Click here to switch to the map view.

The map label for this gene is sodC

Identifier: 15603817

GI number: 15603817

Start: 2190308

End: 2190868

Strand: Direct

Name: sodC

Synonym: PM1952

Alternate gene names: 15603817

Gene position: 2190308-2190868 (Clockwise)

Preceding gene: 15603816

Following gene: 15603820

Centisome position: 97.02

GC content: 44.74

Gene sequence:

>561_bases
ATGAAAAAAACAGTATTAGCCCTGATGTTTTCTTGTGGTATGGTGGCTTCTGCATTTGCGCATAATCATGCGGTGGAACA
TAAACATACCGGCGAAATGCTAGAAGTGAAAGTAGAGTTGCTGGATCCGGCTAAAGGTAATCAAGAAATTGGTAAAGTCG
TGATTACTGAATCTGCTTATGGTTTGGTCTTTACGCCAGAATTGAAAAATTTAACGGCGGGTTTGCATGGTTTCCATATT
CATCAAAACCCAAGCTGCGATGCCAAAGAAAAAGACGGCAAGTTAGTAGCGGGGTTGGCAGCTGGTGGACATTGGGATCC
TAAAAATGCAGGTAAACATGGTTACCCGTGGTCGGATGATGCCCATTTAGGTGATTTACCTGCGTTAGCTGTGAACCAAG
ATGGTACTGCAAATAACCCAGTGTTAGCGCCACGTTTGAAACATTTGGACGACGTGAAAGGGCGTTCATTAATGATTCAT
GAGGGCGGTGATAACCATGATGATCACCCAGCACCATTAGGTGGTGGCGGTCCACGTATGGCTTGCGGTGTGATCAAATA
A

Upstream 100 bases:

>100_bases
TTCTTAAAAACGCTTTTACAAAAGCGCTAAAAAGCCACCATCATTGCAGTAAAATAACCCGGCGATTTAGCATTATTTTA
CACTCAACAAGGAGATTAAT

Downstream 100 bases:

>100_bases
AGCCTATTGATGAACAAAAAAGCGTAATGAAATTTTTCATTACGCTTTTTTATGGCAATAAAGTGCGCTCAGTTTTACTC
TCAGTTTAGGCTAAACGCTG

Product: SodC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MKKTVLALMFSCGMVASAFAHNHAVEHKHTGEMLEVKVELLDPAKGNQEIGKVVITESAYGLVFTPELKNLTAGLHGFHI
HQNPSCDAKEKDGKLVAGLAAGGHWDPKNAGKHGYPWSDDAHLGDLPALAVNQDGTANNPVLAPRLKHLDDVKGRSLMIH
EGGDNHDDHPAPLGGGGPRMACGVIK

Sequences:

>Translated_186_residues
MKKTVLALMFSCGMVASAFAHNHAVEHKHTGEMLEVKVELLDPAKGNQEIGKVVITESAYGLVFTPELKNLTAGLHGFHI
HQNPSCDAKEKDGKLVAGLAAGGHWDPKNAGKHGYPWSDDAHLGDLPALAVNQDGTANNPVLAPRLKHLDDVKGRSLMIH
EGGDNHDDHPAPLGGGGPRMACGVIK
>Mature_186_residues
MKKTVLALMFSCGMVASAFAHNHAVEHKHTGEMLEVKVELLDPAKGNQEIGKVVITESAYGLVFTPELKNLTAGLHGFHI
HQNPSCDAKEKDGKLVAGLAAGGHWDPKNAGKHGYPWSDDAHLGDLPALAVNQDGTANNPVLAPRLKHLDDVKGRSLMIH
EGGDNHDDHPAPLGGGGPRMACGVIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family

Homologues:

Organism=Escherichia coli, GI1787934, Length=152, Percent_Identity=55.921052631579, Blast_Score=164, Evalue=4e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SODC_PASMU (Q59689)

Other databases:

- EMBL:   AE004439
- EMBL:   X83124
- RefSeq:   NP_246891.1
- ProteinModelPortal:   Q59689
- SMR:   Q59689
- PRIDE:   Q59689
- GeneID:   1245299
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1952
- NMPDR:   fig|272843.1.peg.1953
- HOGENOM:   HBG609879
- OMA:   HALMVHA
- ProtClustDB:   CLSK870677
- BioCyc:   PMUL272843:PM1952-MONOMER
- BRENDA:   1.15.1.1
- InterPro:   IPR018152
- InterPro:   IPR001424
- Gene3D:   G3DSA:2.60.40.200
- PANTHER:   PTHR10003

Pfam domain/function: PF00080 Sod_Cu; SSF49329 SOD_Cu_Zn

EC number: =1.15.1.1

Molecular weight: Translated: 19719; Mature: 19719

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS00087 SOD_CU_ZN_1; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTVLALMFSCGMVASAFAHNHAVEHKHTGEMLEVKVELLDPAKGNQEIGKVVITESAY
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCC
GLVFTPELKNLTAGLHGFHIHQNPSCDAKEKDGKLVAGLAAGGHWDPKNAGKHGYPWSDD
CEEECCCHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
AHLGDLPALAVNQDGTANNPVLAPRLKHLDDVKGRSLMIHEGGDNHDDHPAPLGGGGPRM
CCCCCCCEEEECCCCCCCCCEECHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
ACGVIK
EEECCC
>Mature Secondary Structure
MKKTVLALMFSCGMVASAFAHNHAVEHKHTGEMLEVKVELLDPAKGNQEIGKVVITESAY
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCC
GLVFTPELKNLTAGLHGFHIHQNPSCDAKEKDGKLVAGLAAGGHWDPKNAGKHGYPWSDD
CEEECCCHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
AHLGDLPALAVNQDGTANNPVLAPRLKHLDDVKGRSLMIHEGGDNHDDHPAPLGGGGPRM
CCCCCCCEEEECCCCCCCCCEECHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
ACGVIK
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100; 7496539