Click here to switch to the map view.

The map label for this gene is yliC [C]

Identifier: 13488241

GI number: 13488241

Start: 191208

End: 192167

Strand: Direct

Name: yliC [C]

Synonym: mlr9211

Alternate gene names: 13488241

Gene position: 191208-192167 (Clockwise)

Preceding gene: 13488240

Following gene: 13488242

Centisome position: 54.33

GC content: 60.42

Gene sequence:

>960_bases
ATGTCTTCTTCTATCGCGAAACTTGGTGCCCAGCGGATTGCGCTGGGCATCATGCTGCTATTGGCCGTCTCGGTCCTGAT
CTTCGCTGGCACCCAGATCCTGCCCGGCGACGTTGCGCAAGCCATTCTCGGACAGTCCGCGACGCCGGAGTCGCTCGCCA
ATCTGCGCGAGCAGCTCGGGCTCAACCAGCCTGCCTATGTCAGGTATTTCCACTGGCTGGGGGGTGTGCTCACCGGTGAT
CTCGGCACGTCCATGACGAGTGGACAGGGGATCAGCAGCGCTATCAAGGGCCGCCTGTGGAACACTCTGTTTCTGGCCTT
CTGGGCGGCGACCGTGGCTGTGCCGCTGGCGATCATCCTCGGCCTGATCGCAGTGCGCTACCGCAATGGCTGGGTCGACA
AGCTGATCTCCGGCCTGGCCCTCGCCTCGACCTCGTTTCCCGAATTCTTCATTGGCTATGTGCTCGTCTATTTCTTTGCC
GTGAAGTGGCAGATCTTCCCCGGCATCTCGACCGTCTATGACGGCATGCCGTTCCTCGAGCGCATGCAGGCGATCGCCAT
GCCTGTGACGGCCCTGACCTTGGTTGTGCTGGCCCATATGATGCGCATGACACGCGCGGCGATCCTTAACGTCATGCAGT
CGGCCTATGTCGAGACGGCCGAGCTGAAGGGCCTGTCGGCCTTCGCCGTCATCCGCAGGCATGCCTTTCCGAACGCAATC
GCTCCGATCATCAACGTCGTCATGCTCAACCTTGCCTATCTCATCGTCGGCGTGGTGGTGGTTGAAGTGATCTTCGTCTA
TCCGGGCATGGGACAATATCTGGTCGACCATGTCACCAAGCGTGACGTGCCGGTGGTGCAGGCGGTCGGCCTGATCTTCG
CCGCCGTCTATATCAGCCTCAACATCATCGCGGACATTGCGGCGATCGTCGCTAATCCACGGCTCAGACATCCGAAATAG

Upstream 100 bases:

>100_bases
GCGCAAAGGTTGAGGGTTGGATCGACGATCCGAACTATGAGCTGTCAGGATACTATGCCCTGTCACGGTGCTGGATTGCC
GGTTGAATCGGAACCAGTAG

Downstream 100 bases:

>100_bases
GCGCCGGGCATGCTCGATATCAAACGCATACCGATCCCGGCGCTGATCGGGATCGTGCTGACGGCCATGTTTGTCCTGGC
GGCGATCTTCGGCCCGTTGA

Product: dipeptide transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSSSIAKLGAQRIALGIMLLLAVSVLIFAGTQILPGDVAQAILGQSATPESLANLREQLGLNQPAYVRYFHWLGGVLTGD
LGTSMTSGQGISSAIKGRLWNTLFLAFWAATVAVPLAIILGLIAVRYRNGWVDKLISGLALASTSFPEFFIGYVLVYFFA
VKWQIFPGISTVYDGMPFLERMQAIAMPVTALTLVVLAHMMRMTRAAILNVMQSAYVETAELKGLSAFAVIRRHAFPNAI
APIINVVMLNLAYLIVGVVVVEVIFVYPGMGQYLVDHVTKRDVPVVQAVGLIFAAVYISLNIIADIAAIVANPRLRHPK

Sequences:

>Translated_319_residues
MSSSIAKLGAQRIALGIMLLLAVSVLIFAGTQILPGDVAQAILGQSATPESLANLREQLGLNQPAYVRYFHWLGGVLTGD
LGTSMTSGQGISSAIKGRLWNTLFLAFWAATVAVPLAIILGLIAVRYRNGWVDKLISGLALASTSFPEFFIGYVLVYFFA
VKWQIFPGISTVYDGMPFLERMQAIAMPVTALTLVVLAHMMRMTRAAILNVMQSAYVETAELKGLSAFAVIRRHAFPNAI
APIINVVMLNLAYLIVGVVVVEVIFVYPGMGQYLVDHVTKRDVPVVQAVGLIFAAVYISLNIIADIAAIVANPRLRHPK
>Mature_318_residues
SSSIAKLGAQRIALGIMLLLAVSVLIFAGTQILPGDVAQAILGQSATPESLANLREQLGLNQPAYVRYFHWLGGVLTGDL
GTSMTSGQGISSAIKGRLWNTLFLAFWAATVAVPLAIILGLIAVRYRNGWVDKLISGLALASTSFPEFFIGYVLVYFFAV
KWQIFPGISTVYDGMPFLERMQAIAMPVTALTLVVLAHMMRMTRAAILNVMQSAYVETAELKGLSAFAVIRRHAFPNAIA
PIINVVMLNLAYLIVGVVVVEVIFVYPGMGQYLVDHVTKRDVPVVQAVGLIFAAVYISLNIIADIAAIVANPRLRHPK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=298, Percent_Identity=34.8993288590604, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1789965, Length=334, Percent_Identity=33.5329341317365, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=34.1935483870968, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787761, Length=303, Percent_Identity=30.3630363036304, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787497, Length=274, Percent_Identity=28.4671532846715, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787550, Length=275, Percent_Identity=26.5454545454545, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1788504, Length=282, Percent_Identity=25.886524822695, Blast_Score=104, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34487; Mature: 34355

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSIAKLGAQRIALGIMLLLAVSVLIFAGTQILPGDVAQAILGQSATPESLANLREQLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC
LNQPAYVRYFHWLGGVLTGDLGTSMTSGQGISSAIKGRLWNTLFLAFWAATVAVPLAIIL
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIAVRYRNGWVDKLISGLALASTSFPEFFIGYVLVYFFAVKWQIFPGISTVYDGMPFLE
HHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHH
RMQAIAMPVTALTLVVLAHMMRMTRAAILNVMQSAYVETAELKGLSAFAVIRRHAFPNAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHH
APIINVVMLNLAYLIVGVVVVEVIFVYPGMGQYLVDHVTKRDVPVVQAVGLIFAAVYISL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NIIADIAAIVANPRLRHPK
HHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SSSIAKLGAQRIALGIMLLLAVSVLIFAGTQILPGDVAQAILGQSATPESLANLREQLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC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HHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]