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The map label for this gene is cydA [C]

Identifier: 15602839

GI number: 15602839

Start: 1145312

End: 1146874

Strand: Reverse

Name: cydA [C]

Synonym: PM0974

Alternate gene names: 15602839

Gene position: 1146874-1145312 (Counterclockwise)

Preceding gene: 15602841

Following gene: 15602838

Centisome position: 50.8

GC content: 38.32

Gene sequence:

>1563_bases
ATGTTGGACGTTGTTGAACTCTCTCGATTGCAGTTTGCATTAACTGCGTTATATCACTTTTTGTTTGTGCCATTAACACT
AGGTTTATCGTTCATTCTAGTGATTATGGAAACGCTCTATGTAGCCACAGGCAAAGAAGTTTATAAAGATATGACAAAAT
TCTGGGGTAAGTTATTTGGTATTAACTTTGCTCTCGGTGTCACAACTGGTATTACAATGGAATTCCAGTTTGGTACGAAC
TGGTCATATTATTCTCATTATGTGGGAGATATTTTTGGTGCGCCTCTTGCAATTGAAGCATTATTGGCATTCTTCTTAGA
ATCGACTTTCGTTGGTTTATTCTTCTTCGGTTGGGACAGATTATCAAAAGGTAAACACTTAATTGCGACATACTGTGTGG
CATTTGGTTCAAATTTATCCGCAATGTGGATTCTTGTTGCAAACGGTTGGATGCAATACCCTGTCGCTTCTGAGTTTAAT
TTTGAAACTATGCGAATGGAAATGACCAGCTTTATGGATTTATGGTTAAACCCAGTTGCACAAAGTAAATTCTTACATAC
TCTCTCTGCAGGTTATGTGAGTGGTGCAATGTTTGTATTAGGGATTAGCGCTTATTATATCTTGAAAGGTCGTGATCTCG
GTTTTGCTAAACGTTCGTTTTCTATTGCTTCCACTTTCGGTGTGATTTCTATTTTCTCGGTGATCATCATGGGTGATGAA
TCTGGTTATGAAATCGGTCAAACACAGCCTGTGAAATTAGCAGCAATGGAAGGGGAATGGCATACTCAACCTGCACCAGC
TGACTGGAATTTACTTGTAGTGCCAAATCAAGCAGAGAAACGTAATGATTTTGCTATTCAAATTCCTTACGCTGCAGGGA
TTATTGTGACACGTTCTTTAGATAAACAATTTGCGGGTCTTGCTGATTTAGAAGCGTTGAATGTGGAACGTGTACGTAAT
GGTGTTCAAGCATATGACTTGTTACTTCAATTACAAGCACAGAAAAAAGCAGGTCAAATCAGTGAAGAAACAAAAGCACA
ATTTAATGCTGTCTCTAAAGATCTCGGTTTCGGTTTATTATTAAAACGTTATACCGACAAAGTGGTTGATGCGACTGAAG
AGCAAATTAAACAAGCTGCGGCAGATACAATTCCAAATGTGGGACCTACTTTCTGGTCTTTCCGTATCATGATGGCAGCA
GGTGGTTTATTACTTCTTCTTCTGGTTGGTGCATTTGTACAAAATGTGCGTAAAACAGTGGGAACAAAACCTTGGTTCTT
AAAAGCGCTTTTATGGTCGATTCCATTACCATGGATTGCAATTGAAAGTGGTTGGTTCTTAGCTGAATATGGTCGTCAAC
CTTGGGCGATTTATGAAGTGTTACCAGTTGGTGTGGCTAACTCTGCACTTACAACAGGTGATCTTTGGTTCTCCATTGGA
TTAATCTGTGCACTTTATACCTTATTCCTTGTAGTAGAAATGTATTTAATGTTCAAATACGGTAGATTAGGACCAAGTTC
ATTAAAAACAGGTCGTTACTACTTTGAACAATCATCTAAATAA

Upstream 100 bases:

>100_bases
AGGTAATTCAAGGGGTCTACTTAGGGAATTTCTTTAAGTATTGGGGGTGGTTACTTTGTAATCATTTTGTAGGAACTTGT
AGCATTTACAAGGAGTTGAG

Downstream 100 bases:

>100_bases
GCAGGAGCCTGATTATGATTGATTATGAAATTCTACGCTTTGTTTGGTGGATCTTGATCGGTGTATTGCTTATTGGTTTT
GCAGTAACTGATGGTTTTGA

Product: CydA

Products: NA

Alternate protein names: Cytochrome oxidase subunit I [H]

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MLDVVELSRLQFALTALYHFLFVPLTLGLSFILVIMETLYVATGKEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGTN
WSYYSHYVGDIFGAPLAIEALLAFFLESTFVGLFFFGWDRLSKGKHLIATYCVAFGSNLSAMWILVANGWMQYPVASEFN
FETMRMEMTSFMDLWLNPVAQSKFLHTLSAGYVSGAMFVLGISAYYILKGRDLGFAKRSFSIASTFGVISIFSVIIMGDE
SGYEIGQTQPVKLAAMEGEWHTQPAPADWNLLVVPNQAEKRNDFAIQIPYAAGIIVTRSLDKQFAGLADLEALNVERVRN
GVQAYDLLLQLQAQKKAGQISEETKAQFNAVSKDLGFGLLLKRYTDKVVDATEEQIKQAAADTIPNVGPTFWSFRIMMAA
GGLLLLLLVGAFVQNVRKTVGTKPWFLKALLWSIPLPWIAIESGWFLAEYGRQPWAIYEVLPVGVANSALTTGDLWFSIG
LICALYTLFLVVEMYLMFKYGRLGPSSLKTGRYYFEQSSK

Sequences:

>Translated_520_residues
MLDVVELSRLQFALTALYHFLFVPLTLGLSFILVIMETLYVATGKEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGTN
WSYYSHYVGDIFGAPLAIEALLAFFLESTFVGLFFFGWDRLSKGKHLIATYCVAFGSNLSAMWILVANGWMQYPVASEFN
FETMRMEMTSFMDLWLNPVAQSKFLHTLSAGYVSGAMFVLGISAYYILKGRDLGFAKRSFSIASTFGVISIFSVIIMGDE
SGYEIGQTQPVKLAAMEGEWHTQPAPADWNLLVVPNQAEKRNDFAIQIPYAAGIIVTRSLDKQFAGLADLEALNVERVRN
GVQAYDLLLQLQAQKKAGQISEETKAQFNAVSKDLGFGLLLKRYTDKVVDATEEQIKQAAADTIPNVGPTFWSFRIMMAA
GGLLLLLLVGAFVQNVRKTVGTKPWFLKALLWSIPLPWIAIESGWFLAEYGRQPWAIYEVLPVGVANSALTTGDLWFSIG
LICALYTLFLVVEMYLMFKYGRLGPSSLKTGRYYFEQSSK
>Mature_520_residues
MLDVVELSRLQFALTALYHFLFVPLTLGLSFILVIMETLYVATGKEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGTN
WSYYSHYVGDIFGAPLAIEALLAFFLESTFVGLFFFGWDRLSKGKHLIATYCVAFGSNLSAMWILVANGWMQYPVASEFN
FETMRMEMTSFMDLWLNPVAQSKFLHTLSAGYVSGAMFVLGISAYYILKGRDLGFAKRSFSIASTFGVISIFSVIIMGDE
SGYEIGQTQPVKLAAMEGEWHTQPAPADWNLLVVPNQAEKRNDFAIQIPYAAGIIVTRSLDKQFAGLADLEALNVERVRN
GVQAYDLLLQLQAQKKAGQISEETKAQFNAVSKDLGFGLLLKRYTDKVVDATEEQIKQAAADTIPNVGPTFWSFRIMMAA
GGLLLLLLVGAFVQNVRKTVGTKPWFLKALLWSIPLPWIAIESGWFLAEYGRQPWAIYEVLPVGVANSALTTGDLWFSIG
LICALYTLFLVVEMYLMFKYGRLGPSSLKTGRYYFEQSSK

Specific function: Probable cytochrome oxidase subunit [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=519, Percent_Identity=68.4007707129094, Blast_Score=751, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=510, Percent_Identity=58.8235294117647, Blast_Score=616, Evalue=1e-177,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58121; Mature: 58121

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDVVELSRLQFALTALYHFLFVPLTLGLSFILVIMETLYVATGKEVYKDMTKFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
INFALGVTTGITMEFQFGTNWSYYSHYVGDIFGAPLAIEALLAFFLESTFVGLFFFGWDR
CEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKGKHLIATYCVAFGSNLSAMWILVANGWMQYPVASEFNFETMRMEMTSFMDLWLNPVA
HCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH
QSKFLHTLSAGYVSGAMFVLGISAYYILKGRDLGFAKRSFSIASTFGVISIFSVIIMGDE
HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEECCC
SGYEIGQTQPVKLAAMEGEWHTQPAPADWNLLVVPNQAEKRNDFAIQIPYAAGIIVTRSL
CCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEECH
DKQFAGLADLEALNVERVRNGVQAYDLLLQLQAQKKAGQISEETKAQFNAVSKDLGFGLL
HHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHH
LKRYTDKVVDATEEQIKQAAADTIPNVGPTFWSFRIMMAAGGLLLLLLVGAFVQNVRKTV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTKPWFLKALLWSIPLPWIAIESGWFLAEYGRQPWAIYEVLPVGVANSALTTGDLWFSIG
CCCHHHHHHHHHHCCCCEEEEECCEEEHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHH
LICALYTLFLVVEMYLMFKYGRLGPSSLKTGRYYFEQSSK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MLDVVELSRLQFALTALYHFLFVPLTLGLSFILVIMETLYVATGKEVYKDMTKFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
INFALGVTTGITMEFQFGTNWSYYSHYVGDIFGAPLAIEALLAFFLESTFVGLFFFGWDR
CEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKGKHLIATYCVAFGSNLSAMWILVANGWMQYPVASEFNFETMRMEMTSFMDLWLNPVA
HCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH
QSKFLHTLSAGYVSGAMFVLGISAYYILKGRDLGFAKRSFSIASTFGVISIFSVIIMGDE
HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEECCC
SGYEIGQTQPVKLAAMEGEWHTQPAPADWNLLVVPNQAEKRNDFAIQIPYAAGIIVTRSL
CCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEECH
DKQFAGLADLEALNVERVRNGVQAYDLLLQLQAQKKAGQISEETKAQFNAVSKDLGFGLL
HHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHH
LKRYTDKVVDATEEQIKQAAADTIPNVGPTFWSFRIMMAAGGLLLLLLVGAFVQNVRKTV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTKPWFLKALLWSIPLPWIAIESGWFLAEYGRQPWAIYEVLPVGVANSALTTGDLWFSIG
CCCHHHHHHHHHHCCCCEEEEECCEEEHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHH
LICALYTLFLVVEMYLMFKYGRLGPSSLKTGRYYFEQSSK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]