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The map label for this gene is ycaN [H]

Identifier: 15603810

GI number: 15603810

Start: 2180657

End: 2181100

Strand: Direct

Name: ycaN [H]

Synonym: PM1945

Alternate gene names: 15603810

Gene position: 2180657-2181100 (Clockwise)

Preceding gene: 15603807

Following gene: 15603816

Centisome position: 96.6

GC content: 40.77

Gene sequence:

>444_bases
TTGCTTGCTTGTATCGTATTCATAGGCGTAATTATAACAAGAAATTTCAATATTTCAAGTATGATTGAAATGTTTTTTAA
TTGTCCGAAGCCACCTTTCCAAATCCAAAAACCCACTTCCCATTTTTCGCTATTCTTAAGCCATAGCATGAAAAATTTAG
AGACACGGCTAAACCTACGACTATTCAACCGTACAACACGCAATGTATCGCTAACCGAAGCGGGACAACAGTTTTTTGAA
CAGCTTTTGCCGCTTTATCAAGCCATAAACCAAGAAGTCGATGCATTAAATGATTTTTTGAATACGCCATCGGGATTGAT
TCGCATCAACGCCCCGGCGATGGCAGCGGAAGCCGTGTTGTATCCAAAATTAAAGCCGATTTTGAACCAATACCCGAAAA
CCCGCTTGGAAATCGTGGTGGACGATCGTTGGCAGATATTGTGA

Upstream 100 bases:

>100_bases
CTGTTTTGCCAAGTCGCCAGCAATCATGCCAGTACTGCCTGCGGCGGTAAGTTGTTGAAAAATCGCCAGTCTTATCGGAG
AAGACAGGCTCTCAAAGAGT

Downstream 100 bases:

>100_bases
AAGAAGGGGTTGATATGGGCGTGCACCTAGGCAACGACGTGGCGTAGTTCAGTACAATAGTGTTTGACGCGCCATTAAAC
TGCTGTATCTCTCCGGCCAG

Product: YcaN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MLACIVFIGVIITRNFNISSMIEMFFNCPKPPFQIQKPTSHFSLFLSHSMKNLETRLNLRLFNRTTRNVSLTEAGQQFFE
QLLPLYQAINQEVDALNDFLNTPSGLIRINAPAMAAEAVLYPKLKPILNQYPKTRLEIVVDDRWQIL

Sequences:

>Translated_147_residues
MLACIVFIGVIITRNFNISSMIEMFFNCPKPPFQIQKPTSHFSLFLSHSMKNLETRLNLRLFNRTTRNVSLTEAGQQFFE
QLLPLYQAINQEVDALNDFLNTPSGLIRINAPAMAAEAVLYPKLKPILNQYPKTRLEIVVDDRWQIL
>Mature_147_residues
MLACIVFIGVIITRNFNISSMIEMFFNCPKPPFQIQKPTSHFSLFLSHSMKNLETRLNLRLFNRTTRNVSLTEAGQQFFE
QLLPLYQAINQEVDALNDFLNTPSGLIRINAPAMAAEAVLYPKLKPILNQYPKTRLEIVVDDRWQIL

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=97, Percent_Identity=47.4226804123711, Blast_Score=95, Evalue=2e-21,
Organism=Escherichia coli, GI1787589, Length=96, Percent_Identity=37.5, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1786401, Length=97, Percent_Identity=35.0515463917526, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 16957; Mature: 16957

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLACIVFIGVIITRNFNISSMIEMFFNCPKPPFQIQKPTSHFSLFLSHSMKNLETRLNLR
CHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LFNRTTRNVSLTEAGQQFFEQLLPLYQAINQEVDALNDFLNTPSGLIRINAPAMAAEAVL
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
YPKLKPILNQYPKTRLEIVVDDRWQIL
CCHHHHHHHHCCCCEEEEEECCCEECC
>Mature Secondary Structure
MLACIVFIGVIITRNFNISSMIEMFFNCPKPPFQIQKPTSHFSLFLSHSMKNLETRLNLR
CHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LFNRTTRNVSLTEAGQQFFEQLLPLYQAINQEVDALNDFLNTPSGLIRINAPAMAAEAVL
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
YPKLKPILNQYPKTRLEIVVDDRWQIL
CCHHHHHHHHCCCCEEEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]