIDPDQLEHLVRNNEI
HHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCE
RVAVLMASNHFPTGITYSEDRMKRIVSVAKKNDVTIIANSMLDDITYDSVTDNSLRKFDS
EEEEEEECCCCCCCCEECHHHHHHHHHHHHCCCEEEEECHHHHHCCCCCCCCHHHHHCCC
GETVLQFSSFECGLSPQYGLGWIVAGKHSQKILAASYLGDYAPNDQRIQQAVAEYLSSRS
CCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
HDRQLRRIRETLASRMERGLQLLADSLPTGCSVSRPTGGYMCWVRGPQKFTSMTAVLQLH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
KQNVSILPGSVFSAAARSFENFFALNLSFPWSAENEAKIGSIGDLIAQIVGR
HCCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]